Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Forward (+)

23699654 .. 23701568

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20980.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGACTGGTTTAAAATTCTAATTGATTATAGTCAAATTTCTACACCATTTTACTATAAATCCGTCAAAAGTAGCGCCAAAAATTCTGATCATAATTCCGTACAAAACGAACTTTCAAATAATGACGCCCCCGACTCCATAGTACTCCACAAGCTCACACTGTCACACATGATGCAAGCCTTGTGCAAAAGGGGCCAACTTCAACAAGCTCTGAGACTCCTTCTCTCCAACCCAACCCAATTAAACTCTTATTATTCACTGTATATGAATATCTTACAGCTATGCATCGACGAACGAGCAGAAAGGGCCGGTCTTTTGGTTCACAGCCATGTAATTACAAATGGGTTTGGTTCAAATTTGAATTTATATACTAAGCTGATAATCTTTTACTGCAACATTGGTCGCATGGTTAGTGCCCGCAATGTGTTTGATAGAATGCGTGAGAGAAATGTCGTGTCGTGGACTGCTATGATTTCTGGGTATGTTAAAGGTGGGTGTTATGAGGACGGTTTGATGCTGTTTCTGAGTATGCGTCAGGCGGGTTTTAGAGCTAATCAGTTTGGGTATGGGAGCGCATTGAGGGCGTGTACGGGTTTGAGGTGTTTGGAAGTAGGGCAGCAGATACAAGGGTGTATTGTGAAAGGGAGGTTTGCTGAGAACTTGTTTGTGCAGAGTGCGTTGGTTGATTTTTATTCTAAGTGTGGGAAGATAGAGGATGCACGTTATTTGTTTGAGGAAATGAAGGTCAGGGACTTGGTTTCGTGGAATGCTATGATTGGCGGCTATGCTGTTCAGGGTTTTGCCGATGACTCGTTGCGTATTTTTCATTCGATGATGAAGGAAGATTTTTATACCATATATGTATCAATACCTTTACTTTTCCTCTTAATATTTATGTCTAATTTTCGTATGCGATCATTTAACTCAGGCATGATCCCTGATTGCTTCAGCTTGGTAAGTGTGTTGAGAGCCTTAACCGGAGACAGTGGTCGCATGAAGGTGAGTCAAATACATGGATTCATCATGCAACTGGGTTTTGGATCACACGAGGCTATAAGTGGATCACTAATCAATGCATATGCAAAATGTGGAAGGGTAGAGAGAGCTCATCAGATATACAAGAGCATGATAAAAAAAGACATTATATCGTGCACGGCACTGATAACTGGATATGCACGAGAAGGTAACTACAGCAGAGATGTGCTAGCTCTCTTTAAAGAAGTGACTCTTATGCGCATGGCACTGGATGGTATGATATTATGCTCCATGCTTAATATATGCGCAAATATTTCTTCATTGATCGATCAAATAGTCGATCTTTGGGAAGACAAATCCATGTCCTTACTTTTAAACACCAACCTTGTCATGATGTGGCCATGGGAAATGCTCTTGTTGACATGTATGCAAAAAGCGGAGAAATTGAAGATGCTAACCATGCTTTTGATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

484

Amino Acids

54.94

Weight (kDa)

8.88

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1235, 1282
AciI	CCGC	4 cut(s)	418, 539, 780, 1412
AclWI	GGATC	3 cut(s)	928, 1048, 1069
AcoI	YGGCCR	1 cut(s)	1373
AcsI	RAATTY	5 cut(s)	15, 36, 82, 355, 361
AcuI	CTGAAG	1 cut(s)	931
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	3 cut(s)	102, 144, 589
AflIII	ACRYGT	1 cut(s)	1397
AgsI	TTSAA	5 cut(s)	117, 203, 354, 361, 1423
AluBI	AGCT	8 cut(s)	154, 209, 280, 376, 551, 951, 1106, 1208
AluI	AGCT	8 cut(s)	154, 209, 280, 376, 551, 951, 1106, 1208
