Rh2AG643300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004339
Physical Location & Seq
Forward (+)
86543880 .. 86544844
965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG643300.1

Sequence Viewer

Length: 312 bp
ATGCATTTGGCTCCAACTTTTGAGGTGCCTTCTATGAGTAGGCACCCTAAGACTGGTGACTGGTACCCTGCCATTAACAAACCTGCTGGAGTTGTGCACTGGCTTAAGCATGGTAAAGAAGCTAAGAATGTTGATTGGGTTGTCATACTGGATACAGACATGATCATACGGGGGCCTATTGTTCCTTGGGAACTTGGTGCCGAGAAAGGCTATGCTGTGGCAGCATATTATGGGTATTTACTTACTTTTCCTTTACTCAATCATACAACGCTAAAGCTGAGCAACCAAGTTCGACATAAAAGACAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.74

Weight (kDa)

9.48

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 91
Acc65I GGTACC 1 cut(s) 63
AccB1I GGYRCC 4 cut(s) 25, 42, 63, 197
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 53
AflII CTTAAG 1 cut(s) 104
AluBI AGCT 2 cut(s) 122, 277
AluI AGCT 2 cut(s) 122, 277
Alw21I GWGCWC 1 cut(s) 99
Alw44I GTGCAC 1 cut(s) 95
AoxI GGCC 1 cut(s) 173
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 221
Asp718I GGTACC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 99
BanI GGYRCC 4 cut(s) 25, 42, 63, 197
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 233
BciVI GTATCC 1 cut(s) 145
BclI TGATCA 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 104
BfuAI ACCTGC 1 cut(s) 91
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 1 cut(s) 222
BlpI GCTNAGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 6 cut(s) 12, 27, 44, 65, 174, 199
BpmI CTGGAG 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 4 cut(s) 58, 65, 104, 153
BseDI CCNNGG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 4 cut(s) 58, 65, 104, 153
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 1 cut(s) 233
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 4 cut(s) 25, 42, 63, 197
BsiHKAI GWGCWC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 53
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 162
Bsp1720I GCTNAGC 1 cut(s) 278
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 270
BspLI GGNNCC 6 cut(s) 12, 27, 44, 65, 174, 199
BspMI ACCTGC 1 cut(s) 91
BspT107I GGYRCC 4 cut(s) 25, 42, 63, 197
BspTI CTTAAG 1 cut(s) 104
BsrI ACTGG 4 cut(s) 58, 65, 104, 153
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 185
BstAFI CTTAAG 1 cut(s) 104
BstDEI CTNAG 3 cut(s) 48, 123, 278
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 233
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 97
BveI ACCTGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 64
CviAII CATG 2 cut(s) 110, 160
CviJI RGCY 6 cut(s) 11, 103, 122, 175, 210, 277
CviKI_1 RGCY 6 cut(s) 11, 103, 122, 175, 210, 277
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 3 cut(s) 48, 123, 278
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 2 cut(s) 113, 163
FatI CATG 2 cut(s) 109, 159
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 222
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 175
Hin1II CATG 2 cut(s) 113, 163
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 4, 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 3 cut(s) 48, 123, 278
Hsp92II CATG 2 cut(s) 113, 163
KpnI GGTACC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 7 cut(s) 39, 46, 72, 81, 85, 96, 134
Lsp1109I GCAGC 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 1 cut(s) 16
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 75, 105
MspCI CTTAAG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 1 cut(s) 162
NlaIII CATG 2 cut(s) 113, 163
NlaIV GGNNCC 6 cut(s) 12, 27, 44, 65, 174, 199
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 1 cut(s) 223
PspN4I GGNNCC 6 cut(s) 12, 27, 44, 65, 174, 199
PspPI GGNCC 1 cut(s) 173
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 2 cut(s) 75, 105
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 99
SetI ASST 4 cut(s) 27, 85, 124, 279
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 305
StyI CCWWGG 1 cut(s) 185
TaqI TCGA 1 cut(s) 292
TasI AATT 1 cut(s) 305
Tru1I TTAA 2 cut(s) 75, 105
Tru9I TTAA 2 cut(s) 75, 105
TscAI CASTG 1 cut(s) 104
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 56
TspRI CASTG 1 cut(s) 104
Vha464I CTTAAG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.