Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004339

Physical Location & Seq

Genomic Coordinates Reverse (-)

86781295 .. 86786470

Gene Structure 5176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54121

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2469 bp

ATGATGGGTGGCTTGTTATCATTGGTGCTTCTGGTGCTTCTGGGTTTGTGTGTTAATGGCGAGCCGGGTATGCCACCGGGTCGGAGGGTCCATACTCTGTTCTCCGTGGAGTGTCAGGACTACTTCGACTGGCAGACTGTGGGCCTGATGCACAGCTTCAGGAAGGCCCGGCAACCCGGCCCGATTACCCGACTGCTCAGCTGCACCGACGAGGAGAAGAAGAAGTACAGAGGGATGCATTTGGCTCCAACTTTTGAGGTGCCTTCTATGAGTAGGCACCCAAAGACTGGTGACTGGTATCCTGCCATTAACAAACCTGCTGGAGTTGTGCACTGGCTTAAGCATAGTAAAGAAGCTAAGAATGTTGATTGGGTTGTGATACTGGATGCAGACATGATCATACGGGGGCCGATTGTTCCTTGGGAACTTGGTGCCGAGAAAGGCTATGCTGTGGCAGCATATTATGGGTATTTGATTGGATGCAATAATATTCTGGCTCAATTGCATACAAAGCACCCAGAATTTTGTGATAAAGTTGGTGGGCTTTTAGCAATGCATATAGATGATCTTCGAGCATTGGCACCTATGTGGCTTTCGAAAACAGAAGAAGTGCGAGAAGATAGAGCTCACTGGGGAACTAATATAACTGGTGACATTTATTCAAGCGGATGGATCAGTGAGATGTATGGATACTCTTTTGGTGCAGCAGAGGTTGGTCTTCGGCACAAAATAAATGATAACTTGATGATCTATCCAGGATATATTCCACAAGAGGGTGTTGTGCCTATTCTTCTTCACTATGGCTTGCCATTTAGCGTGGGAAATTGGTCCTTTAGTAAATTAGATAACCATGAAGATGGTATTGTTTATGACTGCGGCCGTCTCTTTCCTGAACCTCCTTATCCAAAAGAGGTTAAACTGATGGAGCCAGATGCACATAAAAGGCGAGGTCTCTTTTTGAATCTAGAGTGCATTAACACTTTGAATGAGGGACTTTTACTTCAACATGCAGCAAATGGTTGCCCTAAGCCAAAGTGGTCAAAATACATGAGCTTTCTGAAAAGCAAAACTTTTGCTGAGCTGACTCGACCAAAACAGCTGACTGCTGCCACTTTAGGAATTGAGGAGAAGGTACAGGCTGTACAGCAGCAGGTTGTAGATGAACCTGTGAAGCCATATCCAAAAATCCACACTTTATTTTCCACAGAATGCACCCCTTACTTCGATTGGCAAACTGTTGGACTTGTCCACAGTTTTCACCTCAGTGGACAGCCTGGAAATATCACGCGATTACTCAGCTGTACTGATGAAGACCTGAAGCAATATACTGGCCATGATCTGGCCCCAACACATTATGTTCCTTCCATGAGCCGACATCCATTAACAGGCGATTGGTATCCGGCAATTAACAAACCAGCTGCAGTCCTTCATTGGCTGAATCATGTAGATACTGACGCAGAGTACATAGTGATTCTTGATGCTGATATGATTATGAGAGGCCCAATTACACCATGGGAATTCAAAGCAGCACGTGGCCAACCAGTTTCAACTCCCTATGACTATCTTATTGGCTGTGACAATGTACTCGCAAAGCTTCATACGAGCCATCCGGAAGCCTGTGACAAGGTTGGGGGTGTAATCATCATGCATATAGATGATCTTCGTCAATTTGCTTTACTATGGTTGCATAAAACCGAGGAAGTCCGGGCAGACAGAGCTCATTATGCCACAAATATTACTGGAGATATATATTCATCTGGTTGGATAAGTGAGATGTATGGTTACTCATTTGGTGCGGCAGAGTTGAAACTAAGGCATCGCATAAGCAGTGAGATACTGATATACCCAGGATATACTCCTTCACCCGGTATAAAATATAGAGTTTTCCACTACGGTTTGGAATACAAAGTTGGAAACTGGAGTTTTGACAAGGCAAATTGGAGGAATACTGACGTGGTCAATAGGTGCTGGGCTCAGTTTCCAGACCCACCAGACCCTTCAACACTTGACCAGACAGACAATAACATACTGCAGAGGGATCTTCTTAGCATAGAATGCATCAAGACACTAAATGAAGCATTACGGCTGCATCATGTGAGGCGGAAGTGTCCTGATCCTAATTCCCTGTCCAACTCAAACTCAGATGCAGCAGACGAAGTTGTCATATCGAGGAAATTTGGCAAGATGAATGTAACTTCTGTTCTAGAAGACAACCATGAGCAAAAGAATCAGTCTCGGGAACTTTCAGAACCTACCGAGACAGATGGGATGTTTAGTTCTGTCAGGTTCTGGGTTATTGCTTTCTGGGCATTCTGTGGCTTGGGCTTCTTGACAGTCGCATCAGTGTTGTTTTCTGGTCGGAAAGGGAAAGGCAAAAGAGGTAAAAGTTATAGAGTTAAGAGACGAAATTCGGGTTCAGGATTCATGGATATTAATGGACGTGATAGGCATTCACAAGTACCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

822

Amino Acids

92.99

Weight (kDa)

6.93

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPAT	PF23452	31 - 255	3.5e-18	Hydroxyproline O-arabinosyltransferase family
HPAT	PF23452	398 - 665	4e-19	Hydroxyproline O-arabinosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01720
fragaria_vesca	FvH4_6g52410
malus_domestica	MD04G1153000.v1.1 MD08G1068600.v1.1 MD09G1018400.v1.1 MD16G1283700.v1.1 MD17G1018800.v1.1
prunus_persica	Prupe.3G298800_v2.0.a1
pyrus_communis	pycom111g01530 pycom15g31850 pycom17g01550 pycom17g01560
rosa_chinensis	RchiOBHm_Chr2g0174041 RchiOBHm_Chr2g0174051
rosa_laevigata	RLG00000022239 RLG00000022240
rosa_multiflora	Rmu_co8300129.1_g000001 Rmu_co8470913.1_g000001 Rmu_sc0037186.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078500 Rroxscaffold_2G00078510
rosa_rugosa	Rorug02G0574200
rosa_samantha	Rh2AG643300 Rh2AG653400 Rh2AG653600 Rh2BG664700 Rh2BG664900 Rh2CG629100 Rh2CG629200 Rh2DG679500 Rh2DG679600
rosa_wichuraiana	Rw2G053670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2159
Acc36I	ACCTGC	2 cut(s)	325, 1141
AccB1I	GGYRCC	4 cut(s)	259, 276, 431, 580
AccB7I	CCANNNNNTGG	2 cut(s)	287, 1339
AccII	CGCG	1 cut(s)	1288
AccIII	TCCGGA	1 cut(s)	1609
AciI	CCGC	4 cut(s)	666, 876, 1796, 2101
AclWI	GGATC	3 cut(s)	680, 2046, 2108
AcoI	YGGCCR	3 cut(s)	877, 1330, 1534
AcsI	RAATTY	4 cut(s)	521, 1517, 2174, 2407
AcuI	CTGAAG	2 cut(s)	142, 1337
AcvI	CACGTG	1 cut(s)	1532
AfaI	GTAC	7 cut(s)	227, 1134, 1143, 1303, 1463, 1584, 2460
AfiI	CCNNNNNNNGG	5 cut(s)	287, 773, 1339, 1385, 1865
