RLG00000022240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004339
Physical Location & Seq
Reverse (-)
81887862 .. 81891237
3376 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022240

Sequence Viewer

Length: 1032 bp
ATGGGTGGCTTGTTATCATTGTTGCTGGTGCTTCTGGGTTTGTGTGTTAATGGCGAGTCGGGTATGGAACCGGGACGGAGGGTCCATACTCTGTTCTCGGTGGAGTGTCAGGACTACTTCGACTGGCAGACTGTGGGCCTGATGCACAGCTTCAGGAAGGCCCGGCAACCCGGCCTGATTACCCGACTGCTCAGCTGTACCGACGAGGAGAAGATGAAGTACAGAGGCATGCATTTGGCTCCAACTTTTGAGGTGCCTTCTATGAGTAGGCACCCTAAGACTGGTGACTGGTACCCTGCCATTAACAAACCTGCTGGAGTTGTGCACTGGCTTAAGCATAGTAAAGAAGCAAAGAATGTTGATTGGGTTGTGATACTGGATGCAGACATGGTCATACGGGGGCCGATTGTTCCTTGGGAACTTGGCGCCGAGGCAGCATATCATGGGTATTTGGTTGAATGCAATAACATTCTGCCTCAATTGCATACAAAGCATCCAGAACTTTGTGATAGATTTGGTGGGCTCTTAGCAATGCATATAGATGATCTTCAAGCATTGGCACCTATGTGGCTTTCGAAAACAGAAGAAGTGCGAGAAGATAGAGCTCACTGTGGACCTAATATAACTGGTGACATTTATGGAAGCGGATGGATCAGTGAGATGTATGGATACTCTTTTGGTGCAGCAGAGGTTAGACTGATGGAACCAGATGAACATAAAAGGCGGGGTCTCTTTTTAAATCTAGAGTGCATTAACACTTTGAATGAGGGACTTTTCCTTCAACATGCAGCAAATGGTTGCCCTAAGCCAAGGTGGTCAAAATACATGAGCTTTATGAAAAGCAAAATTTTTGCTGAGCTGACTCAACCAAAACAGCTGACTGCTGCCACTTTGAGAATTGAGGAGAAGGTACAGGCTGTACAGCAGCAGGCTATAGATGAACCTGCGAAGCCATATCCCAAAAATCCACACATTATTTTCAACATTGTAAATTTCCTACCTTGTGGTTGCAAATTCCTCAAAATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

38.84

Weight (kDa)

6.91

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPAT PF23452 29 - 231 1e-11 Hydroxyproline O-arabinosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 319, 952
Acc65I GGTACC 1 cut(s) 291
AccB1I GGYRCC 5 cut(s) 253, 270, 291, 425, 559
AciI CCGC 2 cut(s) 645, 724
AclWI GGATC 1 cut(s) 659
AcsI RAATTY 4 cut(s) 846, 991, 1013, 1023
AcuI CTGAAG 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 426
AfaI GTAC 5 cut(s) 199, 221, 293, 912, 921
AfiI CCNNNNNNNGG 1 cut(s) 281
AflII CTTAAG 1 cut(s) 332
AgsI TTSAA 5 cut(s) 458, 551, 763, 782, 982
AhdI GACNNNNNGTC 1 cut(s) 80
AleI CACNNNNGTG 1 cut(s) 565
AluBI AGCT 6 cut(s) 150, 195, 605, 831, 859, 877
AluI AGCT 6 cut(s) 150, 195, 605, 831, 859, 877
Alw21I GWGCWC 2 cut(s) 327, 607
Alw26I GTCTC 1 cut(s) 734
Alw44I GTGCAC 1 cut(s) 323
AlwI GGATC 1 cut(s) 659
AoxI GGCC 4 cut(s) 136, 159, 172, 401
ApaLI GTGCAC 1 cut(s) 323
ApeKI GCWGC 5 cut(s) 434, 683, 788, 884, 925
ApoI RAATTY 4 cut(s) 846, 991, 1013, 1023
Asp718I GGTACC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 5 cut(s) 82, 136, 160, 401, 614
AsuC2I CCSGG 3 cut(s) 72, 163, 171
AsuHPI GGTGA 2 cut(s) 296, 641
AsuII TTCGAA 1 cut(s) 575
AvaII GGWCC 2 cut(s) 82, 614
BaeGI GKGCMC 1 cut(s) 327
BanI GGYRCC 5 cut(s) 253, 270, 291, 425, 559
BanII GRGCYC 2 cut(s) 525, 607
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
Bbv12I GWGCWC 2 cut(s) 327, 607
BbvI GCAGC 5 cut(s) 446, 695, 800, 871, 937
BccI CCATC 2 cut(s) 642, 694
BciVI GTATCC 1 cut(s) 662
