Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Reverse (-)

19698082 .. 19699173

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG176500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGTTCCTGATTGCTTCACCTTCGGGAGTGTTTTGAGAGGCTTGGCCGGAGATAGTGGTTTGGTGAAGGTTAGTCAAATGCATGGATTGATAATGCATCTGGGTTTTGGATCACACAAAAGTTTGAGTGGATCGCTAATCAATGCATATGCAAAATGTGGGAAGGTAGAGTTTGCCCATAAGATATACAGAAGTATGATAGAAAAGGACATTATATCTTGCACTGCACTAATTACTGGGTATGCACGAGAAGGTAACTACAGCAGAGATGTGCTAGATCTCTTCAGGGAGATAACTGTTATGAGCATGAGACTGGATGGTGTCATATTGTGCTCCATGCTTAATATATGTGCAAATGTTGCTTCATTGATCTTGGGAAGACAAATCCATGCACTTATGTTGAAACACCAACCTTATCTTGATGTGGCCATGGGAAATGCTCTAGTTGATATGTATGCAAAATGTGGAGAGATTGAAGATGCTAACCATGCTTTTGAGGAGATGGAGGAAAAGAATGTAATTTCATGGACGTCTCTGATTTCTGGATATGGAAGGAACGGCCATGGAGCTAAAGCAATTGCATTGTATAAAAGGATGGAACTTGAGGGATTGAAACCTAATGATATCACATTCTTATCTCTTCTCTTTGCTTGTAGCCATACTGGATTGACAAGTGAAGGATGGGAATGCTTCAATACTATGCTTAGCAAATACAACATCTTGCCTAGGGCTGAGCATTTTTCTTGCTTAGTAGATCTTTATGCACGTGCAGGTTTGCTGGAAGATGTGCATGAGTTGATATGTGACATGAACATTAAGCCTGATCCCTCACTTTGGGGAGCTGTTCTTGGGGGATGTAGCACCTATGGTAATAAGTCACTTGGAGAAGTGGCATCAATGCATCTTTGTGATATTGATCCTGAGAATTCAGTTAACTATGTTGTTCTTGGAAGCATCTATGCTGCATCTGGTGCATGGGACAATGCTTTGGAAACACGAGATTTGTTAGAGAAGAGAAGTTTGAAAAAAGAACCAGCGCACAGCCTTATACATTCCAGAACAAATAATATGTTGCTTTTGCAGCCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

363

Amino Acids

39.97

Weight (kDa)