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	8 cut(s)	663, 961, 985, 1004, 1522, 1548, 1807, 2001
AjiI	CACGTC	2 cut(s)	1954, 2441
AjnI	CCWGG	3 cut(s)	754, 1273, 1846
AjuI	GAANNNNNNNTTGG	2 cut(s)	1893, 1925
AleI	CACNNNNGTG	2 cut(s)	586, 1263
AloI	GAACNNNNNNTCC	2 cut(s)	2260, 2292
Alw21I	GWGCWC	3 cut(s)	333, 628, 1720
Alw26I	GTCTC	5 cut(s)	887, 956, 2238, 2252, 2395
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	3 cut(s)	680, 2046, 2108
AlwNI	CAGNNNCTG	1 cut(s)	2289
Ama87I	CYCGRG	1 cut(s)	2235
Aor13HI	TCCGGA	1 cut(s)	1609
AoxI	GGCC	9 cut(s)	142, 165, 178, 407, 877, 1330, 1341, 1498, 1534
ApaLI	GTGCAC	1 cut(s)	329
ApoI	RAATTY	4 cut(s)	521, 1517, 2174, 2407
AseI	ATTAAT	1 cut(s)	2433
AspS9I	GGNCC	8 cut(s)	88, 142, 166, 179, 407, 828, 1342, 1499
AsuC2I	CCSGG	6 cut(s)	66, 78, 169, 177, 1706, 1866
AsuHPI	GGTGA	4 cut(s)	302, 662, 1250, 1854
AsuII	TTCGAA	1 cut(s)	596
AvaI	CYCGRG	1 cut(s)	2235
AvaII	GGWCC	2 cut(s)	88, 828
BaeGI	GKGCMC	1 cut(s)	333
BalI	TGGCCA	2 cut(s)	1332, 1536
BanI	GGYRCC	4 cut(s)	259, 276, 431, 580
BanII	GRGCYC	3 cut(s)	628, 1720, 1975
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BbrPI	CACGTG	1 cut(s)	1532
BbsI	GAAGAC	3 cut(s)	710, 1317, 2214
Bbv12I	GWGCWC	3 cut(s)	333, 628, 1720
BccI	CCATC	5 cut(s)	663, 851, 916, 1614, 2258
BceAI	ACGGC	2 cut(s)	864, 2099
BciT130I	CCWGG	3 cut(s)	756, 1275, 1848
BciVI	GTATCC	3 cut(s)	309, 683, 1407
BclI	TGATCA	1 cut(s)	396
BcnI	CCSGG	6 cut(s)	66, 78, 169, 177, 1706, 1866
BcoDI	GTCTC	5 cut(s)	887, 956, 2238, 2252, 2395
BfaI	CTAG	2 cut(s)	965, 2204
BfmI	CTRYAG	2 cut(s)	1419, 2030
BfrI	CTTAAG	1 cut(s)	338
BfuAI	ACCTGC	2 cut(s)	325, 1141
BfuI	GTATCC	3 cut(s)	309, 683, 1407
BlpI	GCTNAGC	2 cut(s)	197, 1077
Bme1390I	CCNGG	9 cut(s)	66, 78, 169, 177, 756, 1275, 1706, 1848, 1866
Bme18I	GGWCC	2 cut(s)	88, 828
BmeT110I	CYCGRG	1 cut(s)	2235
BmgBI	CACGTC	2 cut(s)	1954, 2441
BmgT120I	GGNCC	8 cut(s)	88, 142, 166, 179, 407, 828, 1342, 1499
BmiI	GGNNCC	9 cut(s)	89, 246, 261, 278, 408, 433, 582, 927, 1344
BmrFI	CCNGG	9 cut(s)	66, 78, 169, 177, 756, 1275, 1706, 1848, 1866
BmrI	ACTGGG	1 cut(s)	640
BmuI	ACTGGG	1 cut(s)	640
BpiI	GAAGAC	3 cut(s)	710, 1317, 2214
BpmI	CTGGAG	3 cut(s)	342, 1761, 1939
Bpu10I	CCTNAGC	1 cut(s)	1026
Bpu1102I	GCTNAGC	2 cut(s)	197, 1077
