Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009744.1

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Forward (+)

28181 .. 28552

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009744.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgatgtcacacataatgcaagcattgtggaaaaggagtcaccttcaagaagctccgagacttgttcagtctaacccaactcacttggaccattactattgcttgtatatgaagattctgcaactctgcatcgatcaacgagtagaaagacccggtcttttggctcacacccatgtgatcacaaatgggtttgcttcaaatctgaatttgaacaccaaattgatcaacttttactgcaaatttggccgcgtggttggtgctcgcaaggtgttcgataaaatgcctgagagaaatgttgtgtcttggacctctatggtttctgggtatgctcaaagtggaagctatgagaaagctttggacaagaaactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

123

Amino Acids

14.23

Weight (kDa)

9.64

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	249
AciI	CCGC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	2 cut(s)	205, 239
AgsI	TTSAA	3 cut(s)	47, 198, 211
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	3 cut(s)	53, 342, 353
AluI	AGCT	3 cut(s)	53, 342, 353
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	244
ApoI	RAATTY	2 cut(s)	205, 239
AspS9I	GGNCC	2 cut(s)	88, 306
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	88, 306
Bbv12I	GWGCWC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BclI	TGATCA	2 cut(s)	177, 222
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	52
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	2 cut(s)	88, 306
BmgT120I	GGNCC	2 cut(s)	88, 306
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	132
BseCI	ATCGAT	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	133, 177, 222
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	249
BssMI	GATC	3 cut(s)	133, 177, 222
BstC8I	GCNNGC	2 cut(s)	21, 262
BstDEI	CTNAG	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	3 cut(s)	136, 180, 225
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	3 cut(s)	133, 177, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	151
BstUI	CGCG	1 cut(s)	249
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	246
BsuTUI	ATCGAT	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	21, 262
Cfr13I	GGNCC	2 cut(s)	88, 306
ClaI	ATCGAT	1 cut(s)	132
CspCI	CAANNNNNGTGG	2 cut(s)	8, 43
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	5 cut(s)	53, 164, 246, 342, 353
CviKI_1	RGCY	5 cut(s)	53, 164, 246, 342, 353
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	135, 179, 224
DpnII	GATC	3 cut(s)	133, 177, 222
EaeI	YGGCCR	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	88, 306
FaeI	CATG	1 cut(s)	176
FaiI	YATR	7 cut(s)	14, 108, 110, 174, 314, 327, 345
FatI	CATG	1 cut(s)	172
FbaI	TGATCA	2 cut(s)	177, 222
Fnu4HI	GCNGC	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	2 cut(s)	37, 115
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	57, 204
Hpy188III	TCNNGA	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	19, 121, 129, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	176
Ksp22I	TGATCA	2 cut(s)	177, 222
Kzo9I	GATC	3 cut(s)	133, 177, 222
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	166, 297, 306
LweI	GCATC	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	6, 38
MalI	GATC	3 cut(s)	135, 179, 224
MboI	GATC	3 cut(s)	133, 177, 222
MboII	GAAGA	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	3 cut(s)	205, 218, 239
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	319
MslI	CAYNNNNRTG	2 cut(s)	171, 173
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	243
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	133, 177, 222
NlaIII	CATG	1 cut(s)	176
NmuCI	GTSAC	2 cut(s)	6, 38
OliI	CACNNNNGTG	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	115
PflFI	GACNNNGTC	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	248
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	88, 306
PsyI	GACNNNGTC	1 cut(s)	153
RseI	CAYNNNNRTG	2 cut(s)	171, 173
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	3 cut(s)	133, 177, 222
Sau96I	GGNCC	2 cut(s)	88, 306
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	6 cut(s)	45, 55, 270, 311, 344, 355
SfaNI	GCATC	1 cut(s)	138
SinI	GGWCC	2 cut(s)	88, 306
SmiMI	CAYNNNNRTG	2 cut(s)	171, 173
Sse9I	AATT	3 cut(s)	205, 218, 239
SsiI	CCGC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	151
TaqI	TCGA	2 cut(s)	132, 273
TasI	AATT	3 cut(s)	205, 218, 239
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	115
TseFI	GTSAC	2 cut(s)	6, 38
Tsp45I	GTSAC	2 cut(s)	6, 38
TspDTI	ATGAA	1 cut(s)	125
Tth111I	GACNNNGTC	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	88, 306
XapI	RAATTY	2 cut(s)	205, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.