BcnI CCSGG 3 cut(s) 72, 163, 171
BcoDI GTCTC 1 cut(s) 734
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 1 cut(s) 933
BfoI RGCGCY 1 cut(s) 429
BfrI CTTAAG 1 cut(s) 332
BfuAI ACCTGC 2 cut(s) 319, 952
BfuI GTATCC 1 cut(s) 662
BisI GCNGC 5 cut(s) 435, 684, 789, 885, 926
BlpI GCTNAGC 2 cut(s) 191, 855
BlsI GCNGC 5 cut(s) 436, 685, 790, 886, 927
Bme1390I CCNGG 3 cut(s) 72, 163, 171
Bme18I GGWCC 2 cut(s) 82, 614
BmeRI GACNNNNNGTC 1 cut(s) 80
BmgT120I GGNCC 5 cut(s) 82, 136, 160, 401, 614
BmrFI CCNGG 3 cut(s) 72, 163, 171
BmsI GCATC 3 cut(s) 132, 370, 502
BpmI CTGGAG 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 804
Bpu1102I GCTNAGC 2 cut(s) 191, 855
Bpu14I TTCGAA 1 cut(s) 575
BpuMI CCSGG 3 cut(s) 72, 163, 171
BsaHI GRCGYC 1 cut(s) 426
BsaI GGTCTC 1 cut(s) 734
BsaJI CCNNGG 3 cut(s) 413, 429, 809
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 6 cut(s) 128, 286, 293, 332, 381, 631
Bse3DI GCAATG 1 cut(s) 537
BseDI CCNNGG 3 cut(s) 413, 429, 809
BseGI GGATG 3 cut(s) 385, 493, 653
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 2 cut(s) 205, 846
BseNI ACTGG 6 cut(s) 128, 286, 293, 332, 381, 631
BseRI GAGGAG 2 cut(s) 221, 917
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 5 cut(s) 446, 695, 800, 871, 937
BsgI GTGCAG 1 cut(s) 702
BshFI GGCC 4 cut(s) 138, 161, 174, 403
BshNI GGYRCC 5 cut(s) 253, 270, 291, 425, 559
BsiHKAI GWGCWC 2 cut(s) 327, 607
BsiSI CCGG 3 cut(s) 71, 163, 171
BslFI GGGAC 2 cut(s) 87, 783
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 734
BsmFI GGGAC 2 cut(s) 87, 783
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 4 cut(s) 138, 161, 174, 403
Bso31I GGTCTC 1 cut(s) 734
Bsp119I TTCGAA 1 cut(s) 575
Bsp1286I GDGCHC 3 cut(s) 327, 525, 607
Bsp1407I TGTACA 1 cut(s) 919
Bsp143I GATC 2 cut(s) 544, 651
Bsp1720I GCTNAGC 2 cut(s) 191, 855
BspACI CCGC 2 cut(s) 645, 724
BspANI GGCC 4 cut(s) 138, 161, 174, 403
BspCNI CTCAG 2 cut(s) 204, 847
BspMI ACCTGC 2 cut(s) 319, 952
BspPI GGATC 1 cut(s) 659
BspT104I TTCGAA 1 cut(s) 575
BspT107I GGYRCC 5 cut(s) 253, 270, 291, 425, 559
BspTI CTTAAG 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 734
BsrDI GCAATG 1 cut(s) 537
BsrGI TGTACA 1 cut(s) 919
BsrI ACTGG 6 cut(s) 128, 286, 293, 332, 381, 631
BssECI CCNNGG 3 cut(s) 413, 429, 809
BssMI GATC 2 cut(s) 544, 651
BssNI GRCGYC 1 cut(s) 426
BssT1I CCWWGG 2 cut(s) 413, 809
Bst4CI ACNGT 2 cut(s) 133, 611
BstACI GRCGYC 1 cut(s) 426
BstAFI CTTAAG 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 919
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 2 cut(s) 230, 930
BstDEI CTNAG 5 cut(s) 191, 276, 526, 804, 855
BstF5I GGATG 3 cut(s) 385, 493, 653
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 1 cut(s) 428
BstKTI GATC 2 cut(s) 547, 654
BstMAI GTCTC 1 cut(s) 734
BstMBI GATC 2 cut(s) 544, 651
BstMWI GCNNNNNNNGC 3 cut(s) 434, 481, 490
