Rh2DG679600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004339
Physical Location & Seq
Reverse (-)
89963981 .. 89965413
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG679600.1

Sequence Viewer

Length: 780 bp
ATGCATGTCCTACTTGGGGTTAATGATTGGCAACGTGCTTATGGCACCATGTATTTGGTTGAATGCAATAACATTCTGCCCGATCAATTGCATACAAAGCATCCAGAACTTTGTGATATATACAAAGCATACAAAGCAATGCATATAGATGATGTATGTTCGAGCATTGGCACCTATGTGGCTTTCGAAAACAGAAGAAGTACGTGCGAGAGGATGGAGCTCACTGGGGAACTAATATATATAACTGGTGACATTTATGGAAGCGCGCGGATGGATCAGTTGGTCTTCGATCGGCACAAAATAAATGATAACTTGATGATCTATCCAGGATATATTCCACAAGAGGGTGTTGTGCCTATTCTTCTTCACTATGGCTTGCCATTTAGCGTCGGAAATTGGTCCTTTAGTAAATTCGATCACCGTCAAGATGGTATTGTTTATGACTGTGGCCGTCGCTTTCCTGAACCTCCTTATCCAAAAGAGATTAGACTGATGGAACCAGATGCACATAAAAGGTGGGGTATTTTTTTGAATCTAGAGTGCATTAGCACTTTGAATGAGGGACTTTTACTTCAACATGCAGCAAATCGTTGCCCTAAGCCAAGGTGGTCAAAATACATGAGCTTTATGGAAAGCAAAATTTTTTCTGAGCTGACTCAATCAAAACAGGTGAGTACTGCTGCCACTTTAGGTATTGAGGAGAAGGTACAGGCTGCACAGCAGCAGGCTATGATGAACCTGCGAAGCCATATGCAAAAATTCGCACATTATTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

30.1

Weight (kDa)

6.59

Isoelectric Point (pI)