Bpu14I	TTCGAA	1 cut(s)	596
BpuMI	CCSGG	6 cut(s)	66, 78, 169, 177, 1706, 1866
BsaAI	YACGTR	1 cut(s)	1532
BsaBI	GATNNNNATC	1 cut(s)	1395
BsaI	GGTCTC	1 cut(s)	956
BsaJI	CCNNGG	5 cut(s)	105, 419, 1511, 1695, 1846
BsaWI	WCCGGW	1 cut(s)	1609
Bsc4I	CCNNNNNNNGG	5 cut(s)	287, 773, 1339, 1385, 1865
Bse3DI	GCAATG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	1395
BseAI	TCCGGA	1 cut(s)	1609
BseBI	CCWGG	3 cut(s)	756, 1275, 1848
BseDI	CCNNGG	5 cut(s)	105, 419, 1511, 1695, 1846
BseGI	GGATG	7 cut(s)	240, 391, 485, 674, 1375, 1606, 2274
BseJI	GATNNNNATC	1 cut(s)	1395
BseLI	CCNNNNNNNGG	5 cut(s)	287, 773, 1339, 1385, 1865
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	6 cut(s)	211, 1068, 1276, 1309, 1988, 2154
BseRI	GAGGAG	2 cut(s)	227, 1139
BseSI	GKGCMC	1 cut(s)	333
BseX3I	CGGCCG	1 cut(s)	877
BseYI	CCCAGC	1 cut(s)	1968
BsgI	GTGCAG	2 cut(s)	187, 723
Bsh1236I	CGCG	1 cut(s)	1288
Bsh1285I	CGRYCG	1 cut(s)	880
BshFI	GGCC	9 cut(s)	144, 167, 180, 409, 879, 1332, 1343, 1500, 1536
BshNI	GGYRCC	4 cut(s)	259, 276, 431, 580
BsiEI	CGRYCG	1 cut(s)	880
BsiHKAI	GWGCWC	3 cut(s)	333, 628, 1720
BsiHKCI	CYCGRG	1 cut(s)	2235
BsiSI	CCGG	8 cut(s)	65, 77, 169, 177, 1400, 1610, 1705, 1866
BslFI	GGGAC	1 cut(s)	1005
BslI	CCNNNNNNNGG	5 cut(s)	287, 773, 1339, 1385, 1865
BsmAI	GTCTC	5 cut(s)	887, 956, 2238, 2252, 2395
BsmBI	CGTCTC	2 cut(s)	887, 2395
BsmFI	GGGAC	1 cut(s)	1005
BsmI	GAATGC	4 cut(s)	1214, 2060, 2309, 2449
BsnI	GGCC	9 cut(s)	144, 167, 180, 409, 879, 1332, 1343, 1500, 1536
Bso31I	GGTCTC	1 cut(s)	956
BsoBI	CYCGRG	1 cut(s)	2235
Bsp119I	TTCGAA	1 cut(s)	596
Bsp1286I	GDGCHC	4 cut(s)	333, 628, 1720, 1975
Bsp13I	TCCGGA	1 cut(s)	1609
Bsp1407I	TGTACA	1 cut(s)	1141
Bsp143I	GATC	8 cut(s)	396, 565, 672, 747, 1336, 1657, 2038, 2113
Bsp1720I	GCTNAGC	2 cut(s)	197, 1077
Bsp19I	CCATGG	1 cut(s)	1511
BspACI	CCGC	4 cut(s)	666, 876, 1796, 2101
BspANI	GGCC	9 cut(s)	144, 167, 180, 409, 879, 1332, 1343, 1500, 1536
BspCNI	CTCAG	6 cut(s)	210, 1069, 1275, 1308, 1987, 2153
BspEI	TCCGGA	1 cut(s)	1609
BspFNI	CGCG	1 cut(s)	1288
BspLI	GGNNCC	9 cut(s)	89, 246, 261, 278, 408, 433, 582, 927, 1344
BspMAI	CTGCAG	2 cut(s)	1423, 2034
BspMI	ACCTGC	2 cut(s)	325, 1141
BspPI	GGATC	3 cut(s)	680, 2046, 2108
