Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Reverse (-)

18255716 .. 18257591

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG174200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGTCACACATAATGCAAGCATTGTGGAAAAGGAGTCACCTTCAAGAAGCTCCGAGACTTGTTCAGTCTAACCCAACTCACTTGGACCATTACTATTGCTTGTATATGAAGATTCTGCAACTCTGCATCGATGAGCGAGTAGAAAGACCCGGTCTTTTGGCTCACACCCATGTGATCACAAATGGGTTTGCTTCAAATTTGAATTTGAACACCAAATTGATCAACTTTTACTGCAAATTTGGCCGCGTGGTCAGTGCTCGCAAGGTGTTCGATAAAATGCCTGAGAGAAATGTTGTGTCTTGGACCTCTATGGTTTCTGGGTATGCTCAGAGTGGAAGCTATGAGAAGGCTATAGGGGTATTTTTGGAAATGCGTCGGGCGGGTTTCAGAGCTAATCAGTTTGGGTATGGGAGTGCATTGAGGGCATGCACTGGTTTGAGGTATTTGGAAGGAGGGATGCAGATACAGGGGTGTGTTGTGAAAGGAAGATTTTCTGAGAACTTATTTGTGCTGAGTGCATTGGTTGATTTTCACTCCAAGTGCGGAAAGATAGAGGATGCTTGTTGTGTTTTCGAGGCAATGTCGGAAAGGGACCTGGTTTCTTGGAATGCAATCATTGGAGGGTATGCTGTTCAGGGTTTTAGTGAGGACTCGTTGCGAATGTTTCGGTCAATGATGAGGGAAGGCATGGTTCCTGATTGCTTCACCTTCGGGAGTGTTTTGAGAGGCTTGGCTGGAGATAGTGGTTTGGTAAAGGTTAGTCAAATGCATGGACTGATTATGCATCTGGGTTTTGGATCACGCAAAAGTTTAAGTGGATCTCTAATCAATGCATATGCAAAATGTGGGAAGGTAGAGTCTGCACATAGAACATACAGGAGTATGTTAGAAAAGGACATTATATCTTGCACTGCGCTAATTACTGGATACGCACGAGAAGGTAACTACAGCGGAGATGTGCTAGATCTCTTCAAAGAGATAACCGTTATGAGCATGAGACTGGATGGTGTCATATTGTGCTCCATGCTTAATATATGTGCAAATGTTGCTTCATTGATCTTGGGAAGACAAATCCATGCACTTATGTTGAAGCACCAACCTTGTCTTGATGTGGCCATGGGAAATGCTCTTGTTGATATGTATGCAAAATGCGGAGAAATTGAAGATGCTAACCATGCTTTTGAGGAGATGGAGGAAAAGAATGTAATTTCATGGACGTCTCTGATTTCTGGCTATGGAAGGAATGGCCATGGAGATAAAGCAATTGCATTGTATAAAAGGATGGAACTAGAGGGATTGAAACCTAATGATATCACATTCTTATCTCTTCTCTTTGCTTGTAGCCATACTGGATTGACAAGTGAAGGGTGGGAATGCTTCAATACTATGCTTAGCAAATACAACATCTTGCCTCGGGCTGAGCATTTTTCTTGCTTAGTAGATCTTTATGCACGTGCAGGTTTGCTGGAAGATGTGCATAAGTTGCTATGTGACATGAACATTAAGCCTAATCCCTCACTTTGGGGAGCTGTTCTTGGGGGATGTAGCACCTATGGTAATAAGTCACTTGGAGAAGTGGCATCAATGCATCTTTGTGATATTGATCCTGAGAATTCAGTTAACTATGTTGTTCTCGGAAGCATCTATGCTGCATCTGGTGCATGGGACAATGCTTTGGAAACACGAGATTTGTTAGAGAAGAGAAGTTTGAAAAAAGAACCAGCGCACAGCCTTTTACATTCCAGAACAAATAATATGTTGCTTTTGCAGCCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

592

Amino Acids

65.75

Weight (kDa)

7.52

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	96 - 143	2.9e-08	PPR repeat family
PPR	PF01535	99 - 129	1.1e-08	PPR repeat
PPR_2	PF13041	198 - 245	5.3e-09	PPR repeat family
PPR_2	PF13041	400 - 448	5.1e-12	PPR repeat family
