Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Forward (+)

75934335 .. 75934997

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00054560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGAAATGCTCTTGTTGATATGTATGCAAAATGCGGAGAAATTGAAGATGCTAACCATGCTTTTGAGGAGATGGAGGAAAAGAATGTAATTTCATGGACGTCTCTGATTTCTGGATATGGAAGGAATGGCCATGGAGATAAAGCAATTGCATTGTATAAAAGGATGGAACTAGAGGGATTGAAACCTAATGATATCACATTCTTATCTCTTCTCTTTGCTTGTAGCCATACTGGATTGACTAGTGAAGGGTGGGAATGCTTCAATACTATGCTTAGCAAATACAACATCTTGCCTCGGGCTGAGCATTTTTCTTGCTTAGTAGATCTTTATGCACGTGCAGGTTTGCTGGAAAATGTGCATAAGTTGATATGTGACATGAACATTAAGCCTGATCCCTCACTTTGGGGAGCTGTTCTTGGGGGATGTAGCACCTATGGTAATAAGTCACTTGGAGAAGTGGCGTCAATGCATCTTTGTGATATTGATCCTGAGAATTCAGTTAACTATGTTGTTCTTGGAAGCATCTATGCTGCATCTGGTGCATGGGACAATGCTTTGGAAACACGAGATTTGTTAGAGAAGAGAAGTTTGAAAAAAGAACCAGCGCACAGCCTTTTACATTCCAGAACAAGCAACATATTATTTTTGCAGCCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

220

Amino Acids

24.34

Weight (kDa)

