Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8470913.1

Orthogroup ID

OG0004339

Physical Location & Seq

Genomic Coordinates Reverse (-)

557 .. 1870

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8470913.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgattataagaggcccaattacaccatgggaattcaaagcagcacgtggccaaccagtttcaactccctatgaatatcttattggctgtgacaatgtactcgcaaagcttcatacgagccatccggaagcctgtgacaaggttgggggtgtaatcatcatgcatatagatgatcttcgtcaatttgctttactatggttgcataaaaccgaggaagtccgggcagacagagctcattatgccacaaatattactggagatatatattcatctggttggataagtgagatgtatggttactcatttggtgcggcagagttgaaactaaggcatcgcataagcagtgagatactgatatacccaggatatactccttcacccggtataaaatatagagttttccactacggtttggaatacaaagttggaaactggagttttgacaaggcaaattggaggaatactgacgtggtcaataggtgctgggctcagtttccagacccaccagacccttcaacacttgaccagacagacaataacatactgcagagggatcttcttagcatagaatgcatcaagacactaaatgaagcattacggctgcatcatgtgaggcggaagtgtcctgatcctaattccctgtccaactcaaactcagatgcagcagacgaagttgtcatatcgaggaaatttggcaagatgaatgtaacttctgttctagaagacaaccatgagcaaaagaatcagtctcgggaactttcagaacctaccgagacagatgggatgtttagttctgtcaggttctgggttattgctttctgggcattctgtggcctgggcttcttgacagtcgcgtcagtgttgttttctggtcggaaagggaaaggcaaaagaggtaaaagttatagagttaagagacgaaattcgggttcaggattcatggatattaatggacgtgataggcattcacaagtaccattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

37.19

Weight (kDa)

