Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009744.1

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Forward (+)

28861 .. 29625

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009744.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgatgtcacacataatgcaagcattgtggaaaaggagtcaccttcaagaagctccgagacttgttcagtctaacccaactcacttggaccattactattgcttgtatatgaagattctgcaactctgcatcgatcaacgagtagaaagacccggtcttttggctcacacccatgtgatcacaaatgggtttgcttcaaatctgaatttgaacaccaaattgatcaacttttactgcaaatttggccgcgtggtcagtgctcgcaaggtgttcgataaaatgcctgagagaaatgttgtgtcttggacctctatggtttctgggtatgctcaaagtggaagctatgagaaagctttggaggtgtttttggaaatgcgtcgggcgggtttcagagctaatcagtttgggtatggaagtgcattgaggtcgtgcactggtttgaggtctttggaagtaggaatgcagatacaggggtgtcttgtgaaaggaaggtttgctgagaatttgtttgtgctgagtgcattagttgattttcatgccaagtgtggaaagatagaggatgcttgttgtgttttcgaggcactgtcggaattcaatgtgaatatggccaattggatttttctttttccgtgtgctgtgctcagtgaattgatcttattatacatcctcctggtaaacattctcactctcttagcttctcttccttcatgtgtttatattgtttgtaattttgaaccagcaggagacactcatcaactcgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

254

Amino Acids

28.72

Weight (kDa)

