Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Reverse (-)

19052768 .. 19053526

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG191300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCCAAACATAATGCAAGCATTGTGGAAAAGGAGTCACCTTCAAGAAGCTCAGAGACTTGCTCAGTCTAACCCAACTCACTTAGACAATTACTATTGCTTGTATATGAAGATTCTGCAACTCTGCATCGATCAACGAGTAGAAAGACCCGGTCTTTTGGCTCACACCCATGTGATCACAAATGGGTATGCTTCAAATTTGAATTTGAACACCAAATTGATCAACTTTTACTGCAAATTTGGCCGCGTGGTTAGTGCTCGCAAGGTGTTCGATAAAATGCCTGAGAGAAATGTTGTGTCTTGGACCTCTATGGCTTCTGGGTATGCTCAAAGTGGAAGCTATGAGAAAGCTTTGGGGGTGTTTTTGGAAATGCGTCGGGCGGGTTTCAGAGCTAATCAGTTTGGGTATGGGAGTGCATTGAGGGCATGCACTGGTTTGAGGTCTTTGGAAGTAGGAATGCAGATACAGGGGTGTCTTGTGAAAGGAAGGTTTGCTGAGAACTTGTTTGTGCTGAGTGCACTAGTTGATTTTCATGCCAAGTGTGGAAAGATAGAGGATGCTTGCTGTGTTTTCGAGGCAATGTCGGAAAGGGACTTGGTTTCTTGGAATGCAATCATTGGAGGGTATGCTGTTCAGGGTTTTAGTGACGACTCGTTGCGAATGTTTCGGTCAATGATGAGGGAAGGTGAATGTTTATGCTTTTGGTTAAATTTTCAGTGTTTGGTAGTCTTGTTGTTGTGCTCCTTTGTGTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

252

Amino Acids

28.58

Weight (kDa)