PPR	PF01535	403 - 433	3.8e-08	PPR repeat
E_motif	PF20431	518 - 577	2.3e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1220
Acc36I	ACCTGC	1 cut(s)	1448
AccII	CGCG	1 cut(s)	246
AciI	CCGC	5 cut(s)	244, 380, 543, 951, 1152
AclWI	GGATC	3 cut(s)	805, 826, 1598
AcoI	YGGCCR	3 cut(s)	241, 1113, 1246
AcsI	RAATTY	4 cut(s)	196, 202, 236, 1612
AcvI	CACGTG	1 cut(s)	1454
AcyI	GRCGYC	1 cut(s)	1217
AfiI	CCNNNNNNNGG	1 cut(s)	1521
AjnI	CCWGG	1 cut(s)	594
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	4 cut(s)	50, 339, 392, 1529
AluI	AGCT	4 cut(s)	50, 339, 392, 1529
Alw21I	GWGCWC	2 cut(s)	259, 1022
Alw26I	GTCTC	3 cut(s)	49, 991, 1224
AlwI	GGATC	3 cut(s)	805, 826, 1598
Ama87I	CYCGRG	1 cut(s)	1413
AoxI	GGCC	3 cut(s)	241, 1113, 1246
ApeKI	GCWGC	2 cut(s)	1649, 1768
ApoI	RAATTY	4 cut(s)	196, 202, 236, 1612
Asp700I	GAANNNNTTC	1 cut(s)	490
AspLEI	GCGC	2 cut(s)	916, 1726
AspS9I	GGNCC	3 cut(s)	85, 303, 592
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	29, 697
AvaI	CYCGRG	1 cut(s)	1413
AvaII	GGWCC	3 cut(s)	85, 303, 592
BaeI	ACNNNNGTAYC	2 cut(s)	455, 488
BalI	TGGCCA	2 cut(s)	1115, 1248
BauI	CACGAG	2 cut(s)	933, 1683
BbrPI	CACGTG	1 cut(s)	1454
BbsI	GAAGAC	1 cut(s)	1072
Bbv12I	GWGCWC	2 cut(s)	259, 1022
BbvI	GCAGC	1 cut(s)	1636
BccI	CCATC	3 cut(s)	998, 1183, 1276
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	1 cut(s)	596
BciVI	GTATCC	1 cut(s)	920
BclI	TGATCA	2 cut(s)	174, 219
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	3 cut(s)	49, 991, 1224
BfaI	CTAG	2 cut(s)	962, 1289
BfmI	CTRYAG	2 cut(s)	351, 946
BfuAI	ACCTGC	1 cut(s)	1448
BfuI	GTATCC	1 cut(s)	920
BglII	AGATCT	2 cut(s)	964, 1441
BisI	GCNGC	3 cut(s)	244, 1650, 1769
BlpI	GCTNAGC	2 cut(s)	1391, 1419
BlsI	GCNGC	3 cut(s)	245, 1651, 1770
Bme1390I	CCNGG	2 cut(s)	150, 596
Bme18I	GGWCC	3 cut(s)	85, 303, 592
BmeT110I	CYCGRG	1 cut(s)	1413
BmgT120I	GGNCC	3 cut(s)	85, 303, 592
BmiI	GGNNCC	2 cut(s)	593, 693
BmrFI	CCNGG	2 cut(s)	150, 596
BmsI	GCATC	9 cut(s)	135, 447, 547, 793, 1156, 1589, 1597, 1650, 1661
BpiI	GAAGAC	1 cut(s)	1072
BpmI	CTGGAG	1 cut(s)	756
Bpu1102I	GCTNAGC	2 cut(s)	1391, 1419
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	1454
BsaBI	GATNNNNATC	1 cut(s)	1602
BsaHI	GRCGYC	1 cut(s)	1217
BsaJI	CCNNGG	3 cut(s)	1116, 1249, 1412
Bsc4I	CCNNNNNNNGG	1 cut(s)	1521
Bse1I	ACTGG	4 cut(s)	436, 928, 1005, 1354