BspT104I	TTCGAA	1 cut(s)	596
BspT107I	GGYRCC	4 cut(s)	259, 276, 431, 580
BspTI	CTTAAG	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	956
BsrDI	GCAATG	1 cut(s)	558
BsrGI	TGTACA	1 cut(s)	1141
BssECI	CCNNGG	5 cut(s)	105, 419, 1511, 1695, 1846
BssMI	GATC	8 cut(s)	396, 565, 672, 747, 1336, 1657, 2038, 2113
BssT1I	CCWWGG	2 cut(s)	419, 1511
Bst2UI	CCWGG	3 cut(s)	756, 1275, 1848
Bst4CI	ACNGT	5 cut(s)	139, 1237, 1253, 1895, 2335
BstAFI	CTTAAG	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	2055
BstAUI	TGTACA	1 cut(s)	1141
BstBAI	YACGTR	1 cut(s)	1532
BstBI	TTCGAA	1 cut(s)	596
BstC8I	GCNNGC	2 cut(s)	62, 806
BstDSI	CCRYGG	2 cut(s)	105, 1511
BstF5I	GGATG	7 cut(s)	240, 391, 485, 674, 1375, 1606, 2274
BstFNI	CGCG	1 cut(s)	1288
BstKTI	GATC	8 cut(s)	399, 568, 675, 750, 1339, 1660, 2041, 2116
BstMAI	GTCTC	5 cut(s)	887, 956, 2238, 2252, 2395
BstMBI	GATC	8 cut(s)	396, 565, 672, 747, 1336, 1657, 2038, 2113
BstMCI	CGRYCG	1 cut(s)	880
BstMWI	GCNNNNNNNGC	8 cut(s)	34, 70, 455, 511, 1715, 1724, 2055, 2306
BstNI	CCWGG	3 cut(s)	756, 1275, 1848
BstNSI	RCATGY	1 cut(s)	1010
BstSCI	CCNGG	9 cut(s)	64, 76, 167, 175, 754, 1273, 1704, 1846, 1864
BstSFI	CTRYAG	2 cut(s)	1419, 2030
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	1 cut(s)	1288
BstV2I	GAAGAC	3 cut(s)	710, 1317, 2214
BstX2I	RGATCY	1 cut(s)	2038
BstXI	CCANNNNNNTGG	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	2038
BstZI	CGGCCG	1 cut(s)	877
BsuI	GTATCC	3 cut(s)	309, 683, 1407
BsuRI	GGCC	9 cut(s)	144, 167, 180, 409, 879, 1332, 1343, 1500, 1536
BtgI	CCRYGG	2 cut(s)	105, 1511
BtgZI	GCGATG	1 cut(s)	1802
BtrI	CACGTC	2 cut(s)	1954, 2441
BtsCI	GGATG	7 cut(s)	240, 391, 485, 674, 1375, 1606, 2274
BtsI	GCAGTG	1 cut(s)	1834
BtsIMutI	CAGTG	6 cut(s)	331, 628, 682, 1270, 1834, 2349
BveI	ACCTGC	2 cut(s)	325, 1141
Cac8I	GCNNGC	2 cut(s)	62, 806
CaiI	CAGNNNCTG	1 cut(s)	2289
Cfr13I	GGNCC	8 cut(s)	88, 142, 166, 179, 407, 828, 1342, 1499
CseI	GACGC	1 cut(s)	1463
Csp6I	GTAC	7 cut(s)	226, 1133, 1142, 1302, 1462, 1583, 2459
CviQI	GTAC	7 cut(s)	226, 1133, 1142, 1302, 1462, 1583, 2459
DpnI	GATC	8 cut(s)	398, 567, 674, 749, 1338, 1659, 2040, 2115
DpnII	GATC	8 cut(s)	396, 565, 672, 747, 1336, 1657, 2038, 2113