8.79

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01720
fragaria_vesca	FvH4_6g52410
malus_domestica	MD04G1153000.v1.1 MD08G1068600.v1.1 MD09G1018400.v1.1 MD16G1283700.v1.1 MD17G1018800.v1.1
prunus_persica	Prupe.3G298800_v2.0.a1
pyrus_communis	pycom111g01530 pycom15g31850 pycom17g01550 pycom17g01560
rosa_chinensis	RchiOBHm_Chr2g0174041 RchiOBHm_Chr2g0174051
rosa_laevigata	RLG00000022239 RLG00000022240
rosa_multiflora	Rmu_co8300129.1_g000001 Rmu_co8470913.1_g000001 Rmu_sc0037186.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078500 Rroxscaffold_2G00078510
rosa_rugosa	Rorug02G0574200
rosa_samantha	Rh2AG643300 Rh2AG653400 Rh2AG653600 Rh2BG664700 Rh2BG664900 Rh2CG629100 Rh2CG629200 Rh2DG679500 Rh2DG679600
rosa_wichuraiana	Rw2G053670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	8
AasI	GACNNNNNNGTC	2 cut(s)	674, 853
AccII	CGCG	1 cut(s)	854
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	2 cut(s)	311, 616
AclWI	GGATC	2 cut(s)	561, 623
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	3 cut(s)	32, 689, 922
AcvI	CACGTG	1 cut(s)	47
AfaI	GTAC	2 cut(s)	99, 975
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	4 cut(s)	37, 63, 322, 516
AjiI	CACGTC	2 cut(s)	469, 956
AjnI	CCWGG	2 cut(s)	361, 834
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 408, 440
AloI	GAACNNNNNNTCC	2 cut(s)	775, 807
AluBI	AGCT	2 cut(s)	109, 233
AluI	AGCT	2 cut(s)	109, 233
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	3 cut(s)	753, 767, 910
AlwI	GGATC	2 cut(s)	561, 623
AlwNI	CAGNNNCTG	1 cut(s)	804
Ama87I	CYCGRG	1 cut(s)	750
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	3 cut(s)	13, 49, 832
ApeKI	GCWGC	3 cut(s)	41, 601, 662
ApoI	RAATTY	3 cut(s)	32, 689, 922
AseI	ATTAAT	1 cut(s)	948
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	2 cut(s)	221, 381
AsuHPI	GGTGA	1 cut(s)	369
AvaI	CYCGRG	1 cut(s)	750
BalI	TGGCCA	1 cut(s)	51
BanII	GRGCYC	2 cut(s)	235, 490
BbrPI	CACGTG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	3 cut(s)	53, 588, 674
BccI	CCATC	2 cut(s)	129, 773
BceAI	ACGGC	1 cut(s)	614
BciT130I	CCWGG	2 cut(s)	363, 836
BcnI	CCSGG	2 cut(s)	221, 381
BcoDI	GTCTC	3 cut(s)	753, 767, 910
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	545
BisI	GCNGC	4 cut(s)	42, 312, 602, 663
BlsI	GCNGC	4 cut(s)	43, 313, 603, 664
Bme1390I	CCNGG	4 cut(s)	221, 363, 381, 836
BmeT110I	CYCGRG	1 cut(s)	750
BmgBI	CACGTC	2 cut(s)	469, 956
BmgT120I	GGNCC	1 cut(s)	14
BmrFI	CCNGG	4 cut(s)	221, 363, 381, 836
BmsI	GCATC	4 cut(s)	340, 582, 613, 649
BpiI	GAAGAC	1 cut(s)	729
BpmI	CTGGAG	2 cut(s)	276, 454
BpuMI	CCSGG	2 cut(s)	221, 381
BsaAI	YACGTR	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	26, 210, 361, 835
BsaWI	WCCGGW	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	3 cut(s)	56, 259, 437
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	363, 836
BseDI	CCNNGG	4 cut(s)	26, 210, 361, 835
BseGI	GGATG	2 cut(s)	121, 789
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	503, 669
BseNI	ACTGG	3 cut(s)	56, 259, 437
BseXI	GCAGC	3 cut(s)	53, 588, 674
BseYI	CCCAGC	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	854
BshFI	GGCC	3 cut(s)	15, 51, 834
BsiHKAI	GWGCWC	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	750
BsiSI	CCGG	3 cut(s)	125, 220, 381
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	3 cut(s)	753, 767, 910
BsmBI	CGTCTC	1 cut(s)	910
BsmI	GAATGC	3 cut(s)	575, 824, 964