Bse3DI	GCAATG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	1602
BseBI	CCWGG	1 cut(s)	596
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	3 cut(s)	1116, 1249, 1412
BseGI	GGATG	5 cut(s)	462, 562, 1009, 1287, 1547
BseJI	GATNNNNATC	1 cut(s)	1602
BseLI	CCNNNNNNNGG	1 cut(s)	1521
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	6 cut(s)	273, 341, 486, 503, 1410, 1599
BseNI	ACTGG	4 cut(s)	436, 928, 1005, 1354
BseRI	GAGGAG	1 cut(s)	1199
BseXI	GCAGC	1 cut(s)	1636
BsgI	GTGCAG	2 cut(s)	846, 1476
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	243, 1115, 1248
BshVI	ATCGAT	1 cut(s)	129
BsiHKAI	GWGCWC	2 cut(s)	259, 1022
BsiHKCI	CYCGRG	1 cut(s)	1413
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	2 cut(s)	605, 1679
BslI	CCNNNNNNNGG	1 cut(s)	1521
BsmAI	GTCTC	3 cut(s)	49, 991, 1224
BsmBI	CGTCTC	1 cut(s)	1224
BsmFI	GGGAC	2 cut(s)	605, 1679
BsmI	GAATGC	2 cut(s)	613, 1379
BsnI	GGCC	3 cut(s)	243, 1115, 1248
BsoBI	CYCGRG	1 cut(s)	1413
Bsp1286I	GDGCHC	2 cut(s)	259, 1022
Bsp143I	GATC	8 cut(s)	174, 219, 797, 818, 964, 1056, 1441, 1603
Bsp1720I	GCTNAGC	2 cut(s)	1391, 1419
Bsp19I	CCATGG	2 cut(s)	1116, 1249
BspACI	CCGC	5 cut(s)	244, 380, 543, 951, 1152
BspANI	GGCC	3 cut(s)	243, 1115, 1248
BspCNI	CTCAG	6 cut(s)	274, 340, 487, 504, 1411, 1600
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	593, 693
BspMI	ACCTGC	1 cut(s)	1448
BspPI	GGATC	3 cut(s)	805, 826, 1598
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	4 cut(s)	436, 928, 1005, 1354
BssECI	CCNNGG	3 cut(s)	1116, 1249, 1412
BssMI	GATC	8 cut(s)	174, 219, 797, 818, 964, 1056, 1441, 1603
BssNI	GRCGYC	1 cut(s)	1217
BssSI	CACGAG	2 cut(s)	933, 1683
BssT1I	CCWWGG	2 cut(s)	1116, 1249
Bst2BI	CACGAG	2 cut(s)	933, 1683
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	1 cut(s)	985
Bst6I	CTCTTC	3 cut(s)	974, 1332, 1694
BstACI	GRCGYC	1 cut(s)	1217
BstAPI	GCANNNNNTGC	3 cut(s)	1046, 1483, 1658
BstBAI	YACGTR	1 cut(s)	1454
BstC8I	GCNNGC	3 cut(s)	18, 259, 427
BstDEI	CTNAG	8 cut(s)	282, 327, 495, 512, 1391, 1419, 1435, 1608
BstDSI	CCRYGG	2 cut(s)	1116, 1249
BstF5I	GGATG	5 cut(s)	462, 562, 1009, 1287, 1547
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	916, 1726
BstKTI	GATC	8 cut(s)	177, 222, 800, 821, 967, 1059, 1444, 1606
BstMAI	GTCTC	3 cut(s)	49, 991, 1224