DrdI	GACNNNNNNGTC	1 cut(s)	2159
DseDI	GACNNNNNNGTC	1 cut(s)	2159
EaeI	YGGCCR	3 cut(s)	877, 1330, 1534
EagI	CGGCCG	1 cut(s)	877
EciI	GGCGGA	1 cut(s)	2116
Ecl136II	GAGCTC	2 cut(s)	626, 1718
EclXI	CGGCCG	1 cut(s)	877
Eco130I	CCWWGG	2 cut(s)	419, 1511
Eco24I	GRGCYC	3 cut(s)	628, 1720, 1975
Eco31I	GGTCTC	1 cut(s)	956
Eco47I	GGWCC	2 cut(s)	88, 828
Eco52I	CGGCCG	1 cut(s)	877
Eco53kI	GAGCTC	2 cut(s)	626, 1718
Eco57I	CTGAAG	2 cut(s)	142, 1337
Eco72I	CACGTG	1 cut(s)	1532
Eco88I	CYCGRG	1 cut(s)	2235
EcoICRI	GAGCTC	2 cut(s)	626, 1718
EcoRI	GAATTC	1 cut(s)	1517
EcoRII	CCWGG	3 cut(s)	754, 1273, 1846
EcoT14I	CCWWGG	2 cut(s)	419, 1511
EcoT22I	ATGCAT	4 cut(s)	240, 558, 1650, 2060
EcoT38I	GRGCYC	3 cut(s)	628, 1720, 1975
ErhI	CCWWGG	2 cut(s)	419, 1511
Esp3I	CGTCTC	2 cut(s)	887, 2395
FalI	AAGNNNNNCTT	2 cut(s)	1054, 1086
FaqI	GGGAC	1 cut(s)	1005
FbaI	TGATCA	1 cut(s)	396
FokI	GGATG	7 cut(s)	247, 398, 492, 681, 1362, 1593, 2281
FriOI	GRGCYC	3 cut(s)	628, 1720, 1975
FspBI	CTAG	2 cut(s)	965, 2204
GsaI	CCCAGC	1 cut(s)	1972
GsuI	CTGGAG	3 cut(s)	342, 1761, 1939
HaeIII	GGCC	9 cut(s)	144, 167, 180, 409, 879, 1332, 1343, 1500, 1536
HapII	CCGG	8 cut(s)	65, 77, 169, 177, 1400, 1610, 1705, 1866
HgaI	GACGC	1 cut(s)	1463
HindIII	AAGCTT	1 cut(s)	1592
HinfI	GANTC	6 cut(s)	961, 1084, 1438, 1471, 2227, 2421
HpaII	CCGG	8 cut(s)	65, 77, 169, 177, 1400, 1610, 1705, 1866
HphI	GGTGA	4 cut(s)	302, 662, 1250, 1854
Hpy166II	GTNNAC	3 cut(s)	331, 1249, 1268
Hpy188I	TCNGA	5 cut(s)	84, 1059, 2143, 2248, 2361
Hpy8I	GTNNAC	3 cut(s)	331, 1249, 1268
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	7 cut(s)	157, 273, 1123, 1371, 1436, 1869, 2007
HpyCH4III	ACNGT	5 cut(s)	139, 1237, 1253, 1895, 2335
HpyCH4IV	ACGT	3 cut(s)	1531, 1953, 2440
HpyF10VI	GCNNNNNNNGC	8 cut(s)	34, 70, 455, 511, 1715, 1724, 2055, 2306
HpySE526I	ACGT	3 cut(s)	1531, 1953, 2440
Kpn2I	TCCGGA	1 cut(s)	1609
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	8 cut(s)	396, 565, 672, 747, 1336, 1657, 2038, 2113
LmnI	GCTCC	2 cut(s)	250, 925
MaeI	CTAG	2 cut(s)	965, 2204
MaeII	ACGT	3 cut(s)	1531, 1953, 2440
MaeIII	GTNAC	6 cut(s)	290, 650, 1574, 1619, 1781, 2191
MalI	GATC	8 cut(s)	398, 567, 674, 749, 1338, 1659, 2040, 2115