62.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 747
AccB1I GGYRCC 2 cut(s) 44, 170
AccII CGCG 2 cut(s) 266, 268
AciI CCGC 1 cut(s) 268
AclWI GGATC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 3 cut(s) 410, 639, 758
AfaI GTAC 3 cut(s) 202, 676, 708
AfiI CCNNNNNNNGG 2 cut(s) 16, 344
AgsI TTSAA 4 cut(s) 62, 532, 556, 575
AjnI CCWGG 1 cut(s) 325
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 3 cut(s) 220, 624, 652
AluI AGCT 3 cut(s) 220, 624, 652
Alw21I GWGCWC 1 cut(s) 222
AlwI GGATC 1 cut(s) 282
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 4 cut(s) 581, 680, 713, 721
ApoI RAATTY 3 cut(s) 410, 639, 758
AspLEI GCGC 2 cut(s) 266, 268
AspS9I GGNCC 1 cut(s) 399
AsuHPI GGTGA 3 cut(s) 260, 410, 682
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 399
BanI GGYRCC 2 cut(s) 44, 170
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 4 cut(s) 593, 667, 700, 733
BccI CCATC 4 cut(s) 208, 265, 422, 487
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 327
BfaI CTAG 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 747
BisI GCNGC 4 cut(s) 582, 681, 714, 722
BlsI GCNGC 4 cut(s) 583, 682, 715, 723
BmcAI AGTACT 1 cut(s) 676
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 399
BmiI GGNNCC 3 cut(s) 46, 172, 498
BmrFI CCNGG 1 cut(s) 327
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 2 cut(s) 109, 493
BmuI ACTGGG 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 186
BsaAI YACGTR 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 602
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 344
Bse1I ACTGG 2 cut(s) 229, 250
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 602
BseGI GGATG 3 cut(s) 100, 219, 276
BseLI CCNNNNNNNGG 2 cut(s) 16, 344
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 639
BseNI ACTGG 2 cut(s) 229, 250
BsePI GCGCGC 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 713
BseXI GCAGC 4 cut(s) 593, 667, 700, 733
BsgI GTGCAG 1 cut(s) 699
Bsh1236I CGCG 2 cut(s) 266, 268
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 1 cut(s) 450
BshNI GGYRCC 2 cut(s) 44, 170
BsiEI CGRYCG 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 222
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 2 cut(s) 16, 344
BsmFI GGGAC 1 cut(s) 576
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 1 cut(s) 450
Bsp119I TTCGAA 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 5 cut(s) 82, 274, 289, 318, 415
BspACI CCGC 1 cut(s) 268
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 1 cut(s) 640
BspFNI CGCG 2 cut(s) 266, 268
BspLI GGNNCC 3 cut(s) 46, 172, 498
BspMI ACCTGC 1 cut(s) 747
BspPI GGATC 1 cut(s) 282
BspT104I TTCGAA 1 cut(s) 186
BspT107I GGYRCC 2 cut(s) 44, 170
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 2 cut(s) 229, 250
BssECI CCNNGG 1 cut(s) 602
BssHII GCGCGC 1 cut(s) 264
BssMI GATC 5 cut(s) 82, 274, 289, 318, 415
BssT1I CCWWGG 1 cut(s) 602
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 422, 446
BstBAI YACGTR 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 266, 377, 726
BstDEI CTNAG 2 cut(s) 597, 648
BstF5I GGATG 3 cut(s) 100, 219, 276
BstFNI CGCG 2 cut(s) 266, 268
BstHHI GCGC 2 cut(s) 266, 268
BstKTI GATC 5 cut(s) 85, 277, 292, 321, 418
BstMBI GATC 5 cut(s) 82, 274, 289, 318, 415
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 2 cut(s) 97, 134
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 2 cut(s) 8, 581
BstSCI CCNGG 1 cut(s) 325
BstUI CGCG 2 cut(s) 266, 268
BstV1I GCAGC 4 cut(s) 593, 667, 700, 733
BstV2I GAAGAC 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuRI GGCC 1 cut(s) 450
BtsCI GGATG 3 cut(s) 100, 219, 276
BtsIMutI CAGTG 1 cut(s) 222
BveI ACCTGC 1 cut(s) 747
Cac8I GCNNGC 3 cut(s) 266, 377, 726
CfoI GCGC 2 cut(s) 266, 268
Cfr13I GGNCC 1 cut(s) 399
CseI GACGC 1 cut(s) 376
Csp6I GTAC 3 cut(s) 201, 675, 707
CviAII CATG 4 cut(s) 5, 49, 578, 619
CviQI GTAC 3 cut(s) 201, 675, 707
DdeI CTNAG 2 cut(s) 597, 648
DpnI GATC 5 cut(s) 84, 276, 291, 320, 417
DpnII GATC 5 cut(s) 82, 274, 289, 318, 415
EaeI YGGCCR 1 cut(s) 448
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 602