BstMBI	GATC	8 cut(s)	174, 219, 797, 818, 964, 1056, 1441, 1603
BstMWI	GCNNNNNNNGC	7 cut(s)	240, 422, 1046, 1175, 1483, 1658, 1768
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	148, 594
BstSFI	CTRYAG	2 cut(s)	351, 946
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	1636
BstV2I	GAAGAC	1 cut(s)	1072
BstX2I	RGATCY	3 cut(s)	818, 964, 1441
BstYI	RGATCY	3 cut(s)	818, 964, 1441
Bsu15I	ATCGAT	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	3 cut(s)	243, 1115, 1248
BsuTUI	ATCGAT	1 cut(s)	129
BtgI	CCRYGG	2 cut(s)	1116, 1249
BtsCI	GGATG	5 cut(s)	462, 562, 1009, 1287, 1547
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	3 cut(s)	259, 429, 909
BveI	ACCTGC	1 cut(s)	1448
Cac8I	GCNNGC	3 cut(s)	18, 259, 427
CfoI	GCGC	2 cut(s)	916, 1726
Cfr13I	GGNCC	3 cut(s)	85, 303, 592
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	1 cut(s)	362
CsiI	ACCWGGT	1 cut(s)	594
CspCI	CAANNNNNGTGG	2 cut(s)	5, 40
DdeI	CTNAG	8 cut(s)	282, 327, 495, 512, 1391, 1419, 1435, 1608
DpnI	GATC	8 cut(s)	176, 221, 799, 820, 966, 1058, 1443, 1605
DpnII	GATC	8 cut(s)	174, 219, 797, 818, 964, 1056, 1441, 1603
EaeI	YGGCCR	3 cut(s)	241, 1113, 1246
Eam1104I	CTCTTC	3 cut(s)	974, 1332, 1694
EarI	CTCTTC	3 cut(s)	974, 1332, 1694
Eco130I	CCWWGG	2 cut(s)	1116, 1249
Eco32I	GATATC	1 cut(s)	1312
Eco47I	GGWCC	3 cut(s)	85, 303, 592
Eco72I	CACGTG	1 cut(s)	1454
Eco88I	CYCGRG	1 cut(s)	1413
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRI	GAATTC	1 cut(s)	1612
EcoRII	CCWGG	1 cut(s)	594
EcoRV	GATATC	1 cut(s)	1312
EcoT14I	CCWWGG	2 cut(s)	1116, 1249
EcoT22I	ATGCAT	4 cut(s)	771, 786, 835, 1590
ErhI	CCWWGG	2 cut(s)	1116, 1249
Esp3I	CGTCTC	1 cut(s)	1224
FaqI	GGGAC	2 cut(s)	605, 1679
FauI	CCCGC	1 cut(s)	373
FauNDI	CATATG	1 cut(s)	835
FbaI	TGATCA	2 cut(s)	174, 219
Fnu4HI	GCNGC	3 cut(s)	244, 1650, 1769
FokI	GGATG	5 cut(s)	469, 569, 1016, 1294, 1554
Fsp4HI	GCNGC	3 cut(s)	244, 1650, 1769
FspBI	CTAG	2 cut(s)	962, 1289
GlaI	GCGC	2 cut(s)	915, 1725
GluI	GCNGC	3 cut(s)	244, 1650, 1769
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	3 cut(s)	243, 1115, 1248
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	2 cut(s)	916, 1726
Hin1I	GRCGYC	1 cut(s)	1217
Hin6I	GCGC	2 cut(s)	914, 1724
HinP1I	GCGC	2 cut(s)	914, 1724
HincII	GTYRAC	1 cut(s)	1621
HindII	GTYRAC	1 cut(s)	1621
HinfI	GANTC	4 cut(s)	34, 112, 650, 857
