Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Forward (+)

30771369 .. 30771801

Gene Structure 433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1208100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCATGACAAAAATGTCGTGTCTTGGACTGGTATGATTTATGGGTATGTTAAAGGTGGGTGTTATGATGATGGTTTGATGATGTTACTGGGTATGCGTCAAGCGGGTCTTAGGGCTAATCAGTTTGGGAATGGGAGTGCGTTGAGGGCGTGTACGGGATTGAGATGTTTTGAAAACGCGTTGGTTGATTTTCATTCTAAGTGTGGGAAAATAGAGGATGCCTGTTGTTTGTTTGAGGAAATGTCAGTGAGAGACTTGGTTTTGTGGAATGCTATGATTGGCGACTATGCTGTTCAGGGTTTTGCTAATGACTCATTGCATATGTTCCATTCAATGATGAAGAAGGTGAATGTTTATAATTGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

123

Amino Acids

13.6

Weight (kDa)

6.38

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
AasI	GACNNNNNNGTC	1 cut(s)	14
AccII	CGCG	1 cut(s)	179
AciI	CCGC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	173, 333
Alw26I	GTCTC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	358
BccI	CCATC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	246
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	34, 93
Bse3DI	GCAATG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	314
BseNI	ACTGG	2 cut(s)	34, 93
Bsh1236I	CGCG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	34, 93
BstDEI	CTNAG	2 cut(s)	110, 198
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	179
BstMAI	GTCTC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstUI	CGCG	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	252
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	2 cut(s)	116, 366
CviKI_1	RGCY	2 cut(s)	116, 366
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	2 cut(s)	110, 198
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	8
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FatI	CATG	1 cut(s)	4
FauI	CCCGC	1 cut(s)	97
FauNDI	CATATG	1 cut(s)	321
FokI	GGATG	1 cut(s)	230
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	8
HinfI	GANTC	1 cut(s)	311
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	153
HpyAV	CCTTC	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	4, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	110, 198
Hsp92II	CATG	1 cut(s)	8
LpnPI	CCDG	4 cut(s)	15, 74, 235, 281
LweI	GCATC	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	352
MluCI	AATT	1 cut(s)	358
MluI	ACGCGT	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	3 cut(s)	138, 208, 229
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	274
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeI	CATATG	1 cut(s)	321
NlaIII	CATG	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PsiI	TTATAA	1 cut(s)	357
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	51
SchI	GAGTC	1 cut(s)	305
SetI	ASST	2 cut(s)	58, 348
SfaNI	GCATC	1 cut(s)	208
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	104
TasI	AATT	1 cut(s)	358
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	252
TspDTI	ATGAA	2 cut(s)	182, 353
TspRI	CASTG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.