MboI	GATC	8 cut(s)	396, 565, 672, 747, 1336, 1657, 2038, 2113
MfeI	CAATTG	1 cut(s)	500
MflI	RGATCY	1 cut(s)	2038
MhlI	GDGCHC	4 cut(s)	333, 628, 1720, 1975
MlsI	TGGCCA	2 cut(s)	1332, 1536
MluNI	TGGCCA	2 cut(s)	1332, 1536
MlyI	GAGTC	1 cut(s)	1078
MmeI	TCCRAC	7 cut(s)	62, 272, 1219, 1742, 1891, 2154, 2339
Mox20I	TGGCCA	2 cut(s)	1332, 1536
Mph1103I	ATGCAT	4 cut(s)	240, 558, 1650, 2060
MroI	TCCGGA	1 cut(s)	1609
MscI	TGGCCA	2 cut(s)	1332, 1536
MseI	TTAA	9 cut(s)	54, 309, 339, 915, 975, 1382, 1407, 2397, 2433
MslI	CAYNNNNRTG	5 cut(s)	561, 586, 855, 1263, 1653
Msp20I	TGGCCA	2 cut(s)	1332, 1536
MspA1I	CMGCKG	4 cut(s)	201, 1099, 1299, 1418
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	8 cut(s)	65, 77, 169, 177, 1400, 1610, 1705, 1866
MspR9I	CCNGG	9 cut(s)	66, 78, 169, 177, 756, 1275, 1706, 1848, 1866
MunI	CAATTG	1 cut(s)	500
Mva1269I	GAATGC	4 cut(s)	1214, 2060, 2309, 2449
MvaI	CCWGG	3 cut(s)	756, 1275, 1848
MvnI	CGCG	1 cut(s)	1288
MwoI	GCNNNNNNNGC	8 cut(s)	34, 70, 455, 511, 1715, 1724, 2055, 2306
NciI	CCSGG	6 cut(s)	66, 78, 169, 177, 1706, 1866
NcoI	CCATGG	1 cut(s)	1511
NdeII	GATC	8 cut(s)	396, 565, 672, 747, 1336, 1657, 2038, 2113
NlaIV	GGNNCC	9 cut(s)	89, 246, 261, 278, 408, 433, 582, 927, 1344
NmeAIII	GCCGAG	1 cut(s)	460
NmuCI	GTSAC	4 cut(s)	290, 650, 1574, 1619
NsiI	ATGCAT	4 cut(s)	240, 558, 1650, 2060
NspI	RCATGY	1 cut(s)	1010
NspV	TTCGAA	1 cut(s)	596
OliI	CACNNNNGTG	2 cut(s)	586, 1263
PctI	GAATGC	4 cut(s)	1214, 2060, 2309, 2449
PfeI	GAWTC	5 cut(s)	961, 1438, 1471, 2227, 2421
PflFI	GACNNNGTC	1 cut(s)	1955
PflMI	CCANNNNNTGG	2 cut(s)	287, 1339
PfoI	TCCNGGA	1 cut(s)	754
PleI	GAGTC	1 cut(s)	1078
PmaCI	CACGTG	1 cut(s)	1532
PmlI	CACGTG	1 cut(s)	1532
PpsI	GAGTC	1 cut(s)	1078
Ppu21I	YACGTR	1 cut(s)	1532
PshBI	ATTAAT	1 cut(s)	2433
Psp124BI	GAGCTC	2 cut(s)	628, 1720
Psp6I	CCWGG	3 cut(s)	754, 1273, 1846
PspCI	CACGTG	1 cut(s)	1532
PspFI	CCCAGC	1 cut(s)	1968
PspGI	CCWGG	3 cut(s)	754, 1273, 1846
PspN4I	GGNNCC	9 cut(s)	89, 246, 261, 278, 408, 433, 582, 927, 1344
PspPI	GGNCC	8 cut(s)	88, 142, 166, 179, 407, 828, 1342, 1499
PsrI	GAACNNNNNNTAC	2 cut(s)	2184, 2216
PstI	CTGCAG	2 cut(s)	1423, 2034
PstNI	CAGNNNCTG	1 cut(s)	2289
PsuI	RGATCY	1 cut(s)	2038
PsyI	GACNNNGTC	1 cut(s)	1955