5.95

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	171 - 219	1.1e-11	PPR repeat family
PPR	PF01535	174 - 204	2.7e-07	PPR repeat
E_motif	PF20431	289 - 350	5.2e-09	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	761
AclWI	GGATC	4 cut(s)	118, 139, 818, 911
AcoI	YGGCCR	3 cut(s)	45, 426, 559
AcsI	RAATTY	1 cut(s)	925
AcuI	CTGAAG	1 cut(s)	268
AcvI	CACGTG	1 cut(s)	767
AcyI	GRCGYC	1 cut(s)	530
AfiI	CCNNNNNNNGG	1 cut(s)	834
AgsI	TTSAA	5 cut(s)	403, 476, 613, 694, 1024
AluBI	AGCT	2 cut(s)	569, 842
AluI	AGCT	2 cut(s)	569, 842
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	2 cut(s)	304, 537
AlwI	GGATC	4 cut(s)	118, 139, 818, 911
AoxI	GGCC	3 cut(s)	45, 426, 559
ApeKI	GCWGC	2 cut(s)	962, 1081
ApoI	RAATTY	1 cut(s)	925
AspA2I	CCTAGG	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	1039
AsuHPI	GGTGA	2 cut(s)	10, 76
AvrII	CCTAGG	1 cut(s)	725
BalI	TGGCCA	1 cut(s)	428
BauI	CACGAG	2 cut(s)	246, 996
BbrPI	CACGTG	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	949
BccI	CCATC	4 cut(s)	311, 496, 589, 675
BceAI	ACGGC	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	304, 537
BfaI	CTAG	3 cut(s)	275, 443, 726
BfmI	CTRYAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	761
BglII	AGATCT	2 cut(s)	277, 754
BisI	GCNGC	2 cut(s)	963, 1082
BlnI	CCTAGG	1 cut(s)	725
BlpI	GCTNAGC	2 cut(s)	704, 732
BlsI	GCNGC	2 cut(s)	964, 1083
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	6 cut(s)	106, 469, 902, 910, 963, 974
BmuI	ACTGGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	385
Bpu1102I	GCTNAGC	2 cut(s)	704, 732
BpuEI	CTTGAG	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	915
BsaHI	GRCGYC	1 cut(s)	530
BsaJI	CCNNGG	3 cut(s)	429, 562, 725
Bsc4I	CCNNNNNNNGG	1 cut(s)	834
Bse1I	ACTGG	3 cut(s)	241, 318, 667
Bse8I	GATNNNNATC	1 cut(s)	915
BseDI	CCNNGG	3 cut(s)	429, 562, 725
BseGI	GGATG	4 cut(s)	322, 600, 686, 860
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	1 cut(s)	834
BseMII	CTCAG	2 cut(s)	723, 912
BseNI	ACTGG	3 cut(s)	241, 318, 667
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	1 cut(s)	949
BsgI	GTGCAG	2 cut(s)	210, 789
BshFI	GGCC	3 cut(s)	47, 428, 561
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	992
BslI	CCNNNNNNNGG	1 cut(s)	834
BsmAI	GTCTC	2 cut(s)	304, 537
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	992
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	3 cut(s)	47, 428, 561
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	7 cut(s)	110, 131, 277, 369, 754, 823, 916
Bsp1720I	GCTNAGC	2 cut(s)	704, 732
Bsp19I	CCATGG	2 cut(s)	429, 562
BspANI	GGCC	3 cut(s)	47, 428, 561
BspCNI	CTCAG	2 cut(s)	724, 913
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	761
BspPI	GGATC	4 cut(s)	118, 139, 818, 911
BsrI	ACTGG	3 cut(s)	241, 318, 667
BssECI	CCNNGG	3 cut(s)	429, 562, 725
BssMI	GATC	7 cut(s)	110, 131, 277, 369, 754, 823, 916
BssNI	GRCGYC	1 cut(s)	530
BssSI	CACGAG	2 cut(s)	246, 996
BssT1I	CCWWGG	3 cut(s)	429, 562, 725
Bst2BI	CACGAG	2 cut(s)	246, 996
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	3 cut(s)	287, 645, 1007
BstACI	GRCGYC	1 cut(s)	530
BstAPI	GCANNNNNTGC	2 cut(s)	359, 971
BstBAI	YACGTR	1 cut(s)	767
BstDEI	CTNAG	4 cut(s)	704, 732, 748, 921
BstDSI	CCRYGG	2 cut(s)	429, 562
BstF5I	GGATG	4 cut(s)	322, 600, 686, 860
BstHHI	GCGC	1 cut(s)	1039
BstKTI	GATC	7 cut(s)	113, 134, 280, 372, 757, 826, 919
BstMAI	GTCTC	2 cut(s)	304, 537
BstMBI	GATC	7 cut(s)	110, 131, 277, 369, 754, 823, 916
BstMWI	GCNNNNNNNGC	4 cut(s)	359, 488, 971, 1081
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	949
BstV2I	GAAGAC	1 cut(s)	385
BstX2I	RGATCY	2 cut(s)	277, 754
BstYI	RGATCY	2 cut(s)	277, 754
BsuRI	GGCC	3 cut(s)	47, 428, 561
BtgI	CCRYGG	2 cut(s)	429, 562
BtsCI	GGATG	4 cut(s)	322, 600, 686, 860
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	761
CfoI	GCGC	1 cut(s)	1039
DdeI	CTNAG	4 cut(s)	704, 732, 748, 921
DpnI	GATC	7 cut(s)	112, 133, 279, 371, 756, 825, 918
DpnII	GATC	7 cut(s)	110, 131, 277, 369, 754, 823, 916
EaeI	YGGCCR	3 cut(s)	45, 426, 559
