Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8198802.1

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 709

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8198802.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 605 bp

atgcagatacaggggtgtcttgtgaaaggaaggtttgctgagaatttgtttgtgctgagtgcattagttgattttcatgccaagtgtggaaagatagaggatgcttgttgtgttttcgaggcaatgtcggaaagggacttggtttcttggaatgcaatcattggagggtatgctgttcagggttttagtgacgactcgttgcgaatgtttcggtcaatgatgagggaaggcatggttcctgattgcttcaccttcgggagtgttttgagaggcttggccggagatgttggtttggtgaaggttagtcaaatgcatggattgataatgcatctgggttttggatcacacaaaagtttgagtggatcgctaatcaatgcatatgcaaaatgtgggaaggtagagtttgcccataagatatacagaagtatgatagaaaaggacattatatcttgcactgcactaattactgggtatgcacgagaaggtaactacagcggagatgtgctagatctcttcaaggagataactgttatgagcatgagactggatggtgtcatattgtgctccatgcttaatatatgtgcaaatgttgcttcattgatctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

201

Amino Acids

21.96

Weight (kDa)

6.5

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	2 cut(s)	349, 370
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	517
Alw21I	GWGCWC	1 cut(s)	566
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	2 cut(s)	349, 370
AoxI	GGCC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	241, 307
BaeI	ACNNNNGTAYC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	566
BccI	CCATC	1 cut(s)	542
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	490
BglII	AGATCT	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	2 cut(s)	91, 337
BmuI	ACTGGG	1 cut(s)	477
Bse1I	ACTGG	2 cut(s)	472, 549
Bse3DI	GCAATG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	106, 553
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	30, 47
BseNI	ACTGG	2 cut(s)	472, 549
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	566
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp143I	GATC	4 cut(s)	341, 362, 508, 600
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	31, 48
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	349, 370
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	472, 549
BssMI	GATC	4 cut(s)	341, 362, 508, 600
BssSI	CACGAG	1 cut(s)	477
Bst2BI	CACGAG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	529
Bst6I	CTCTTC	1 cut(s)	518
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstDEI	CTNAG	2 cut(s)	39, 56
BstF5I	GGATG	2 cut(s)	106, 553
BstKTI	GATC	4 cut(s)	344, 365, 511, 603
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	4 cut(s)	341, 362, 508, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstSFI	CTRYAG	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	106, 553
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	1 cut(s)	453
CviAII	CATG	5 cut(s)	77, 232, 314, 538, 568
CviJI	RGCY	2 cut(s)	273, 278
CviKI_1	RGCY	2 cut(s)	273, 278
DdeI	CTNAG	2 cut(s)	39, 56
DpnI	GATC	4 cut(s)	343, 364, 510, 602
DpnII	GATC	4 cut(s)	341, 362, 508, 600
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
EcoT22I	ATGCAT	3 cut(s)	315, 330, 379
FaeI	CATG	5 cut(s)	80, 235, 317, 541, 571
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	5 cut(s)	76, 231, 313, 537, 567
FauNDI	CATATG	1 cut(s)	379
FokI	GGATG	2 cut(s)	113, 560
FspBI	CTAG	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	279
Hin1II	CATG	5 cut(s)	80, 235, 317, 541, 571
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	241, 307
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	239, 256
HpyAV	CCTTC	6 cut(s)	24, 221, 262, 292, 388, 476
HpyCH4III	ACNGT	1 cut(s)	529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	2 cut(s)	39, 56
Hsp92II	CATG	5 cut(s)	80, 235, 317, 541, 571
Kzo9I	GATC	4 cut(s)	341, 362, 508, 600
LmnI	GCTCC	1 cut(s)	569
LpnPI	CCDG	6 cut(s)	164, 252, 292, 317, 453, 530
LweI	GCATC	2 cut(s)	91, 337
MaeI	CTAG	1 cut(s)	506
MaeIII	GTNAC	2 cut(s)	188, 485
MalI	GATC	4 cut(s)	343, 364, 510, 602
MboI	GATC	4 cut(s)	341, 362, 508, 600
MboII	GAAGA	1 cut(s)	505
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	2 cut(s)	43, 462
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	91, 112, 158, 216, 263
Mph1103I	ATGCAT	3 cut(s)	315, 330, 379
MseI	TTAA	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	495
MspI	CCGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	590
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	4 cut(s)	341, 362, 508, 600
NlaIII	CATG	5 cut(s)	80, 235, 317, 541, 571
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	188
NsiI	ATGCAT	3 cut(s)	315, 330, 379
PctI	GAATGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	508
SaqAI	TTAA	1 cut(s)	573
Sau3AI	GATC	4 cut(s)	341, 362, 508, 600
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	566
SetI	ASST	5 cut(s)	35, 254, 303, 399, 487
SfaNI	GCATC	2 cut(s)	91, 337
SfcI	CTRYAG	1 cut(s)	490
Sse9I	AATT	2 cut(s)	43, 462
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	1 cut(s)	506
TaaI	ACNGT	1 cut(s)	529
TaqI	TCGA	1 cut(s)	117
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	2 cut(s)	43, 462
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	65, 585
TspRI	CASTG	1 cut(s)	460
XapI	RAATTY	1 cut(s)	43
XspI	CTAG	1 cut(s)	506
Zsp2I	ATGCAT	3 cut(s)	315, 330, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.