Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004339

Physical Location & Seq

Genomic Coordinates Reverse (-)

87136107 .. 87136585

Gene Structure 479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG653600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGATCTTCGAGCATTGGCACCTATGTGGCTTTCGAAAACAGAAGAAGTACGTGCGAGAAGATAGAGCTCACTGGGCAACTAATATAACTGGTGACATTTATGGAAGCGGATGGATCAGTGAGATGTATGGATACTCTTTTGGTGCAGCAGAGGTTGGTCTTCGGCACAAAATAAATGATAACTTGATGATCTATCCAGGATATATTCCACAAGAGGGTGTTGTGCCTATTCTTCTTCACTATGGCTTGCCATTTAGCGTCGGAAATTGGTCCTTTAGTAAATTCGATCACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

11.45

Weight (kDa)

7.92

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01720
fragaria_vesca	FvH4_6g52410
malus_domestica	MD04G1153000.v1.1 MD08G1068600.v1.1 MD09G1018400.v1.1 MD16G1283700.v1.1 MD17G1018800.v1.1
prunus_persica	Prupe.3G298800_v2.0.a1
pyrus_communis	pycom111g01530 pycom15g31850 pycom17g01550 pycom17g01560
rosa_chinensis	RchiOBHm_Chr2g0174041 RchiOBHm_Chr2g0174051
rosa_laevigata	RLG00000022239 RLG00000022240
rosa_multiflora	Rmu_co8300129.1_g000001 Rmu_co8470913.1_g000001 Rmu_sc0037186.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078500 Rroxscaffold_2G00078510
rosa_rugosa	Rorug02G0574200
rosa_samantha	Rh2AG643300 Rh2AG653400 Rh2AG653600 Rh2BG664700 Rh2BG664900 Rh2CG629100 Rh2CG629200 Rh2DG679500 Rh2DG679600
rosa_wichuraiana	Rw2G053670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	18
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	196
AleI	CACNNNNGTG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	104, 281
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	198
BciVI	GTATCC	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	2 cut(s)	77, 94
BseBI	CCWGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseNI	ACTGG	2 cut(s)	77, 94
BseXI	GCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	3, 114, 189, 286
BspACI	CCGC	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	77, 94
BssMI	GATC	4 cut(s)	3, 114, 189, 286
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	116
BstKTI	GATC	4 cut(s)	6, 117, 192, 289
BstMBI	GATC	4 cut(s)	3, 114, 189, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	116
BtsIMutI	CAGTG	2 cut(s)	70, 124
Cac8I	GCNNGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	270
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	49
CviJI	RGCY	3 cut(s)	30, 68, 246
CviKI_1	RGCY	3 cut(s)	30, 68, 246
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	4 cut(s)	5, 116, 191, 288
DpnII	GATC	4 cut(s)	3, 114, 189, 286
Ecl136II	GAGCTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	70
FaiI	YATR	6 cut(s)	25, 86, 102, 129, 204, 243
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	123
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HgaI	GACGC	1 cut(s)	247
HphI	GGTGA	2 cut(s)	104, 281
Hpy188I	TCNGA	1 cut(s)	263
Hpy99I	CGWCG	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	3, 114, 189, 286
LpnPI	CCDG	4 cut(s)	58, 75, 183, 210
Lsp1109I	GCAGC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	4 cut(s)	5, 116, 191, 288
MboI	GATC	4 cut(s)	3, 114, 189, 286
MboII	GAAGA	5 cut(s)	55, 71, 152, 224, 227
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	265, 281
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	2 cut(s)	145, 208
MseI	TTAA	1 cut(s)	295
MslI	CAYNNNNRTG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	4 cut(s)	3, 114, 189, 286
NlaIV	GGNNCC	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	34
OliI	CACNNNNGTG	1 cut(s)	24
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	148
Ppu21I	YACGTR	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	270
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	295
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	4 cut(s)	3, 114, 189, 286
Sau96I	GGNCC	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	4 cut(s)	24, 54, 70, 156
SfuI	TTCGAA	1 cut(s)	34
SinI	GGWCC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	2 cut(s)	265, 281
SsiI	CCGC	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	3 cut(s)	9, 34, 285
TasI	AATT	2 cut(s)	265, 281
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TscAI	CASTG	2 cut(s)	77, 124
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	92
TspRI	CASTG	2 cut(s)	77, 124
VpaK11BI	GGWCC	1 cut(s)	270
XapI	RAATTY	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.