BsnI	GGCC	3 cut(s)	15, 51, 834
BsoBI	CYCGRG	1 cut(s)	750
Bsp1286I	GDGCHC	2 cut(s)	235, 490
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	172, 553, 628
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	2 cut(s)	311, 616
BspANI	GGCC	3 cut(s)	15, 51, 834
BspCNI	CTCAG	2 cut(s)	502, 668
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	854
BspMAI	CTGCAG	1 cut(s)	549
BspPI	GGATC	2 cut(s)	561, 623
BsrI	ACTGG	3 cut(s)	56, 259, 437
BssECI	CCNNGG	4 cut(s)	26, 210, 361, 835
BssMI	GATC	3 cut(s)	172, 553, 628
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	363, 836
Bst4CI	ACNGT	2 cut(s)	410, 850
BstAPI	GCANNNNNTGC	1 cut(s)	570
BstBAI	YACGTR	1 cut(s)	47
BstDEI	CTNAG	4 cut(s)	326, 489, 560, 655
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	121, 789
BstFNI	CGCG	1 cut(s)	854
BstKTI	GATC	3 cut(s)	175, 556, 631
BstMAI	GTCTC	3 cut(s)	753, 767, 910
BstMBI	GATC	3 cut(s)	172, 553, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 239, 570, 821
BstNI	CCWGG	2 cut(s)	363, 836
BstSCI	CCNGG	4 cut(s)	219, 361, 379, 834
BstSFI	CTRYAG	1 cut(s)	545
BstUI	CGCG	1 cut(s)	854
BstV1I	GCAGC	3 cut(s)	53, 588, 674
BstV2I	GAAGAC	1 cut(s)	729
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	3 cut(s)	15, 51, 834
BtgI	CCRYGG	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	317
BtrI	CACGTC	2 cut(s)	469, 956
BtsCI	GGATG	2 cut(s)	121, 789
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	349, 864
CaiI	CAGNNNCTG	1 cut(s)	804
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	1 cut(s)	843
Csp6I	GTAC	2 cut(s)	98, 974
CviAII	CATG	5 cut(s)	27, 160, 608, 731, 940
CviQI	GTAC	2 cut(s)	98, 974
DdeI	CTNAG	4 cut(s)	326, 489, 560, 655
DpnI	GATC	3 cut(s)	174, 555, 630
DpnII	GATC	3 cut(s)	172, 553, 628
DrdI	GACNNNNNNGTC	2 cut(s)	674, 853
DseDI	GACNNNNNNGTC	2 cut(s)	674, 853
EaeI	YGGCCR	1 cut(s)	49
EciI	GGCGGA	1 cut(s)	631
Ecl136II	GAGCTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	26
Eco24I	GRGCYC	2 cut(s)	235, 490
Eco53kI	GAGCTC	1 cut(s)	233
Eco72I	CACGTG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	750
EcoICRI	GAGCTC	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	361, 834
EcoT14I	CCWWGG	1 cut(s)	26
EcoT22I	ATGCAT	2 cut(s)	165, 575
EcoT38I	GRGCYC	2 cut(s)	235, 490
ErhI	CCWWGG	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	910
FaeI	CATG	5 cut(s)	30, 163, 611, 734, 943
FatI	CATG	5 cut(s)	26, 159, 607, 730, 939
Fnu4HI	GCNGC	4 cut(s)	42, 312, 602, 663
FokI	GGATG	2 cut(s)	108, 796
FriOI	GRGCYC	2 cut(s)	235, 490
Fsp4HI	GCNGC	4 cut(s)	42, 312, 602, 663
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	4 cut(s)	42, 312, 602, 663
GsaI	CCCAGC	1 cut(s)	487
GsuI	CTGGAG	2 cut(s)	276, 454
HaeIII	GGCC	3 cut(s)	15, 51, 834
HapII	CCGG	3 cut(s)	125, 220, 381
HgaI	GACGC	1 cut(s)	843
Hin1II	CATG	5 cut(s)	30, 163, 611, 734, 943
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	2 cut(s)	742, 936
HpaII	CCGG	3 cut(s)	125, 220, 381
HphI	GGTGA	1 cut(s)	369
Hpy188I	TCNGA	3 cut(s)	658, 763, 876
Hpy188III	TCNNGA	8 cut(s)	125, 497, 577, 626, 719, 752, 844, 933
HpyAV	CCTTC	2 cut(s)	384, 522
HpyCH4III	ACNGT	2 cut(s)	410, 850
HpyCH4IV	ACGT	3 cut(s)	46, 468, 955
HpyCH4V	TGCA	6 cut(s)	163, 202, 547, 573, 604, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 239, 570, 821
HpyF3I	CTNAG	4 cut(s)	326, 489, 560, 655
HpySE526I	ACGT	3 cut(s)	46, 468, 955
Hsp92II	CATG	5 cut(s)	30, 163, 611, 734, 943