BstNSI RCATGY 2 cut(s) 232, 788
BstSCI CCNGG 3 cut(s) 70, 161, 169
BstSFI CTRYAG 1 cut(s) 933
BstSLI GKGCMC 1 cut(s) 327
BstV1I GCAGC 5 cut(s) 446, 695, 800, 871, 937
BsuI GTATCC 1 cut(s) 662
BsuRI GGCC 4 cut(s) 138, 161, 174, 403
BtsCI GGATG 3 cut(s) 385, 493, 653
BtsIMutI CAGTG 3 cut(s) 325, 607, 661
BveI ACCTGC 2 cut(s) 319, 952
Cac8I GCNNGC 2 cut(s) 230, 930
CfoI GCGC 1 cut(s) 428
Cfr13I GGNCC 5 cut(s) 82, 136, 160, 401, 614
Csp6I GTAC 5 cut(s) 198, 220, 292, 911, 920
CviAII CATG 5 cut(s) 229, 388, 443, 785, 826
CviQI GTAC 5 cut(s) 198, 220, 292, 911, 920
DdeI CTNAG 5 cut(s) 191, 276, 526, 804, 855
DinI GGCGCC 1 cut(s) 427
DpnI GATC 2 cut(s) 546, 653
DpnII GATC 2 cut(s) 544, 651
DraI TTTAAA 1 cut(s) 738
DriI GACNNNNNGTC 1 cut(s) 80
Eam1105I GACNNNNNGTC 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 605
Eco130I CCWWGG 2 cut(s) 413, 809
Eco24I GRGCYC 2 cut(s) 525, 607
Eco31I GGTCTC 1 cut(s) 734
Eco47I GGWCC 2 cut(s) 82, 614
Eco53kI GAGCTC 1 cut(s) 605
Eco57I CTGAAG 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 605
EcoT14I CCWWGG 2 cut(s) 413, 809
EcoT22I ATGCAT 2 cut(s) 234, 537
EcoT38I GRGCYC 2 cut(s) 525, 607
EgeI GGCGCC 1 cut(s) 427
EheI GGCGCC 1 cut(s) 427
ErhI CCWWGG 2 cut(s) 413, 809
FaeI CATG 5 cut(s) 232, 391, 446, 788, 829
FaqI GGGAC 2 cut(s) 87, 783
FatI CATG 5 cut(s) 228, 387, 442, 784, 825
FauI CCCGC 1 cut(s) 717
Fnu4HI GCNGC 5 cut(s) 435, 684, 789, 885, 926
FokI GGATG 3 cut(s) 392, 480, 660
FriOI GRGCYC 2 cut(s) 525, 607
Fsp4HI GCNGC 5 cut(s) 435, 684, 789, 885, 926
FspBI CTAG 1 cut(s) 743
GlaI GCGC 1 cut(s) 427
GluI GCNGC 5 cut(s) 435, 684, 789, 885, 926
GsuI CTGGAG 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 4 cut(s) 138, 161, 174, 403
HapII CCGG 3 cut(s) 71, 163, 171
HhaI GCGC 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 426
Hin1II CATG 5 cut(s) 232, 391, 446, 788, 829
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HinfI GANTC 2 cut(s) 56, 862
HpaII CCGG 3 cut(s) 71, 163, 171
HphI GGTGA 2 cut(s) 296, 641
Hpy166II GTNNAC 2 cut(s) 325, 614
Hpy188III TCNNGA 4 cut(s) 110, 154, 497, 743
Hpy8I GTNNAC 2 cut(s) 325, 614
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 4 cut(s) 151, 267, 788, 901
HpyCH4III ACNGT 2 cut(s) 133, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 481, 490
HpyF3I CTNAG 5 cut(s) 191, 276, 526, 804, 855
Hsp92I GRCGYC 1 cut(s) 426
Hsp92II CATG 5 cut(s) 232, 391, 446, 788, 829
HspAI GCGC 1 cut(s) 426
KasI GGCGCC 1 cut(s) 425
KpnI GGTACC 1 cut(s) 295
Kzo9I GATC 2 cut(s) 544, 651
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 5 cut(s) 446, 695, 800, 871, 937
LweI GCATC 3 cut(s) 132, 370, 502
MaeI CTAG 1 cut(s) 743
MaeIII GTNAC 2 cut(s) 284, 629
MalI GATC 2 cut(s) 546, 653
MboI GATC 2 cut(s) 544, 651
MboII GAAGA 4 cut(s) 223, 539, 596, 608
MfeI CAATTG 1 cut(s) 479
