Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Forward (+)

30777395 .. 30778486

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1208200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGATCCCTGATTGCTTCAGCTTGGGTGGTGTGTTGAGAGCTTTAGCCGGAGGTAGTGGTCTTATGAAGGTGAGTCAAATACATGGATTCATCATGCAACTGGGTTTTGGTTCACACAAATCTTTAAGTGGATCCCTAATCGATGCATATGCAAAGTGTGGAAGGCTAGAGAGAGCTCATAAGATATACAGGAGCATGATAAAAAAGGACATTACATCTTGCACGGCACTGATAAATGGATATGCAAGAGAAGGTAACTACAGCGGCGATGTGCTAGACCTCTTTAAAGAAATAACTCTTACGTGCGTGGCACTTGACAGTGTCATATTATGCTCCATGCTTAATGTATGTGCGAAAGTTGCTTCACTGATCTTGGGAAGAAAAATCCATGCCCTTACTTTTAAACACCAACCTTGTCATGATGTGGCCATGGGAAATGCTCTCGTTGATATGTATGCAAAATGCGGAGAAATTGAAGATGCTAACCATGCTTCTGATGAGATGGAGGAAAAGAATGTTATTTCATGGACATCGATGATTTCTGGATATGGAAGGAATGGCTTGGGACATAAGGCAATTGCTTTATATAAAACGATGGAATATGAGGGATTGCAACCTAATGATATCACATTCTTGTCTCTTCTCTTTGCTTGTAGCCATGCTGGACTGACAGTCGAAGGATGGGAATGCTTCAATATTATGCTTAGAAAATACAACATCTCGCCTCGATCTGAGCATTTTTCTTGCATGGTAGACCTTTATGCACGTGCAGGTTTGTTAGACGAAGCTTACAAACTTATGTGTGATATGAACATAAAGCCTAATTCAGCAGTTTGGGGAGCCATTCTTGGGGCATGTAGCATCCATGGTAATAGCTTACTTGGAGAAGTGGTATCAATGCATCTTTGCGATATGGATCCAAAGAATTCAGTTAACTATGTTGTTCTAGGAAGCCTATATGCTGCATTTGGTGCATGGGACAATGCTTTGGAAACTCGAAATTTGATAGAGAATAGAAGTCTGAAAAAAGAACCAGCGCAGAGCCTTTTAGTATCCAAATCAAGTAAAACTGTGCTTTTGCATGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

364

Amino Acids

39.67

Weight (kDa)