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	172, 553, 628
Lsp1109I	GCAGC	3 cut(s)	53, 588, 674
LweI	GCATC	4 cut(s)	340, 582, 613, 649
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	3 cut(s)	46, 468, 955
MaeIII	GTNAC	4 cut(s)	89, 134, 296, 706
MalI	GATC	3 cut(s)	174, 555, 630
MboI	GATC	3 cut(s)	172, 553, 628
MboII	GAAGA	3 cut(s)	167, 548, 734
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	2 cut(s)	235, 490
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	7 cut(s)	18, 32, 182, 451, 634, 689, 922
MluNI	TGGCCA	1 cut(s)	51
MmeI	TCCRAC	4 cut(s)	257, 406, 669, 854
MnlI	CCTC	7 cut(s)	5, 205, 450, 543, 606, 678, 887
Mox20I	TGGCCA	1 cut(s)	51
Mph1103I	ATGCAT	2 cut(s)	165, 575
MroI	TCCGGA	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	2 cut(s)	912, 948
MslI	CAYNNNNRTG	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	51
MspI	CCGG	3 cut(s)	125, 220, 381
MspR9I	CCNGG	4 cut(s)	221, 363, 381, 836
Mva1269I	GAATGC	3 cut(s)	575, 824, 964
MvaI	CCWGG	2 cut(s)	363, 836
MvnI	CGCG	1 cut(s)	854
MwoI	GCNNNNNNNGC	4 cut(s)	230, 239, 570, 821
NciI	CCSGG	2 cut(s)	221, 381
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	3 cut(s)	172, 553, 628
NlaIII	CATG	5 cut(s)	30, 163, 611, 734, 943
NmuCI	GTSAC	2 cut(s)	89, 134
NsiI	ATGCAT	2 cut(s)	165, 575
PctI	GAATGC	3 cut(s)	575, 824, 964
PfeI	GAWTC	2 cut(s)	742, 936
PflFI	GACNNNGTC	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	43, 313, 603, 664
PmaCI	CACGTG	1 cut(s)	47
PmlI	CACGTG	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	47
PshBI	ATTAAT	1 cut(s)	948
PsiI	TTATAA	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	361, 834
PspCI	CACGTG	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	483
PspGI	CCWGG	2 cut(s)	361, 834
PspPI	GGNCC	1 cut(s)	14
PsrI	GAACNNNNNNTAC	2 cut(s)	699, 731
PstI	CTGCAG	1 cut(s)	549
PstNI	CAGNNNCTG	1 cut(s)	804
PsuI	RGATCY	1 cut(s)	553
PsyI	GACNNNGTC	1 cut(s)	470
RsaI	GTAC	2 cut(s)	99, 975
RsaNI	GTAC	2 cut(s)	98, 974
RseI	CAYNNNNRTG	1 cut(s)	168
SacI	GAGCTC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	912, 948
SatI	GCNGC	4 cut(s)	42, 312, 602, 663
Sau3AI	GATC	3 cut(s)	172, 553, 628
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	4 cut(s)	221, 363, 381, 836
SduI	GDGCHC	2 cut(s)	235, 490
SfaNI	GCATC	4 cut(s)	340, 582, 613, 649
SfcI	CTRYAG	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	7 cut(s)	18, 32, 182, 451, 634, 689, 922
SsiI	CCGC	2 cut(s)	311, 616
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	1 cut(s)	719
SstI	GAGCTC	1 cut(s)	235
StyD4I	CCNGG	4 cut(s)	219, 361, 379, 834
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	410, 850
TaiI	ACGT	3 cut(s)	49, 471, 958
TaqI	TCGA	1 cut(s)	683
TasI	AATT	7 cut(s)	18, 32, 182, 451, 634, 689, 922
TatI	WGTACW	1 cut(s)	97
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	742, 936
Tru1I	TTAA	2 cut(s)	912, 948
Tru9I	TTAA	2 cut(s)	912, 948
TscAI	CASTG	2 cut(s)	349, 864
TseFI	GTSAC	2 cut(s)	89, 134
TseI	GCWGC	3 cut(s)	41, 601, 662
Tsp45I	GTSAC	2 cut(s)	89, 134
TspDTI	ATGAA	6 cut(s)	87, 101, 258, 603, 716, 928
TspRI	CASTG	2 cut(s)	349, 864
Tth111I	GACNNNGTC	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	948
XapI	RAATTY	3 cut(s)	32, 689, 922
XbaI	TCTAGA	1 cut(s)	718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XspI	CTAG	1 cut(s)	719
Zsp2I	ATGCAT	2 cut(s)	165, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.