Eam1104I	CTCTTC	3 cut(s)	287, 645, 1007
EarI	CTCTTC	3 cut(s)	287, 645, 1007
Eco130I	CCWWGG	3 cut(s)	429, 562, 725
Eco32I	GATATC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	268
Eco72I	CACGTG	1 cut(s)	767
EcoRI	GAATTC	1 cut(s)	925
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	3 cut(s)	429, 562, 725
EcoT22I	ATGCAT	4 cut(s)	84, 99, 148, 903
ErhI	CCWWGG	3 cut(s)	429, 562, 725
Esp3I	CGTCTC	1 cut(s)	537
FaqI	GGGAC	1 cut(s)	992
FauNDI	CATATG	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	963, 1082
FokI	GGATG	4 cut(s)	329, 607, 693, 867
Fsp4HI	GCNGC	2 cut(s)	963, 1082
FspBI	CTAG	3 cut(s)	275, 443, 726
GlaI	GCGC	1 cut(s)	1038
GluI	GCNGC	2 cut(s)	963, 1082
HaeIII	GGCC	3 cut(s)	47, 428, 561
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	1039
Hin1I	GRCGYC	1 cut(s)	530
Hin6I	GCGC	1 cut(s)	1037
HinP1I	GCGC	1 cut(s)	1037
HincII	GTYRAC	1 cut(s)	934
HindII	GTYRAC	1 cut(s)	934
HpaI	GTTAAC	1 cut(s)	934
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	2 cut(s)	10, 76
Hpy166II	GTNNAC	1 cut(s)	934
Hpy188I	TCNGA	1 cut(s)	537
Hpy188III	TCNNGA	6 cut(s)	8, 25, 419, 543, 920, 1056
Hpy8I	GTNNAC	1 cut(s)	934
HpyAV	CCTTC	6 cut(s)	31, 61, 157, 245, 546, 671
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	2 cut(s)	530, 766
HpyF10VI	GCNNNNNNNGC	4 cut(s)	359, 488, 971, 1081
HpyF3I	CTNAG	4 cut(s)	704, 732, 748, 921
HpySE526I	ACGT	2 cut(s)	530, 766
Hsp92I	GRCGYC	1 cut(s)	530
HspAI	GCGC	1 cut(s)	1037
KspAI	GTTAAC	1 cut(s)	934
Kzo9I	GATC	7 cut(s)	110, 131, 277, 369, 754, 823, 916
LmnI	GCTCC	3 cut(s)	338, 566, 839
Lsp1109I	GCAGC	1 cut(s)	949
LweI	GCATC	6 cut(s)	106, 469, 902, 910, 963, 974
MaeI	CTAG	3 cut(s)	275, 443, 726
MaeII	ACGT	2 cut(s)	530, 766
MaeIII	GTNAC	3 cut(s)	254, 803, 876
MalI	GATC	7 cut(s)	112, 133, 279, 371, 756, 825, 918
MboI	GATC	7 cut(s)	110, 131, 277, 369, 754, 823, 916
MboII	GAAGA	6 cut(s)	274, 390, 488, 632, 794, 1024
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	2 cut(s)	277, 754
MhlI	GDGCHC	1 cut(s)	335
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	4 cut(s)	231, 519, 576, 925
MluNI	TGGCCA	1 cut(s)	428
MnlI	CCTC	5 cut(s)	32, 490, 499, 598, 838
Mox20I	TGGCCA	1 cut(s)	428
Mph1103I	ATGCAT	4 cut(s)	84, 99, 148, 903
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	4 cut(s)	342, 816, 933, 1090
MslI	CAYNNNNRTG	1 cut(s)	906
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	692
MwoI	GCNNNNNNNGC	4 cut(s)	359, 488, 971, 1081
NcoI	CCATGG	2 cut(s)	429, 562
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	7 cut(s)	110, 131, 277, 369, 754, 823, 916
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	803, 876
NsiI	ATGCAT	4 cut(s)	84, 99, 148, 903
PctI	GAATGC	1 cut(s)	692
PkrI	GCNGC	2 cut(s)	964, 1083
PmaCI	CACGTG	1 cut(s)	767
PmlI	CACGTG	1 cut(s)	767
Ppu21I	YACGTR	1 cut(s)	767
PspCI	CACGTG	1 cut(s)	767
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	277, 754
RseI	CAYNNNNRTG	1 cut(s)	906
SaqAI	TTAA	4 cut(s)	342, 816, 933, 1090
SatI	GCNGC	2 cut(s)	963, 1082
Sau3AI	GATC	7 cut(s)	110, 131, 277, 369, 754, 823, 916
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	6 cut(s)	106, 469, 902, 910, 963, 974
SfcI	CTRYAG	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	906
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	4 cut(s)	231, 519, 576, 925
SspMI	CTAG	3 cut(s)	275, 443, 726
StyI	CCWWGG	3 cut(s)	429, 562, 725
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	2 cut(s)	533, 769
TasI	AATT	4 cut(s)	231, 519, 576, 925
Tru1I	TTAA	4 cut(s)	342, 816, 933, 1090
Tru9I	TTAA	4 cut(s)	342, 816, 933, 1090
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	2 cut(s)	803, 876
TseI	GCWGC	2 cut(s)	962, 1081
Tsp45I	GTSAC	2 cut(s)	803, 876
TspDTI	ATGAA	3 cut(s)	354, 513, 824
TspRI	CASTG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	925
XmaJI	CCTAGG	1 cut(s)	725
XspI	CTAG	3 cut(s)	275, 443, 726
ZraI	GACGTC	1 cut(s)	531
Zsp2I	ATGCAT	4 cut(s)	84, 99, 148, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.