Alw21I	GWGCWC	2 cut(s)	1108, 1154
Alw26I	GTCTC	2 cut(s)	208, 975
Alw44I	GTGCAC	1 cut(s)	1150
AlwI	GGATC	3 cut(s)	928, 1048, 1069
AoxI	GGCC	3 cut(s)	193, 306, 1373
ApaLI	GTGCAC	1 cut(s)	1150
ApeKI	GCWGC	1 cut(s)	616
ApoI	RAATTY	5 cut(s)	15, 36, 82, 355, 361
AspLEI	GCGC	4 cut(s)	77, 575, 1236, 1283
AspS9I	GGNCC	2 cut(s)	193, 306
AsuHPI	GGTGA	1 cut(s)	1012
AsuNHI	GCTAGC	1 cut(s)	1204
BaeGI	GKGCMC	2 cut(s)	418, 1154
BaeI	ACNNNNGTAYC	2 cut(s)	614, 647
BalI	TGGCCA	1 cut(s)	1375
BanII	GRGCYC	1 cut(s)	1108
BauI	CACGAG	2 cut(s)	1046, 1176
BbsI	GAAGAC	1 cut(s)	1332
Bbv12I	GWGCWC	2 cut(s)	1108, 1154
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	1 cut(s)	1241
BceAI	ACGGC	1 cut(s)	1170
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	208, 975
BfaI	CTAG	1 cut(s)	1205
BfmI	CTRYAG	1 cut(s)	1189
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	2 cut(s)	617, 781
BlsI	GCNGC	2 cut(s)	618, 782
BmcAI	AGTACT	1 cut(s)	144
BmgT120I	GGNCC	2 cut(s)	193, 306
BmiI	GGNNCC	1 cut(s)	194
BmrI	ACTGGG	1 cut(s)	1040
BmsI	GCATC	5 cut(s)	162, 294, 504, 706, 1416
BmtI	GCTAGC	1 cut(s)	1208
BmuI	ACTGGG	1 cut(s)	1040
BoxI	GACNNNNGTC	1 cut(s)	987
BpiI	GAAGAC	1 cut(s)	1332
Bsa29I	ATCGAT	1 cut(s)	1302
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	1376
BsaWI	WCCGGW	1 cut(s)	977
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	4 cut(s)	11, 1035, 1171, 1248
Bse3DI	GCAATG	1 cut(s)	427
BseCI	ATCGAT	1 cut(s)	1302
BseDI	CCNNGG	1 cut(s)	1376
BseGI	GGATG	2 cut(s)	721, 1252
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	4 cut(s)	203, 515, 645, 939
BseNI	ACTGG	4 cut(s)	11, 1035, 1171, 1248
BseSI	GKGCMC	2 cut(s)	418, 1154
BseXI	GCAGC	1 cut(s)	628
BsgI	GTGCAG	1 cut(s)	689
BshFI	GGCC	3 cut(s)	195, 308, 1375
BshVI	ATCGAT	1 cut(s)	1302
BsiHKAI	GWGCWC	2 cut(s)	1108, 1154
BsiSI	CCGG	2 cut(s)	309, 978
BslFI	GGGAC	1 cut(s)	764
BsmAI	GTCTC	2 cut(s)	208, 975
BsmFI	GGGAC	1 cut(s)	764
BsmI	GAATGC	2 cut(s)	441, 772
BsnI	GGCC	3 cut(s)	195, 308, 1375
Bsp1286I	GDGCHC	3 cut(s)	418, 1108, 1154
Bsp143I	GATC	8 cut(s)	88, 914, 933, 1040, 1061, 1299, 1303, 1315
Bsp19I	CCATGG	1 cut(s)	1376
BspACI	CCGC	4 cut(s)	418, 539, 780, 1412
BspANI	GGCC	3 cut(s)	195, 308, 1375
BspCNI	CTCAG	4 cut(s)	204, 516, 646, 938
BspDI	ATCGAT	1 cut(s)	1302
BspHI	TCATGA	1 cut(s)	1365