5.34

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	28 - 76	1.2e-12	PPR repeat family
PPR	PF01535	31 - 61	1e-08	PPR repeat
E_motif	PF20431	146 - 205	4.9e-09	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	332
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	2 cut(s)	389, 482
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	496
AcvI	CACGTG	1 cut(s)	338
AcyI	GRCGYC	2 cut(s)	101, 464
AfiI	CCNNNNNNNGG	1 cut(s)	405
AgsI	TTSAA	4 cut(s)	47, 184, 265, 595
AhlI	ACTAGT	1 cut(s)	242
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	2 cut(s)	389, 482
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	533, 652
ApoI	RAATTY	1 cut(s)	496
AspLEI	GCGC	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	132
BauI	CACGAG	1 cut(s)	567
BbrPI	CACGTG	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	2 cut(s)	67, 160
BcoDI	GTCTC	1 cut(s)	108
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	2 cut(s)	173, 243
BfuAI	ACCTGC	1 cut(s)	332
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	2 cut(s)	534, 653
BlpI	GCTNAGC	2 cut(s)	275, 303
BlsI	GCNGC	2 cut(s)	535, 654
BmeT110I	CYCGRG	1 cut(s)	297
BmsI	GCATC	4 cut(s)	40, 481, 534, 545
Bpu1102I	GCTNAGC	2 cut(s)	275, 303
BsaAI	YACGTR	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	486
BsaHI	GRCGYC	2 cut(s)	101, 464
BsaJI	CCNNGG	2 cut(s)	133, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	238
Bse8I	GATNNNNATC	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	133, 296
BseGI	GGATG	2 cut(s)	171, 431
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	294, 483
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	520
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	325, 394, 487
Bsp1720I	GCTNAGC	2 cut(s)	275, 303
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	295, 484
BspMI	ACCTGC	1 cut(s)	332
BspPI	GGATC	2 cut(s)	389, 482
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	133, 296
BssMI	GATC	3 cut(s)	325, 394, 487
BssNI	GRCGYC	2 cut(s)	101, 464
BssSI	CACGAG	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	133
Bst2BI	CACGAG	1 cut(s)	567
Bst6I	CTCTTC	2 cut(s)	216, 578
BstACI	GRCGYC	2 cut(s)	101, 464
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	338
BstDEI	CTNAG	4 cut(s)	275, 303, 319, 492
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	171, 431
BstHHI	GCGC	1 cut(s)	610
BstKTI	GATC	3 cut(s)	328, 397, 490
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	3 cut(s)	325, 394, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 542
BstV1I	GCAGC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	171, 431
BveI	ACCTGC	1 cut(s)	332
CfoI	GCGC	1 cut(s)	610
CseI	GACGC	1 cut(s)	453
CviAII	CATG	5 cut(s)	59, 96, 134, 379, 546
CviJI	RGCY	7 cut(s)	132, 228, 302, 391, 413, 615, 655
CviKI_1	RGCY	7 cut(s)	132, 228, 302, 391, 413, 615, 655
DdeI	CTNAG	4 cut(s)	275, 303, 319, 492
DpnI	GATC	3 cut(s)	327, 396, 489
DpnII	GATC	3 cut(s)	325, 394, 487
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	216, 578
EarI	CTCTTC	2 cut(s)	216, 578
Eco130I	CCWWGG	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	196
Eco72I	CACGTG	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	496
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	5 cut(s)	62, 99, 137, 382, 549
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	5 cut(s)	58, 95, 133, 378, 545
Fnu4HI	GCNGC	2 cut(s)	534, 653
FokI	GGATG	2 cut(s)	178, 438
Fsp4HI	GCNGC	2 cut(s)	534, 653
FspBI	CTAG	2 cut(s)	173, 243
GlaI	GCGC	1 cut(s)	609
GluI	GCNGC	2 cut(s)	534, 653
HaeIII	GGCC	1 cut(s)	132
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	1 cut(s)	610
Hin1I	GRCGYC	2 cut(s)	101, 464
Hin1II	CATG	5 cut(s)	62, 99, 137, 382, 549
Hin6I	GCGC	1 cut(s)	608
HinP1I	GCGC	1 cut(s)	608
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HpaI	GTTAAC	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	3 cut(s)	114, 491, 627
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	2 cut(s)	117, 242
HpyCH4IV	ACGT	2 cut(s)	101, 337
HpyCH4V	TGCA	9 cut(s)	29, 152, 335, 341, 361, 472, 536, 545, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 542
HpyF3I	CTNAG	4 cut(s)	275, 303, 319, 492
HpySE526I	ACGT	2 cut(s)	101, 337
Hsp92I	GRCGYC	2 cut(s)	101, 464
Hsp92II	CATG	5 cut(s)	62, 99, 137, 382, 549
HspAI	GCGC	1 cut(s)	608
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	325, 394, 487
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	9 cut(s)	99, 219, 327, 335, 405, 504, 525, 618, 640
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	4 cut(s)	40, 481, 534, 545
MaeI	CTAG	2 cut(s)	173, 243
MaeII	ACGT	2 cut(s)	101, 337
MaeIII	GTNAC	2 cut(s)	374, 447
MalI	GATC	3 cut(s)	327, 396, 489
MboI	GATC	3 cut(s)	325, 394, 487
MboII	GAAGA	3 cut(s)	59, 203, 595
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	4 cut(s)	42, 90, 147, 496
MluNI	TGGCCA	1 cut(s)	132
MnlI	CCTC	5 cut(s)	61, 70, 169, 306, 409
Mox20I	TGGCCA	1 cut(s)	132
Mph1103I	ATGCAT	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	3 cut(s)	387, 504, 661
MslI	CAYNNNNRTG	1 cut(s)	477
Msp20I	TGGCCA	1 cut(s)	132
MunI	CAATTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	59, 542
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	3 cut(s)	325, 394, 487
NlaIII	CATG	5 cut(s)	62, 99, 137, 382, 549
NmuCI	GTSAC	2 cut(s)	374, 447
NsiI	ATGCAT	1 cut(s)	474
PctI	GAATGC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	535, 654
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	338
PspCI	CACGTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	3 cut(s)	387, 504, 661
SatI	GCNGC	2 cut(s)	534, 653
Sau3AI	GATC	3 cut(s)	325, 394, 487
SetI	ASST	7 cut(s)	104, 190, 340, 346, 415, 437, 661
SfaNI	GCATC	4 cut(s)	40, 481, 534, 545
SmiMI	CAYNNNNRTG	1 cut(s)	477
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	4 cut(s)	42, 90, 147, 496
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	2 cut(s)	173, 243
StyI	CCWWGG	1 cut(s)	133
TaiI	ACGT	2 cut(s)	104, 340
TasI	AATT	4 cut(s)	42, 90, 147, 496
Tru1I	TTAA	3 cut(s)	387, 504, 661
Tru9I	TTAA	3 cut(s)	387, 504, 661
TseFI	GTSAC	2 cut(s)	374, 447
TseI	GCWGC	2 cut(s)	533, 652
Tsp45I	GTSAC	2 cut(s)	374, 447
TspDTI	ATGAA	2 cut(s)	84, 395
XapI	RAATTY	1 cut(s)	496
XspI	CTAG	2 cut(s)	173, 243
ZraI	GACGTC	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.