6.88

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	171 - 219	2.8e-11	PPR repeat family
PPR	PF01535	174 - 204	1.4e-07	PPR repeat
E_motif	PF20431	291 - 347	1.4e-06	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	761
AccI	GTMKAC	1 cut(s)	753
AciI	CCGC	2 cut(s)	264, 465
AclWI	GGATC	4 cut(s)	126, 139, 911, 924
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	925, 1000
AcvI	CACGTG	1 cut(s)	767
AfiI	CCNNNNNNNGG	1 cut(s)	849
AgsI	TTSAA	2 cut(s)	476, 694
AhdI	GACNNNNNGTC	1 cut(s)	671
AluBI	AGCT	5 cut(s)	21, 41, 176, 788, 876
AluI	AGCT	5 cut(s)	21, 41, 176, 788, 876
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	642
AlwI	GGATC	4 cut(s)	126, 139, 911, 924
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	962
ApoI	RAATTY	2 cut(s)	925, 1000
AspLEI	GCGC	1 cut(s)	1039
AsuHPI	GGTGA	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	428
BamHI	GGATCC	2 cut(s)	131, 916
BanII	GRGCYC	1 cut(s)	178
BbrPI	CACGTG	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	949
BccI	CCATC	3 cut(s)	496, 589, 675
BceAI	ACGGC	1 cut(s)	240
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciVI	GTATCC	1 cut(s)	1063
BcoDI	GTCTC	1 cut(s)	642
BfaI	CTAG	3 cut(s)	167, 275, 947
BfmI	CTRYAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	761
BfuI	GTATCC	1 cut(s)	1063
BisI	GCNGC	2 cut(s)	265, 963
BlsI	GCNGC	2 cut(s)	266, 964
BmeRI	GACNNNNNGTC	1 cut(s)	671
BmiI	GGNNCC	3 cut(s)	133, 841, 918
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	4 cut(s)	133, 469, 870, 910
BmuI	ACTGGG	1 cut(s)	110
Bsa29I	ATCGAT	2 cut(s)	141, 533
BsaAI	YACGTR	2 cut(s)	303, 767
BsaBI	GATNNNNATC	1 cut(s)	915
BsaJI	CCNNGG	2 cut(s)	429, 865
BsaXI	ACNNNNNCTCC	2 cut(s)	876, 906
Bsc4I	CCNNNNNNNGG	1 cut(s)	849
Bse1I	ACTGG	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	915
BseCI	ATCGAT	2 cut(s)	141, 533
BseDI	CCNNGG	2 cut(s)	429, 865
BseGI	GGATG	2 cut(s)	686, 861
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	1 cut(s)	849
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	949
BsgI	GTGCAG	1 cut(s)	789
BshFI	GGCC	1 cut(s)	428
BshVI	ATCGAT	2 cut(s)	141, 533
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	579, 992
BslI	CCNNNNNNNGG	1 cut(s)	849
BsmAI	GTCTC	1 cut(s)	642
BsmFI	GGGAC	2 cut(s)	579, 992
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	5 cut(s)	3, 131, 369, 728, 916
Bsp19I	CCATGG	2 cut(s)	429, 865
BspACI	CCGC	2 cut(s)	264, 465
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	1 cut(s)	724
BspDI	ATCGAT	2 cut(s)	141, 533
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	133, 841, 918
BspMI	ACCTGC	1 cut(s)	761
BspPI	GGATC	4 cut(s)	126, 139, 911, 924
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	429, 865
BssMI	GATC	5 cut(s)	3, 131, 369, 728, 916
BssT1I	CCWWGG	2 cut(s)	429, 865
Bst4CI	ACNGT	3 cut(s)	320, 673, 1072
Bst6I	CTCTTC	1 cut(s)	645
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstBAI	YACGTR	2 cut(s)	303, 767
BstC8I	GCNNGC	1 cut(s)	1083
BstDEI	CTNAG	2 cut(s)	704, 732
BstDSI	CCRYGG	2 cut(s)	429, 865
BstF5I	GGATG	2 cut(s)	686, 861
BstHHI	GCGC	1 cut(s)	1039
BstKTI	GATC	5 cut(s)	6, 134, 372, 731, 919
BstMAI	GTCTC	1 cut(s)	642
BstMBI	GATC	5 cut(s)	3, 131, 369, 728, 916
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 488, 971
BstNSI	RCATGY	2 cut(s)	858, 1085
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	949
BstX2I	RGATCY	2 cut(s)	131, 916
BstYI	RGATCY	2 cut(s)	131, 916
Bsu15I	ATCGAT	2 cut(s)	141, 533
BsuI	GTATCC	1 cut(s)	1063
BsuRI	GGCC	1 cut(s)	428
BsuTUI	ATCGAT	2 cut(s)	141, 533
BtgI	CCRYGG	2 cut(s)	429, 865
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	686, 861
BtsIMutI	CAGTG	3 cut(s)	227, 325, 365
BveI	ACCTGC	1 cut(s)	761
Cac8I	GCNNGC	1 cut(s)	1083
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	1039
ClaI	ATCGAT	2 cut(s)	141, 533
DdeI	CTNAG	2 cut(s)	704, 732
DpnI	GATC	5 cut(s)	5, 133, 371, 730, 918
DpnII	GATC	5 cut(s)	3, 131, 369, 728, 916
DraI	TTTAAA	2 cut(s)	286, 403
DriI	GACNNNNNGTC	1 cut(s)	671
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	645
Eam1105I	GACNNNNNGTC	1 cut(s)	671
EarI	CTCTTC	1 cut(s)	645
Ecl136II	GAGCTC	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	429, 865
Eco24I	GRGCYC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	625