BspLI	GGNNCC	1 cut(s)	194
BspOI	GCTAGC	1 cut(s)	1208
BspPI	GGATC	3 cut(s)	928, 1048, 1069
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	4 cut(s)	11, 1035, 1171, 1248
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	1376
BssMI	GATC	8 cut(s)	88, 914, 933, 1040, 1061, 1299, 1303, 1315
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	2 cut(s)	1046, 1176
BssT1I	CCWWGG	1 cut(s)	1376
Bst2BI	CACGAG	2 cut(s)	1046, 1176
Bst4CI	ACNGT	4 cut(s)	162, 261, 509, 986
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	177, 418, 1206
BstDEI	CTNAG	6 cut(s)	212, 372, 524, 654, 696, 925
BstDSI	CCRYGG	1 cut(s)	1376
BstF5I	GGATG	2 cut(s)	721, 1252
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	4 cut(s)	77, 575, 1236, 1283
BstKTI	GATC	8 cut(s)	91, 917, 936, 1043, 1064, 1302, 1306, 1318
BstMAI	GTCTC	2 cut(s)	208, 975
BstMBI	GATC	8 cut(s)	88, 914, 933, 1040, 1061, 1299, 1303, 1315
BstMWI	GCNNNNNNNGC	4 cut(s)	192, 305, 581, 1435
BstNSI	RCATGY	1 cut(s)	1401
BstPAI	GACNNNNGTC	1 cut(s)	987
BstSFI	CTRYAG	1 cut(s)	1189
BstSLI	GKGCMC	2 cut(s)	418, 1154
BstV1I	GCAGC	1 cut(s)	628
BstV2I	GAAGAC	1 cut(s)	1332
Bsu15I	ATCGAT	1 cut(s)	1302
BsuRI	GGCC	3 cut(s)	195, 308, 1375
BsuTUI	ATCGAT	1 cut(s)	1302
BtgI	CCRYGG	1 cut(s)	1376
BtsCI	GGATG	2 cut(s)	721, 1252
BtsIMutI	CAGTG	5 cut(s)	158, 257, 991, 1157, 1241
Cac8I	GCNNGC	3 cut(s)	177, 418, 1206
CciI	TCATGA	1 cut(s)	1365
CfoI	GCGC	4 cut(s)	77, 575, 1236, 1283
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	193, 306
ClaI	ATCGAT	1 cut(s)	1302
CseI	GACGC	2 cut(s)	134, 521
Csp6I	GTAC	3 cut(s)	101, 143, 588
CviQI	GTAC	3 cut(s)	101, 143, 588
DdeI	CTNAG	6 cut(s)	212, 372, 524, 654, 696, 925
DpnI	GATC	8 cut(s)	90, 916, 935, 1042, 1063, 1301, 1305, 1317
DpnII	GATC	8 cut(s)	88, 914, 933, 1040, 1061, 1299, 1303, 1315
DraI	TTTAAA	3 cut(s)	13, 1216, 1350
EaeI	YGGCCR	1 cut(s)	1373
Ecl136II	GAGCTC	1 cut(s)	1106
Eco130I	CCWWGG	1 cut(s)	1376
Eco24I	GRGCYC	1 cut(s)	1108
Eco53kI	GAGCTC	1 cut(s)	1106
Eco57I	CTGAAG	1 cut(s)	931
EcoICRI	GAGCTC	1 cut(s)	1106
EcoT14I	CCWWGG	1 cut(s)	1376
EcoT22I	ATGCAT	2 cut(s)	287, 1078
EcoT38I	GRGCYC	1 cut(s)	1108
ErhI	CCWWGG	1 cut(s)	1376
FalI	AAGNNNNNCTT	2 cut(s)	1212, 1244
FaqI	GGGAC	1 cut(s)	764
FauI	CCCGC	2 cut(s)	425, 532
FauNDI	CATATG	1 cut(s)	1078