8.47

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	249
AciI	CCGC	2 cut(s)	247, 383
AcoI	YGGCCR	2 cut(s)	244, 606
AcsI	RAATTY	4 cut(s)	205, 239, 502, 590
AgsI	TTSAA	5 cut(s)	47, 198, 211, 595, 734
AjnI	CCWGG	1 cut(s)	669
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	5 cut(s)	53, 342, 353, 395, 695
AluI	AGCT	5 cut(s)	53, 342, 353, 395, 695
Alw21I	GWGCWC	3 cut(s)	262, 434, 642
Alw26I	GTCTC	2 cut(s)	52, 738
Alw44I	GTGCAC	1 cut(s)	430
AoxI	GGCC	2 cut(s)	244, 606
ApaLI	GTGCAC	1 cut(s)	430
ApoI	RAATTY	4 cut(s)	205, 239, 502, 590
AspS9I	GGNCC	2 cut(s)	88, 306
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	88, 306
BaeGI	GKGCMC	1 cut(s)	434
BaeI	ACNNNNGTAYC	2 cut(s)	458, 491
BalI	TGGCCA	1 cut(s)	608
BauI	CACGAG	1 cut(s)	758
Bbv12I	GWGCWC	3 cut(s)	262, 434, 642
BcgI	CGANNNNNNTGC	4 cut(s)	253, 287, 408, 442
BciT130I	CCWGG	1 cut(s)	671
BclI	TGATCA	2 cut(s)	177, 222
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	52, 738
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	2 cut(s)	153, 671
Bme18I	GGWCC	2 cut(s)	88, 306
BmgT120I	GGNCC	2 cut(s)	88, 306
BmrFI	CCNGG	2 cut(s)	153, 671
BmsI	GCATC	2 cut(s)	138, 550
BpuMI	CCSGG	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	671
BseCI	ATCGAT	1 cut(s)	132
BseGI	GGATG	2 cut(s)	565, 663
BseMII	CTCAG	4 cut(s)	276, 489, 506, 655
BseNI	ACTGG	1 cut(s)	439
BseSI	GKGCMC	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	246, 608
BshVI	ATCGAT	1 cut(s)	132
BsiHKAI	GWGCWC	3 cut(s)	262, 434, 642
BsiSI	CCGG	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	52, 738
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	246, 608
Bsp1286I	GDGCHC	3 cut(s)	262, 434, 642
Bsp143I	GATC	4 cut(s)	133, 177, 222, 651
BspACI	CCGC	2 cut(s)	247, 383
BspANI	GGCC	2 cut(s)	246, 608
BspCNI	CTCAG	4 cut(s)	277, 490, 507, 654
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	439
BssMI	GATC	4 cut(s)	133, 177, 222, 651
BssSI	CACGAG	1 cut(s)	758
Bst2BI	CACGAG	1 cut(s)	758
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	1 cut(s)	585
Bst6I	CTCTTC	1 cut(s)	705
BstC8I	GCNNGC	2 cut(s)	21, 262
BstDEI	CTNAG	5 cut(s)	285, 498, 515, 641, 691
BstF5I	GGATG	2 cut(s)	565, 663
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	4 cut(s)	136, 180, 225, 654
BstMAI	GTCTC	2 cut(s)	52, 738
BstMBI	GATC	4 cut(s)	133, 177, 222, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	1 cut(s)	671
BstSCI	CCNGG	2 cut(s)	151, 669
BstSLI	GKGCMC	1 cut(s)	434
BstUI	CGCG	1 cut(s)	249
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	246, 608
BsuTUI	ATCGAT	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	565, 663
BtsIMutI	CAGTG	4 cut(s)	262, 432, 581, 649
Cac8I	GCNNGC	2 cut(s)	21, 262
Cfr13I	GGNCC	2 cut(s)	88, 306
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	1 cut(s)	365
CspCI	CAANNNNNGTGG	2 cut(s)	8, 43
CviAII	CATG	3 cut(s)	173, 536, 708
CviJI	RGCY	8 cut(s)	53, 164, 246, 342, 353, 395, 608, 695
CviKI_1	RGCY	8 cut(s)	53, 164, 246, 342, 353, 395, 608, 695
DdeI	CTNAG	5 cut(s)	285, 498, 515, 641, 691
DpnI	GATC	4 cut(s)	135, 179, 224, 653
DpnII	GATC	4 cut(s)	133, 177, 222, 651
EaeI	YGGCCR	2 cut(s)	244, 606
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Eco47I	GGWCC	2 cut(s)	88, 306
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	669
FaeI	CATG	3 cut(s)	176, 539, 711
FatI	CATG	3 cut(s)	172, 535, 707
FauI	CCCGC	1 cut(s)	376
FbaI	TGATCA	2 cut(s)	177, 222
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	2 cut(s)	572, 650
Fsp4HI	GCNGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	246, 608
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	365
Hin1II	CATG	3 cut(s)	176, 539, 711
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	2 cut(s)	37, 115
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	432, 676
Hpy188I	TCNGA	4 cut(s)	57, 204, 392, 589
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	2 cut(s)	432, 676
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	3 cut(s)	53, 483, 714
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4V	TGCA	8 cut(s)	19, 121, 129, 237, 419, 432, 463, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	5 cut(s)	285, 498, 515, 641, 691
Hsp92II	CATG	3 cut(s)	176, 539, 711
Ksp22I	TGATCA	2 cut(s)	177, 222
Kzo9I	GATC	4 cut(s)	133, 177, 222, 651
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	9 cut(s)	166, 297, 306, 420, 455, 656, 683, 726, 750
LweI	GCATC	2 cut(s)	138, 550
MaeIII	GTNAC	2 cut(s)	6, 38
MalI	GATC	4 cut(s)	135, 179, 224, 653
MboI	GATC	4 cut(s)	133, 177, 222, 651
MboII	GAAGA	2 cut(s)	124, 692
MfeI	CAATTG	1 cut(s)	610
MhlI	GDGCHC	3 cut(s)	262, 434, 642
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	8 cut(s)	205, 218, 239, 502, 590, 610, 647, 727
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	7 cut(s)	319, 352, 417, 435, 550, 571, 677
Mox20I	TGGCCA	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	608
MslI	CAYNNNNRTG	2 cut(s)	171, 173
Msp20I	TGGCCA	1 cut(s)	608
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	153, 671
MunI	CAATTG	1 cut(s)	610
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	671
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	243
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	4 cut(s)	133, 177, 222, 651
NlaIII	CATG	3 cut(s)	176, 539, 711
NmuCI	GTSAC	2 cut(s)	6, 38
OliI	CACNNNNGTG	1 cut(s)	173
PctI	GAATGC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	115
PflFI	GACNNNGTC	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	248
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	669
PspPI	GGNCC	2 cut(s)	88, 306
PsyI	GACNNNGTC	1 cut(s)	153
RseI	CAYNNNNRTG	2 cut(s)	171, 173
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	4 cut(s)	133, 177, 222, 651
Sau96I	GGNCC	2 cut(s)	88, 306
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	153, 671
SduI	GDGCHC	3 cut(s)	262, 434, 642
SfaNI	GCATC	2 cut(s)	138, 550
SinI	GGWCC	2 cut(s)	88, 306
SmiMI	CAYNNNNRTG	2 cut(s)	171, 173
Sse9I	AATT	8 cut(s)	205, 218, 239, 502, 590, 610, 647, 727
SsiI	CCGC	2 cut(s)	247, 383
StyD4I	CCNGG	2 cut(s)	151, 669
TaaI	ACNGT	1 cut(s)	585
TaqI	TCGA	3 cut(s)	132, 273, 576
TasI	AATT	8 cut(s)	205, 218, 239, 502, 590, 610, 647, 727
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	115
TscAI	CASTG	4 cut(s)	262, 439, 588, 649
TseFI	GTSAC	2 cut(s)	6, 38
Tsp45I	GTSAC	2 cut(s)	6, 38
TspDTI	ATGAA	3 cut(s)	125, 524, 696
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	4 cut(s)	262, 439, 588, 649
Tth111I	GACNNNGTC	1 cut(s)	153
VneI	GTGCAC	1 cut(s)	430
VpaK11BI	GGWCC	2 cut(s)	88, 306
XapI	RAATTY	4 cut(s)	205, 239, 502, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.