HpaI	GTTAAC	1 cut(s)	1621
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	29, 697
Hpy166II	GTNNAC	1 cut(s)	1621
Hpy188I	TCNGA	7 cut(s)	54, 330, 389, 496, 586, 1224, 1637
Hpy188III	TCNNGA	6 cut(s)	44, 695, 712, 1106, 1607, 1743
Hpy8I	GTNNAC	1 cut(s)	1621
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	9 cut(s)	50, 340, 443, 677, 718, 844, 932, 1233, 1358
HpyCH4III	ACNGT	1 cut(s)	985
HpyCH4IV	ACGT	2 cut(s)	1217, 1453
HpyF10VI	GCNNNNNNNGC	7 cut(s)	240, 422, 1046, 1175, 1483, 1658, 1768
HpyF3I	CTNAG	8 cut(s)	282, 327, 495, 512, 1391, 1419, 1435, 1608
HpySE526I	ACGT	2 cut(s)	1217, 1453
Hsp92I	GRCGYC	1 cut(s)	1217
HspAI	GCGC	2 cut(s)	914, 1724
Ksp22I	TGATCA	2 cut(s)	174, 219
KspAI	GTTAAC	1 cut(s)	1621
Kzo9I	GATC	8 cut(s)	174, 219, 797, 818, 964, 1056, 1441, 1603
LmnI	GCTCC	3 cut(s)	55, 1025, 1526
Lsp1109I	GCAGC	1 cut(s)	1636
LweI	GCATC	9 cut(s)	135, 447, 547, 793, 1156, 1589, 1597, 1650, 1661
MabI	ACCWGGT	1 cut(s)	594
MaeI	CTAG	2 cut(s)	962, 1289
MaeII	ACGT	2 cut(s)	1217, 1453
MaeIII	GTNAC	5 cut(s)	3, 35, 941, 1490, 1563
MalI	GATC	8 cut(s)	176, 221, 799, 820, 966, 1058, 1443, 1605
MboI	GATC	8 cut(s)	174, 219, 797, 818, 964, 1056, 1441, 1603
MboII	GAAGA	8 cut(s)	121, 498, 961, 1077, 1175, 1319, 1481, 1711
MfeI	CAATTG	1 cut(s)	1263
MflI	RGATCY	3 cut(s)	818, 964, 1441
MhlI	GDGCHC	2 cut(s)	259, 1022
MlsI	TGGCCA	2 cut(s)	1115, 1248
MluCI	AATT	9 cut(s)	196, 202, 215, 236, 918, 1158, 1206, 1263, 1612
MluNI	TGGCCA	2 cut(s)	1115, 1248
MlyI	GAGTC	3 cut(s)	43, 644, 866
MmeI	TCCRAC	1 cut(s)	564
Mox20I	TGGCCA	2 cut(s)	1115, 1248
Mph1103I	ATGCAT	4 cut(s)	771, 786, 835, 1590
MroXI	GAANNNNTTC	1 cut(s)	490
MscI	TGGCCA	2 cut(s)	1115, 1248
MseI	TTAA	5 cut(s)	812, 1029, 1503, 1620, 1777
MslI	CAYNNNNRTG	3 cut(s)	168, 170, 1593
Msp20I	TGGCCA	2 cut(s)	1115, 1248
MspA1I	CMGCKG	1 cut(s)	951
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	150, 596
MunI	CAATTG	1 cut(s)	1263
Mva1269I	GAATGC	2 cut(s)	613, 1379
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	7 cut(s)	240, 422, 1046, 1175, 1483, 1658, 1768
NciI	CCSGG	1 cut(s)	150
NcoI	CCATGG	2 cut(s)	1116, 1249
NdeI	CATATG	1 cut(s)	835
NdeII	GATC	8 cut(s)	174, 219, 797, 818, 964, 1056, 1441, 1603
NlaIV	GGNNCC	2 cut(s)	593, 693
NmuCI	GTSAC	4 cut(s)	3, 35, 1490, 1563
NsiI	ATGCAT	4 cut(s)	771, 786, 835, 1590
NspI	RCATGY	1 cut(s)	429