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	617, 781
FokI	GGATG	2 cut(s)	728, 1259
FriOI	GRGCYC	1 cut(s)	1108
Fsp4HI	GCNGC	2 cut(s)	617, 781
FspAI	RTGCGCAY	1 cut(s)	1235
FspBI	CTAG	1 cut(s)	1205
FspI	TGCGCA	2 cut(s)	1235, 1282
GlaI	GCGC	4 cut(s)	76, 574, 1235, 1282
GluI	GCNGC	2 cut(s)	617, 781
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	195, 308, 1375
HapII	CCGG	2 cut(s)	309, 978
HgaI	GACGC	2 cut(s)	134, 521
HhaI	GCGC	4 cut(s)	77, 575, 1236, 1283
Hin1I	GRCGYC	1 cut(s)	126
Hin6I	GCGC	4 cut(s)	75, 573, 1234, 1281
HinP1I	GCGC	4 cut(s)	75, 573, 1234, 1281
HincII	GTYRAC	1 cut(s)	1395
HindII	GTYRAC	1 cut(s)	1395
HinfI	GANTC	6 cut(s)	134, 216, 809, 1003, 1017, 1225
HpaII	CCGG	2 cut(s)	309, 978
HphI	GGTGA	1 cut(s)	1012
Hpy166II	GTNNAC	5 cut(s)	322, 462, 588, 1152, 1395
Hpy188I	TCNGA	4 cut(s)	88, 213, 525, 1113
Hpy188III	TCNNGA	1 cut(s)	1366
Hpy8I	GTNNAC	5 cut(s)	322, 462, 588, 1152, 1395
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	6 cut(s)	230, 736, 832, 991, 1086, 1175
HpyCH4III	ACNGT	4 cut(s)	162, 261, 509, 986
HpyCH4IV	ACGT	1 cut(s)	721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	192, 305, 581, 1435
HpyF3I	CTNAG	6 cut(s)	212, 372, 524, 654, 696, 925
HpySE526I	ACGT	1 cut(s)	721
Hsp92I	GRCGYC	1 cut(s)	126
HspAI	GCGC	4 cut(s)	75, 573, 1234, 1281
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	8 cut(s)	88, 914, 933, 1040, 1061, 1299, 1303, 1315
LmnI	GCTCC	2 cut(s)	570, 1268
Lsp1109I	GCAGC	1 cut(s)	628
LweI	GCATC	5 cut(s)	162, 294, 504, 706, 1416
MaeI	CTAG	1 cut(s)	1205
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	3 cut(s)	162, 1184, 1222
MalI	GATC	8 cut(s)	90, 916, 935, 1042, 1063, 1301, 1305, 1317
MboI	GATC	8 cut(s)	88, 914, 933, 1040, 1061, 1299, 1303, 1315
MboII	GAAGA	5 cut(s)	718, 854, 1284, 1337, 1435
MhlI	GDGCHC	3 cut(s)	418, 1108, 1154
MlsI	TGGCCA	1 cut(s)	1375
MluNI	TGGCCA	1 cut(s)	1375
MlyI	GAGTC	5 cut(s)	128, 210, 803, 1012, 1219
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	8 cut(s)	496, 573, 591, 639, 706, 727, 893, 1042
Mox20I	TGGCCA	1 cut(s)	1375
Mph1103I	ATGCAT	2 cut(s)	287, 1078
MscI	TGGCCA	1 cut(s)	1375
MseI	TTAA	9 cut(s)	12, 242, 486, 887, 921, 974, 1215, 1272, 1349
MslI	CAYNNNNRTG	2 cut(s)	327, 998
Msp20I	TGGCCA	1 cut(s)	1375