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 399
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 602
EcoT22I ATGCAT 2 cut(s) 6, 144
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 602
FaeI CATG 4 cut(s) 8, 52, 581, 622
FaqI GGGAC 1 cut(s) 576
FatI CATG 4 cut(s) 4, 48, 577, 618
FauNDI CATATG 1 cut(s) 750
Fnu4HI GCNGC 4 cut(s) 582, 681, 714, 722
FokI GGATG 3 cut(s) 87, 226, 283
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 4 cut(s) 582, 681, 714, 722
FspBI CTAG 1 cut(s) 536
GlaI GCGC 2 cut(s) 265, 267
GluI GCNGC 4 cut(s) 582, 681, 714, 722
HaeIII GGCC 1 cut(s) 450
HgaI GACGC 1 cut(s) 376
HhaI GCGC 2 cut(s) 266, 268
Hin1II CATG 4 cut(s) 8, 52, 581, 622
Hin6I GCGC 2 cut(s) 264, 266
HinP1I GCGC 2 cut(s) 264, 266
HinfI GANTC 2 cut(s) 532, 655
HphI GGTGA 3 cut(s) 260, 410, 682
Hpy188I TCNGA 2 cut(s) 392, 649
Hpy188III TCNNGA 4 cut(s) 104, 425, 461, 536
Hpy99I CGWCG 2 cut(s) 392, 456
HpyAV CCTTC 1 cut(s) 697
HpyCH4III ACNGT 2 cut(s) 422, 446
HpyCH4IV ACGT 2 cut(s) 34, 203
HpyCH4V TGCA 9 cut(s) 4, 66, 91, 142, 506, 543, 581, 716, 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 134
HpyF3I CTNAG 2 cut(s) 597, 648
HpySE526I ACGT 2 cut(s) 34, 203
Hsp92II CATG 4 cut(s) 8, 52, 581, 622
HspAI GCGC 2 cut(s) 264, 266
Kzo9I GATC 5 cut(s) 82, 274, 289, 318, 415
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 4 cut(s) 593, 667, 700, 733
LweI GCATC 2 cut(s) 109, 493
MaeI CTAG 1 cut(s) 536
MaeII ACGT 2 cut(s) 34, 203
MaeIII GTNAC 1 cut(s) 248
MalI GATC 5 cut(s) 84, 276, 291, 320, 417
MboI GATC 5 cut(s) 82, 274, 289, 318, 415
MboII GAAGA 4 cut(s) 207, 277, 353, 356
MfeI CAATTG 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 5 cut(s) 86, 394, 410, 639, 758
MlyI GAGTC 1 cut(s) 649
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 5 cut(s) 204, 337, 477, 553, 691
Mph1103I ATGCAT 2 cut(s) 6, 144
MseI TTAA 2 cut(s) 21, 778
MslI CAYNNNNRTG 2 cut(s) 147, 176
MspR9I CCNGG 1 cut(s) 327
MunI CAATTG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 68
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 2 cut(s) 266, 268
MwoI GCNNNNNNNGC 2 cut(s) 97, 134
NdeI CATATG 1 cut(s) 750
NdeII GATC 5 cut(s) 82, 274, 289, 318, 415
NlaIII CATG 4 cut(s) 8, 52, 581, 622
NlaIV GGNNCC 3 cut(s) 46, 172, 498
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 2 cut(s) 6, 144
NspI RCATGY 2 cut(s) 8, 581
NspV TTCGAA 1 cut(s) 186
OliI CACNNNNGTG 1 cut(s) 176
PauI GCGCGC 1 cut(s) 264
PctI GAATGC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 532
PfoI TCCNGGA 1 cut(s) 325
PkrI GCNGC 4 cut(s) 583, 682, 715, 723
Ple19I CGATCG 1 cut(s) 292
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
Ppu21I YACGTR 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 3 cut(s) 46, 172, 498
PspPI GGNCC 1 cut(s) 399
PteI GCGCGC 1 cut(s) 264
PvuI CGATCG 1 cut(s) 292
RsaI GTAC 3 cut(s) 202, 676, 708
RsaNI GTAC 3 cut(s) 201, 675, 707
RseI CAYNNNNRTG 2 cut(s) 147, 176
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 21, 778
SatI GCNGC 4 cut(s) 582, 681, 714, 722
Sau3AI GATC 5 cut(s) 82, 274, 289, 318, 415
Sau96I GGNCC 1 cut(s) 399
ScaI AGTACT 1 cut(s) 676
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 2 cut(s) 109, 493
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 1 cut(s) 399
SmiMI CAYNNNNRTG 2 cut(s) 147, 176
Sse9I AATT 5 cut(s) 86, 394, 410, 639, 758
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 536
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 2 cut(s) 422, 446
TaiI ACGT 2 cut(s) 37, 206
TaqI TCGA 4 cut(s) 161, 186, 288, 414
TasI AATT 5 cut(s) 86, 394, 410, 639, 758
TatI WGTACW 1 cut(s) 674
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 2 cut(s) 21, 778
Tru9I TTAA 2 cut(s) 21, 778
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 4 cut(s) 581, 680, 713, 721
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 749
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 399
XapI RAATTY 3 cut(s) 410, 639, 758
XbaI TCTAGA 1 cut(s) 535
XceI RCATGY 2 cut(s) 8, 581
XspI CTAG 1 cut(s) 536
ZrmI AGTACT 1 cut(s) 676
Zsp2I ATGCAT 2 cut(s) 6, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.