8.83

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	96 - 143	1.9e-07	PPR repeat family
PPR	PF01535	99 - 129	1.2e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	246
AciI	CCGC	2 cut(s)	244, 380
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	4 cut(s)	196, 202, 236, 709
AgsI	TTSAA	4 cut(s)	44, 195, 202, 208
AhlI	ACTAGT	1 cut(s)	520
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	4 cut(s)	50, 339, 350, 392
AluI	AGCT	4 cut(s)	50, 339, 350, 392
Alw21I	GWGCWC	3 cut(s)	259, 520, 743
Alw26I	GTCTC	1 cut(s)	49
Alw44I	GTGCAC	1 cut(s)	516
AoxI	GGCC	1 cut(s)	241
ApaLI	GTGCAC	1 cut(s)	516
ApoI	RAATTY	4 cut(s)	196, 202, 236, 709
AspS9I	GGNCC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	29, 698
AvaII	GGWCC	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	520
BaeI	ACNNNNGTAYC	2 cut(s)	455, 488
Bbv12I	GWGCWC	3 cut(s)	259, 520, 743
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BclI	TGATCA	2 cut(s)	174, 219
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	49
BcuI	ACTAGT	1 cut(s)	520
BfaI	CTAG	1 cut(s)	521
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	135, 547
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	436
Bse3DI	GCAATG	1 cut(s)	585
BseCI	ATCGAT	1 cut(s)	129
BseGI	GGATG	1 cut(s)	562
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	5 cut(s)	65, 77, 273, 486, 503
BseNI	ACTGG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	520
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	129
BsiHKAI	GWGCWC	3 cut(s)	259, 520, 743
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	605
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	605
BsmI	GAATGC	2 cut(s)	462, 613
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	3 cut(s)	259, 520, 743
Bsp143I	GATC	3 cut(s)	130, 174, 219
BspACI	CCGC	2 cut(s)	244, 380
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	5 cut(s)	64, 76, 274, 487, 504
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	1 cut(s)	436
BssMI	GATC	3 cut(s)	130, 174, 219
BstC8I	GCNNGC	4 cut(s)	18, 259, 427, 562
BstDEI	CTNAG	6 cut(s)	51, 63, 82, 282, 495, 512
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	3 cut(s)	133, 177, 222
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	3 cut(s)	130, 174, 219
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 422
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	520
BstUI	CGCG	1 cut(s)	246
Bsu15I	ATCGAT	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	243
BsuTUI	ATCGAT	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	429, 722
Cac8I	GCNNGC	4 cut(s)	18, 259, 427, 562
Cfr13I	GGNCC	1 cut(s)	303
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	1 cut(s)	362
CspCI	CAANNNNNGTGG	2 cut(s)	5, 40
CviAII	CATG	3 cut(s)	170, 426, 533
CviJI	RGCY	7 cut(s)	50, 161, 243, 314, 339, 350, 392
CviKI_1	RGCY	7 cut(s)	50, 161, 243, 314, 339, 350, 392
DdeI	CTNAG	6 cut(s)	51, 63, 82, 282, 495, 512
DpnI	GATC	3 cut(s)	132, 176, 221
DpnII	GATC	3 cut(s)	130, 174, 219
EaeI	YGGCCR	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	303
FaeI	CATG	3 cut(s)	173, 429, 536
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	3 cut(s)	169, 425, 532
FauI	CCCGC	1 cut(s)	373
FbaI	TGATCA	2 cut(s)	174, 219
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	362
Hin1II	CATG	3 cut(s)	173, 429, 536
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	3 cut(s)	34, 112, 650
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	29, 698
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	3 cut(s)	54, 389, 586
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	518
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	3 cut(s)	50, 480, 677
HpyCH4V	TGCA	9 cut(s)	16, 118, 126, 234, 416, 429, 460, 518, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 422
HpyF3I	CTNAG	6 cut(s)	51, 63, 82, 282, 495, 512
Hsp92II	CATG	3 cut(s)	173, 429, 536
Ksp22I	TGATCA	2 cut(s)	174, 219
Kzo9I	GATC	3 cut(s)	130, 174, 219
LmnI	GCTCC	1 cut(s)	746
LpnPI	CCDG	6 cut(s)	163, 294, 303, 417, 452, 620
LweI	GCATC	2 cut(s)	135, 547
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	2 cut(s)	35, 644
MalI	GATC	3 cut(s)	132, 176, 221
MboI	GATC	3 cut(s)	130, 174, 219
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	3 cut(s)	259, 520, 743
MluCI	AATT	6 cut(s)	88, 196, 202, 215, 236, 709
MlyI	GAGTC	2 cut(s)	43, 644
MmeI	TCCRAC	1 cut(s)	564
MnlI	CCTC	7 cut(s)	316, 414, 432, 547, 568, 614, 672
MseI	TTAA	1 cut(s)	707
MslI	CAYNNNNRTG	2 cut(s)	168, 170
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	150
Mva1269I	GAATGC	2 cut(s)	462, 613
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	240, 422
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	130, 174, 219
NlaIII	CATG	3 cut(s)	173, 429, 536
NmuCI	GTSAC	2 cut(s)	35, 644
NspI	RCATGY	1 cut(s)	429
OliI	CACNNNNGTG	1 cut(s)	170
PaeI	GCATGC	1 cut(s)	429
PctI	GAATGC	2 cut(s)	462, 613
PfeI	GAWTC	1 cut(s)	112
PflFI	GACNNNGTC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	2 cut(s)	42, 644
PpsI	GAGTC	2 cut(s)	42, 644
PspPI	GGNCC	1 cut(s)	303
PsyI	GACNNNGTC	1 cut(s)	150
RseI	CAYNNNNRTG	2 cut(s)	168, 170
SaqAI	TTAA	1 cut(s)	707
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	3 cut(s)	130, 174, 219
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	2 cut(s)	43, 644
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	3 cut(s)	259, 520, 743
SfaNI	GCATC	2 cut(s)	135, 547
SinI	GGWCC	1 cut(s)	303
SmiMI	CAYNNNNRTG	2 cut(s)	168, 170
SpeI	ACTAGT	1 cut(s)	520
SphI	GCATGC	1 cut(s)	429
Sse9I	AATT	6 cut(s)	88, 196, 202, 215, 236, 709
SsiI	CCGC	2 cut(s)	244, 380
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	148
TaqI	TCGA	3 cut(s)	129, 270, 573
TaqII	GACCGA	1 cut(s)	657
TasI	AATT	6 cut(s)	88, 196, 202, 215, 236, 709
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	707
Tru9I	TTAA	1 cut(s)	707
TscAI	CASTG	2 cut(s)	436, 722
TseFI	GTSAC	2 cut(s)	35, 644
Tsp45I	GTSAC	2 cut(s)	35, 644
TspDTI	ATGAA	2 cut(s)	122, 521
TspRI	CASTG	2 cut(s)	436, 722
Tth111I	GACNNNGTC	1 cut(s)	150
VneI	GTGCAC	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	303
XapI	RAATTY	4 cut(s)	196, 202, 236, 709
XceI	RCATGY	1 cut(s)	429
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.