OliI	CACNNNNGTG	1 cut(s)	170
PaeI	GCATGC	1 cut(s)	429
PctI	GAATGC	2 cut(s)	613, 1379
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	112
PflFI	GACNNNGTC	1 cut(s)	150
PkrI	GCNGC	3 cut(s)	245, 1651, 1770
PleI	GAGTC	3 cut(s)	42, 644, 865
PmaCI	CACGTG	1 cut(s)	1454
PmlI	CACGTG	1 cut(s)	1454
PpsI	GAGTC	3 cut(s)	42, 644, 865
Ppu21I	YACGTR	1 cut(s)	1454
PpuMI	RGGWCCY	1 cut(s)	592
Psp5II	RGGWCCY	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	594
PspCI	CACGTG	1 cut(s)	1454
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	593, 693
PspPI	GGNCC	3 cut(s)	85, 303, 592
PspPPI	RGGWCCY	1 cut(s)	592
PsuI	RGATCY	3 cut(s)	818, 964, 1441
PsyI	GACNNNGTC	1 cut(s)	150
RseI	CAYNNNNRTG	3 cut(s)	168, 170, 1593
SaqAI	TTAA	5 cut(s)	812, 1029, 1503, 1620, 1777
SatI	GCNGC	3 cut(s)	244, 1650, 1769
Sau3AI	GATC	8 cut(s)	174, 219, 797, 818, 964, 1056, 1441, 1603
Sau96I	GGNCC	3 cut(s)	85, 303, 592
SchI	GAGTC	3 cut(s)	43, 644, 866
ScrFI	CCNGG	2 cut(s)	150, 596
SduI	GDGCHC	2 cut(s)	259, 1022
SexAI	ACCWGGT	1 cut(s)	594
SfaNI	GCATC	9 cut(s)	135, 447, 547, 793, 1156, 1589, 1597, 1650, 1661
SfcI	CTRYAG	2 cut(s)	351, 946
SinI	GGWCC	3 cut(s)	85, 303, 592
SmiMI	CAYNNNNRTG	3 cut(s)	168, 170, 1593
SphI	GCATGC	1 cut(s)	429
Sse9I	AATT	9 cut(s)	196, 202, 215, 236, 918, 1158, 1206, 1263, 1612
SsiI	CCGC	5 cut(s)	244, 380, 543, 951, 1152
SspMI	CTAG	2 cut(s)	962, 1289
StyD4I	CCNGG	2 cut(s)	148, 594
StyI	CCWWGG	2 cut(s)	1116, 1249
TaaI	ACNGT	1 cut(s)	985
TaiI	ACGT	2 cut(s)	1220, 1456
TaqI	TCGA	3 cut(s)	129, 270, 573
TaqII	GACCGA	1 cut(s)	657
TasI	AATT	9 cut(s)	196, 202, 215, 236, 918, 1158, 1206, 1263, 1612
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	5 cut(s)	812, 1029, 1503, 1620, 1777
Tru9I	TTAA	5 cut(s)	812, 1029, 1503, 1620, 1777
TscAI	CASTG	3 cut(s)	259, 436, 916
TseFI	GTSAC	4 cut(s)	3, 35, 1490, 1563
TseI	GCWGC	2 cut(s)	1649, 1768
Tsp45I	GTSAC	4 cut(s)	3, 35, 1490, 1563
TspDTI	ATGAA	4 cut(s)	122, 1041, 1200, 1511
TspRI	CASTG	3 cut(s)	259, 436, 916
Tth111I	GACNNNGTC	1 cut(s)	150
VpaK11BI	GGWCC	3 cut(s)	85, 303, 592
XapI	RAATTY	4 cut(s)	196, 202, 236, 1612
XceI	RCATGY	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	490
XspI	CTAG	2 cut(s)	962, 1289
ZraI	GACGTC	1 cut(s)	1218
Zsp2I	ATGCAT	4 cut(s)	771, 786, 835, 1590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.