MhlI GDGCHC 3 cut(s) 327, 525, 607
MluCI AATT 6 cut(s) 479, 846, 897, 991, 1013, 1023
Mly113I GGCGCC 1 cut(s) 426
MlyI GAGTC 2 cut(s) 65, 856
MmeI TCCRAC 1 cut(s) 266
Mph1103I ATGCAT 2 cut(s) 234, 537
MseI TTAA 5 cut(s) 48, 303, 333, 737, 753
MslI CAYNNNNRTG 2 cut(s) 540, 565
MspA1I CMGCKG 2 cut(s) 195, 877
MspCI CTTAAG 1 cut(s) 332
MspI CCGG 3 cut(s) 71, 163, 171
MspR9I CCNGG 3 cut(s) 72, 163, 171
MunI CAATTG 1 cut(s) 479
Mva1269I GAATGC 1 cut(s) 464
MwoI GCNNNNNNNGC 3 cut(s) 434, 481, 490
NarI GGCGCC 1 cut(s) 426
NciI CCSGG 3 cut(s) 72, 163, 171
NdeII GATC 2 cut(s) 544, 651
NlaIII CATG 5 cut(s) 232, 391, 446, 788, 829
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 2 cut(s) 284, 629
NsiI ATGCAT 2 cut(s) 234, 537
NspI RCATGY 2 cut(s) 232, 788
NspV TTCGAA 1 cut(s) 575
OliI CACNNNNGTG 1 cut(s) 565
PaeI GCATGC 1 cut(s) 232
PctI GAATGC 1 cut(s) 464
PflFI GACNNNGTC 1 cut(s) 389
PkrI GCNGC 5 cut(s) 436, 685, 790, 886, 927
PleI GAGTC 2 cut(s) 64, 856
PluTI GGCGCC 1 cut(s) 429
PpsI GAGTC 2 cut(s) 64, 856
Psp124BI GAGCTC 1 cut(s) 607
PspPI GGNCC 5 cut(s) 82, 136, 160, 401, 614
PsyI GACNNNGTC 1 cut(s) 389
PvuII CAGCTG 2 cut(s) 195, 877
RsaI GTAC 5 cut(s) 199, 221, 293, 912, 921
RsaNI GTAC 5 cut(s) 198, 220, 292, 911, 920
RseI CAYNNNNRTG 2 cut(s) 540, 565
SacI GAGCTC 1 cut(s) 607
SaqAI TTAA 5 cut(s) 48, 303, 333, 737, 753
SatI GCNGC 5 cut(s) 435, 684, 789, 885, 926
Sau3AI GATC 2 cut(s) 544, 651
Sau96I GGNCC 5 cut(s) 82, 136, 160, 401, 614
SchI GAGTC 2 cut(s) 65, 856
ScrFI CCNGG 3 cut(s) 72, 163, 171
SduI GDGCHC 3 cut(s) 327, 525, 607
SfaNI GCATC 3 cut(s) 132, 370, 502
SfcI CTRYAG 1 cut(s) 933
SfoI GGCGCC 1 cut(s) 427
SfuI TTCGAA 1 cut(s) 575
SinI GGWCC 2 cut(s) 82, 614
SmiMI CAYNNNNRTG 2 cut(s) 540, 565
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SphI GCATGC 1 cut(s) 232
Sse9I AATT 6 cut(s) 479, 846, 897, 991, 1013, 1023
SsiI CCGC 2 cut(s) 645, 724
SspDI GGCGCC 1 cut(s) 425
SspMI CTAG 1 cut(s) 743
SstI GAGCTC 1 cut(s) 607
StyD4I CCNGG 3 cut(s) 70, 161, 169
StyI CCWWGG 2 cut(s) 413, 809
TaaI ACNGT 2 cut(s) 133, 611
TaqI TCGA 2 cut(s) 120, 575
TasI AATT 6 cut(s) 479, 846, 897, 991, 1013, 1023
TatI WGTACW 2 cut(s) 219, 919
Tru1I TTAA 5 cut(s) 48, 303, 333, 737, 753
Tru9I TTAA 5 cut(s) 48, 303, 333, 737, 753
TscAI CASTG 3 cut(s) 332, 614, 661
TseFI GTSAC 2 cut(s) 284, 629
TseI GCWGC 5 cut(s) 434, 683, 788, 884, 925
Tsp45I GTSAC 2 cut(s) 284, 629
TspDTI ATGAA 4 cut(s) 230, 726, 851, 954
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 3 cut(s) 332, 614, 661
Tth111I GACNNNGTC 1 cut(s) 389
Vha464I CTTAAG 1 cut(s) 332
VneI GTGCAC 1 cut(s) 323
VpaK11BI GGWCC 2 cut(s) 82, 614
XapI RAATTY 4 cut(s) 846, 991, 1013, 1023
XbaI TCTAGA 1 cut(s) 742
XceI RCATGY 2 cut(s) 232, 788
XspI CTAG 1 cut(s) 743
Zsp2I ATGCAT 2 cut(s) 234, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.