PvuII	CAGCTG	4 cut(s)	201, 1099, 1299, 1418
RsaI	GTAC	7 cut(s)	227, 1134, 1143, 1303, 1463, 1584, 2460
RsaNI	GTAC	7 cut(s)	226, 1133, 1142, 1302, 1462, 1583, 2459
RseI	CAYNNNNRTG	5 cut(s)	561, 586, 855, 1263, 1653
SacI	GAGCTC	2 cut(s)	628, 1720
SaqAI	TTAA	9 cut(s)	54, 309, 339, 915, 975, 1382, 1407, 2397, 2433
Sau3AI	GATC	8 cut(s)	396, 565, 672, 747, 1336, 1657, 2038, 2113
Sau96I	GGNCC	8 cut(s)	88, 142, 166, 179, 407, 828, 1342, 1499
SchI	GAGTC	1 cut(s)	1078
ScrFI	CCNGG	9 cut(s)	66, 78, 169, 177, 756, 1275, 1706, 1848, 1866
SduI	GDGCHC	4 cut(s)	333, 628, 1720, 1975
SfcI	CTRYAG	2 cut(s)	1419, 2030
SfuI	TTCGAA	1 cut(s)	596
SinI	GGWCC	2 cut(s)	88, 828
SmiMI	CAYNNNNRTG	5 cut(s)	561, 586, 855, 1263, 1653
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SsiI	CCGC	4 cut(s)	666, 876, 1796, 2101
SspI	AATATT	2 cut(s)	490, 1735
SspMI	CTAG	2 cut(s)	965, 2204
SstI	GAGCTC	2 cut(s)	628, 1720
StyD4I	CCNGG	9 cut(s)	64, 76, 167, 175, 754, 1273, 1704, 1846, 1864
StyI	CCWWGG	2 cut(s)	419, 1511
TaaI	ACNGT	5 cut(s)	139, 1237, 1253, 1895, 2335
TaiI	ACGT	3 cut(s)	1534, 1956, 2443
TaqI	TCGA	6 cut(s)	126, 571, 596, 1087, 1224, 2168
TatI	WGTACW	5 cut(s)	225, 1141, 1301, 1461, 1582
TauI	GCSGC	2 cut(s)	879, 1799
TfiI	GAWTC	5 cut(s)	961, 1438, 1471, 2227, 2421
Tru1I	TTAA	9 cut(s)	54, 309, 339, 915, 975, 1382, 1407, 2397, 2433
Tru9I	TTAA	9 cut(s)	54, 309, 339, 915, 975, 1382, 1407, 2397, 2433
TscAI	CASTG	6 cut(s)	338, 635, 682, 1270, 1834, 2349
TseFI	GTSAC	4 cut(s)	290, 650, 1574, 1619
Tsp45I	GTSAC	4 cut(s)	290, 650, 1574, 1619
TspDTI	ATGAA	9 cut(s)	867, 1176, 1323, 1418, 1586, 1743, 2088, 2201, 2413
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	6 cut(s)	338, 635, 682, 1270, 1834, 2349
Tth111I	GACNNNGTC	1 cut(s)	1955
Van91I	CCANNNNNTGG	2 cut(s)	287, 1339
Vha464I	CTTAAG	1 cut(s)	338
VneI	GTGCAC	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	88, 828
VspI	ATTAAT	1 cut(s)	2433
XapI	RAATTY	4 cut(s)	521, 1517, 2174, 2407
XbaI	TCTAGA	2 cut(s)	964, 2203
XceI	RCATGY	1 cut(s)	1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1509
XspI	CTAG	2 cut(s)	965, 2204
Zsp2I	ATGCAT	4 cut(s)	240, 558, 1650, 2060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.