MspI	CCGG	2 cut(s)	309, 978
Mva1269I	GAATGC	2 cut(s)	441, 772
MwoI	GCNNNNNNNGC	4 cut(s)	192, 305, 581, 1435
NcoI	CCATGG	1 cut(s)	1376
NdeI	CATATG	1 cut(s)	1078
NdeII	GATC	8 cut(s)	88, 914, 933, 1040, 1061, 1299, 1303, 1315
NheI	GCTAGC	1 cut(s)	1204
NlaIV	GGNNCC	1 cut(s)	194
NmuCI	GTSAC	2 cut(s)	162, 1222
NsbI	TGCGCA	2 cut(s)	1235, 1282
NsiI	ATGCAT	2 cut(s)	287, 1078
NspI	RCATGY	1 cut(s)	1401
PagI	TCATGA	1 cut(s)	1365
PciI	ACATGT	1 cut(s)	1397
PctI	GAATGC	2 cut(s)	441, 772
PfeI	GAWTC	1 cut(s)	1017
PkrI	GCNGC	2 cut(s)	618, 782
PleI	GAGTC	5 cut(s)	128, 210, 803, 1011, 1219
PpsI	GAGTC	5 cut(s)	128, 210, 803, 1011, 1219
PscI	ACATGT	1 cut(s)	1397
PshAI	GACNNNNGTC	1 cut(s)	987
Psp124BI	GAGCTC	1 cut(s)	1108
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	2 cut(s)	193, 306
RsaI	GTAC	3 cut(s)	102, 144, 589
RsaNI	GTAC	3 cut(s)	101, 143, 588
RseI	CAYNNNNRTG	2 cut(s)	327, 998
SacI	GAGCTC	1 cut(s)	1108
SaqAI	TTAA	9 cut(s)	12, 242, 486, 887, 921, 974, 1215, 1272, 1349
SatI	GCNGC	2 cut(s)	617, 781
Sau3AI	GATC	8 cut(s)	88, 914, 933, 1040, 1061, 1299, 1303, 1315
Sau96I	GGNCC	2 cut(s)	193, 306
ScaI	AGTACT	1 cut(s)	144
SchI	GAGTC	5 cut(s)	128, 210, 803, 1012, 1219
SduI	GDGCHC	3 cut(s)	418, 1108, 1154
SfaNI	GCATC	5 cut(s)	162, 294, 504, 706, 1416
SfcI	CTRYAG	1 cut(s)	1189
SmiMI	CAYNNNNRTG	2 cut(s)	327, 998
SsiI	CCGC	4 cut(s)	418, 539, 780, 1412
SspI	AATATT	2 cut(s)	891, 1288
SspMI	CTAG	1 cut(s)	1205
SstI	GAGCTC	1 cut(s)	1108
StyI	CCWWGG	1 cut(s)	1376
TaaI	ACNGT	4 cut(s)	162, 261, 509, 986
TaiI	ACGT	1 cut(s)	724
TaqI	TCGA	4 cut(s)	288, 830, 1302, 1314
TatI	WGTACW	1 cut(s)	142
TauI	GCSGC	1 cut(s)	783
TfiI	GAWTC	1 cut(s)	1017
Tru1I	TTAA	9 cut(s)	12, 242, 486, 887, 921, 974, 1215, 1272, 1349
Tru9I	TTAA	9 cut(s)	12, 242, 486, 887, 921, 974, 1215, 1272, 1349
TscAI	CASTG	5 cut(s)	165, 264, 991, 1164, 1248
TseFI	GTSAC	2 cut(s)	162, 1222
TseI	GCWGC	1 cut(s)	616
Tsp45I	GTSAC	2 cut(s)	162, 1222
TspDTI	ATGAA	7 cut(s)	281, 755, 815, 851, 1009, 1010, 1284
TspGWI	ACGGA	2 cut(s)	52, 88
TspRI	CASTG	5 cut(s)	165, 264, 991, 1164, 1248
VneI	GTGCAC	1 cut(s)	1150
XapI	RAATTY	5 cut(s)	15, 36, 82, 355, 361
XceI	RCATGY	1 cut(s)	1401
XspI	CTAG	1 cut(s)	1205
ZrmI	AGTACT	1 cut(s)	144
Zsp2I	ATGCAT	2 cut(s)	287, 1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.