Eco53kI	GAGCTC	1 cut(s)	176
Eco72I	CACGTG	1 cut(s)	767
EcoICRI	GAGCTC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	925
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	2 cut(s)	429, 865
EcoT22I	ATGCAT	2 cut(s)	148, 903
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	429, 865
FaqI	GGGAC	2 cut(s)	579, 992
FauNDI	CATATG	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	753
Fnu4HI	GCNGC	2 cut(s)	265, 963
FokI	GGATG	2 cut(s)	693, 848
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	265, 963
FspBI	CTAG	3 cut(s)	167, 275, 947
GlaI	GCGC	1 cut(s)	1038
GluI	GCNGC	2 cut(s)	265, 963
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	1039
Hin6I	GCGC	1 cut(s)	1037
HinP1I	GCGC	1 cut(s)	1037
HincII	GTYRAC	1 cut(s)	934
HindII	GTYRAC	1 cut(s)	934
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	2 cut(s)	73, 87
HpaI	GTTAAC	1 cut(s)	934
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	3 cut(s)	113, 754, 934
Hpy188I	TCNGA	3 cut(s)	496, 733, 1023
Hpy188III	TCNNGA	2 cut(s)	419, 543
Hpy8I	GTNNAC	3 cut(s)	113, 754, 934
HpyAV	CCTTC	5 cut(s)	61, 156, 245, 546, 671
HpyCH4III	ACNGT	3 cut(s)	320, 673, 1072
HpyCH4IV	ACGT	2 cut(s)	302, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 488, 971
HpyF3I	CTNAG	2 cut(s)	704, 732
HpySE526I	ACGT	2 cut(s)	302, 766
HspAI	GCGC	1 cut(s)	1037
KspAI	GTTAAC	1 cut(s)	934
Kzo9I	GATC	5 cut(s)	3, 131, 369, 728, 916
LmnI	GCTCC	3 cut(s)	192, 338, 839
LpnPI	CCDG	8 cut(s)	21, 61, 86, 175, 528, 648, 756, 1047
Lsp1109I	GCAGC	1 cut(s)	949
LweI	GCATC	4 cut(s)	133, 469, 870, 910
MaeI	CTAG	3 cut(s)	167, 275, 947
MaeII	ACGT	2 cut(s)	302, 766
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	5 cut(s)	5, 133, 371, 730, 918
MboI	GATC	5 cut(s)	3, 131, 369, 728, 916
MboII	GAAGA	3 cut(s)	390, 488, 632
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	2 cut(s)	131, 916
MhlI	GDGCHC	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	5 cut(s)	471, 576, 823, 925, 1000
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	5 cut(s)	44, 290, 499, 598, 735
Mox20I	TGGCCA	1 cut(s)	428
Mph1103I	ATGCAT	2 cut(s)	148, 903
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	6 cut(s)	125, 285, 342, 402, 933, 1090
Msp20I	TGGCCA	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	692
MwoI	GCNNNNNNNGC	3 cut(s)	359, 488, 971
NcoI	CCATGG	2 cut(s)	429, 865
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	5 cut(s)	3, 131, 369, 728, 916
NlaIV	GGNNCC	3 cut(s)	133, 841, 918
NsiI	ATGCAT	2 cut(s)	148, 903
NspI	RCATGY	2 cut(s)	858, 1085
PaeI	GCATGC	1 cut(s)	1085
PagI	TCATGA	1 cut(s)	418
PctI	GAATGC	1 cut(s)	692
PfeI	GAWTC	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	266, 964
PleI	GAGTC	1 cut(s)	81
PmaCI	CACGTG	1 cut(s)	767
PmlI	CACGTG	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	81
Ppu21I	YACGTR	2 cut(s)	303, 767
Psp124BI	GAGCTC	1 cut(s)	178
PspCI	CACGTG	1 cut(s)	767
PspN4I	GGNNCC	3 cut(s)	133, 841, 918
PsuI	RGATCY	2 cut(s)	131, 916
PsyI	GACNNNGTC	1 cut(s)	320
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	6 cut(s)	125, 285, 342, 402, 933, 1090
SatI	GCNGC	2 cut(s)	265, 963
Sau3AI	GATC	5 cut(s)	3, 131, 369, 728, 916
SchI	GAGTC	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	4 cut(s)	133, 469, 870, 910
SfcI	CTRYAG	1 cut(s)	259
SphI	GCATGC	1 cut(s)	1085
Sse9I	AATT	5 cut(s)	471, 576, 823, 925, 1000
SsiI	CCGC	2 cut(s)	264, 465
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	3 cut(s)	167, 275, 947
SstI	GAGCTC	1 cut(s)	178
StyI	CCWWGG	2 cut(s)	429, 865
TaaI	ACNGT	3 cut(s)	320, 673, 1072
TaiI	ACGT	2 cut(s)	305, 769
TaqI	TCGA	5 cut(s)	141, 533, 675, 727, 997
TasI	AATT	5 cut(s)	471, 576, 823, 925, 1000
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	6 cut(s)	125, 285, 342, 402, 933, 1090
Tru9I	TTAA	6 cut(s)	125, 285, 342, 402, 933, 1090
TscAI	CASTG	3 cut(s)	234, 325, 372
TseI	GCWGC	1 cut(s)	962
TspDTI	ATGAA	4 cut(s)	79, 80, 513, 824
TspRI	CASTG	3 cut(s)	234, 325, 372
Tth111I	GACNNNGTC	1 cut(s)	320
XapI	RAATTY	2 cut(s)	925, 1000
XceI	RCATGY	2 cut(s)	858, 1085
XmiI	GTMKAC	1 cut(s)	753
XspI	CTAG	3 cut(s)	167, 275, 947
Zsp2I	ATGCAT	2 cut(s)	148, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.