Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004339

Physical Location & Seq

Genomic Coordinates Reverse (-)

69960832 .. 69961625

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0574200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGCTCAACTCCTGGAAACCTCAAGGCAACTCTCGCAGGAAGAAGAAGAAGAAGAAGAAGTCTCAGGCCGACGCGTGGCTATAGCCCTAGAGCTCGAAGAAGCTTTAACAATGGTGGAGAAGGAGGAGGACGCAAAGCGTTGAAGTGTTCCAAGGTGGTCTCAGCCAAATTGGAAACCCTGAAAAACCTCATTCCAAACGGGAAGAGTAGTAGTGCTAGTGCGGTGCAGGCGGACAAGTTGTTCCAAGACACAGCGGATTATATCGTTCTGTTGCGAACCCAGGTGGTGATTTTGCAGAAACTCATTGAGGTTTATGGATCTAGTAGTATTGAGAAAGAAGATAATACTAATGCTGCTGTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.26

Weight (kDa)

10.8

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01720
fragaria_vesca	FvH4_6g52410
malus_domestica	MD04G1153000.v1.1 MD08G1068600.v1.1 MD09G1018400.v1.1 MD16G1283700.v1.1 MD17G1018800.v1.1
prunus_persica	Prupe.3G298800_v2.0.a1
pyrus_communis	pycom111g01530 pycom15g31850 pycom17g01550 pycom17g01560
rosa_chinensis	RchiOBHm_Chr2g0174041 RchiOBHm_Chr2g0174051
rosa_laevigata	RLG00000022239 RLG00000022240
rosa_multiflora	Rmu_co8300129.1_g000001 Rmu_co8470913.1_g000001 Rmu_sc0037186.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078500 Rroxscaffold_2G00078510
rosa_rugosa	Rorug02G0574200
rosa_samantha	Rh2AG643300 Rh2AG653400 Rh2AG653600 Rh2BG664700 Rh2BG664900 Rh2CG629100 Rh2CG629200 Rh2DG679500 Rh2DG679600
rosa_wichuraiana	Rw2G053670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	76
AciI	CCGC	3 cut(s)	224, 233, 257
AclWI	GGATC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	2 cut(s)	13, 282
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	6, 95, 105
AluI	AGCT	3 cut(s)	6, 95, 105
Alw21I	GWGCWC	2 cut(s)	8, 97
Alw26I	GTCTC	2 cut(s)	68, 166
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	301
BanII	GRGCYC	2 cut(s)	8, 97
Bbv12I	GWGCWC	2 cut(s)	8, 97
BbvI	GCAGC	1 cut(s)	343
BciT130I	CCWGG	2 cut(s)	15, 284
BcoDI	GTCTC	2 cut(s)	68, 166
BfaI	CTAG	3 cut(s)	90, 219, 324
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme1390I	CCNGG	2 cut(s)	15, 284
BmrFI	CCNGG	2 cut(s)	15, 284
BplI	GAGNNNNNCTC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	153, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	15, 284
BseDI	CCNNGG	2 cut(s)	153, 282
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	2 cut(s)	79, 177
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	8, 97
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	68, 166
BsnI	GGCC	1 cut(s)	70
Bso31I	GGTCTC	1 cut(s)	166
Bsp1286I	GDGCHC	2 cut(s)	8, 97
Bsp143I	GATC	1 cut(s)	320
BspACI	CCGC	3 cut(s)	224, 233, 257
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	78, 176
BspFNI	CGCG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	153, 282
BssMI	GATC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	15, 284
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	65, 163
BstFNI	CGCG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	323
BstMAI	GTCTC	2 cut(s)	68, 166
BstMBI	GATC	1 cut(s)	320
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 230
BstNI	CCWGG	2 cut(s)	15, 284
BstSCI	CCNGG	2 cut(s)	13, 282
BstSFI	CTRYAG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	231
CseI	GACGC	2 cut(s)	82, 141
CviJI	RGCY	7 cut(s)	6, 70, 81, 87, 95, 105, 167
CviKI_1	RGCY	7 cut(s)	6, 70, 81, 87, 95, 105, 167
DdeI	CTNAG	2 cut(s)	65, 163
DpnI	GATC	1 cut(s)	322
DpnII	GATC	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	2 cut(s)	6, 95
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	2 cut(s)	8, 97
Eco31I	GGTCTC	1 cut(s)	166
Eco53kI	GAGCTC	2 cut(s)	6, 95
EcoICRI	GAGCTC	2 cut(s)	6, 95
EcoRII	CCWGG	2 cut(s)	13, 282
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	2 cut(s)	8, 97
ErhI	CCWWGG	1 cut(s)	153
FaiI	YATR	4 cut(s)	84, 264, 318, 367
Fnu4HI	GCNGC	1 cut(s)	357
FriOI	GRGCYC	2 cut(s)	8, 97
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	3 cut(s)	90, 219, 324
GluI	GCNGC	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	70
HgaI	GACGC	2 cut(s)	82, 141
HindIII	AAGCTT	1 cut(s)	103
HphI	GGTGA	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	116
HpyCH4V	TGCA	2 cut(s)	229, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 230
HpyF3I	CTNAG	2 cut(s)	65, 163
Kzo9I	GATC	1 cut(s)	320
LpnPI	CCDG	7 cut(s)	24, 27, 52, 194, 215, 269, 296
Lsp1109I	GCAGC	1 cut(s)	343
MaeI	CTAG	3 cut(s)	90, 219, 324
MalI	GATC	1 cut(s)	322
MboI	GATC	1 cut(s)	320
MboII	GAAGA	9 cut(s)	54, 57, 60, 63, 66, 69, 111, 217, 353
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	2 cut(s)	8, 97
MluCI	AATT	1 cut(s)	170
MluI	ACGCGT	1 cut(s)	74
MnlI	CCTC	5 cut(s)	32, 119, 122, 200, 304
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	15, 284
MvaI	CCWGG	2 cut(s)	15, 284
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	35, 230
NdeII	GATC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	358
Psp124BI	GAGCTC	2 cut(s)	8, 97
Psp6I	CCWGG	2 cut(s)	13, 282
PspGI	CCWGG	2 cut(s)	13, 282
PsuI	RGATCY	1 cut(s)	320
SacI	GAGCTC	2 cut(s)	8, 97
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	15, 284
SduI	GDGCHC	2 cut(s)	8, 97
SetI	ASST	8 cut(s)	8, 24, 97, 107, 159, 192, 288, 315
SfcI	CTRYAG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	3 cut(s)	224, 233, 257
SspMI	CTAG	3 cut(s)	90, 219, 324
SstI	GAGCTC	2 cut(s)	8, 97
StyD4I	CCNGG	2 cut(s)	13, 282
StyI	CCWWGG	1 cut(s)	153
TaqI	TCGA	1 cut(s)	97
TasI	AATT	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseI	GCWGC	1 cut(s)	356
XspI	CTAG	3 cut(s)	90, 219, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.