Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8370541.1

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Reverse (-)

446 .. 1108

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8370541.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgggaaatgctcttgttgatatgtatgcaaaatgtggagagattgaagatgctaaccatgcttttgaggagatggaggaaaagaatgtaatttcatggacgtctctgatttctggatatggaaggaacggccatggagataaagcaattgcattgtataaaaggatggaacttgagggattgaaacctaatgatatcacattcttatctattctctttgcttgtagccatactggattgacaagtgaaggatgggaatgcttcaatactatgcttcgcaaatacaacatcttgcctcgggctgagcatttttcttgcttagtagatctttatgcacgtgcaggtttgctggaagatgtgcatgagttgatatgtgacatgaacattaagcctgatccctcactttggggagctgttcttgggggatgtaacacctatggtaataagtcacttggagaagtggcatcaatgcatctttgtgatattgatcctgagaattcagttaactatgttgttcttggaagcatctatgctgcatctggtgcatgggacaatgctttggaaacacgagatttgttagagaagagaagtttgaaaaaagaaccagcgcgcagccttatacattccacaacaaataatatgttgcttttgcagccaccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

220

Amino Acids

24.42

Weight (kDa)

5.05

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	332
AccII	CGCG	1 cut(s)	610
AclWI	GGATC	2 cut(s)	389, 482
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	496
AcvI	CACGTG	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	405
AgsI	TTSAA	4 cut(s)	47, 184, 265, 595
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	2 cut(s)	389, 482
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	533, 612, 652
ApoI	RAATTY	1 cut(s)	496
AspLEI	GCGC	2 cut(s)	610, 612
AvaI	CYCGRG	1 cut(s)	297
BauI	CACGAG	1 cut(s)	567
BbrPI	CACGTG	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	520, 624
BccI	CCATC	3 cut(s)	67, 160, 246
BceAI	ACGGC	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	332
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	3 cut(s)	534, 613, 653
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	3 cut(s)	535, 614, 654
BmeT110I	CYCGRG	1 cut(s)	297
BmsI	GCATC	5 cut(s)	40, 473, 481, 534, 545
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	133, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	238
Bse8I	GATNNNNATC	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	133, 296
BseGI	GGATG	3 cut(s)	171, 257, 431
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	294, 483
BseNI	ACTGG	1 cut(s)	238
BsePI	GCGCGC	1 cut(s)	608
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	520, 624
BsgI	GTGCAG	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	325, 394, 487
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	133
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	295, 484
BspFNI	CGCG	1 cut(s)	610
BspMI	ACCTGC	1 cut(s)	332
BspPI	GGATC	2 cut(s)	389, 482
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	133, 296
BssHII	GCGCGC	1 cut(s)	608
BssMI	GATC	3 cut(s)	325, 394, 487
BssNI	GRCGYC	1 cut(s)	101
BssSI	CACGAG	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	133
Bst2BI	CACGAG	1 cut(s)	567
Bst6I	CTCTTC	1 cut(s)	578
BstACI	GRCGYC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	3 cut(s)	303, 319, 492
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	3 cut(s)	171, 257, 431
BstFNI	CGCG	1 cut(s)	610
BstHHI	GCGC	2 cut(s)	610, 612
BstKTI	GATC	3 cut(s)	328, 397, 490
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	3 cut(s)	325, 394, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 542, 652
BstUI	CGCG	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	520, 624
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	171, 257, 431
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	610
CfoI	GCGC	2 cut(s)	610, 612
CviAII	CATG	6 cut(s)	59, 96, 134, 362, 379, 546
CviJI	RGCY	7 cut(s)	132, 228, 302, 391, 413, 615, 655
CviKI_1	RGCY	7 cut(s)	132, 228, 302, 391, 413, 615, 655
DdeI	CTNAG	3 cut(s)	303, 319, 492
DpnI	GATC	3 cut(s)	327, 396, 489
DpnII	GATC	3 cut(s)	325, 394, 487
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	196
Eco72I	CACGTG	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	496
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	6 cut(s)	62, 99, 137, 365, 382, 549
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	6 cut(s)	58, 95, 133, 361, 378, 545
Fnu4HI	GCNGC	3 cut(s)	534, 613, 653
FokI	GGATG	3 cut(s)	178, 264, 438
Fsp4HI	GCNGC	3 cut(s)	534, 613, 653
GlaI	GCGC	2 cut(s)	609, 611
GluI	GCNGC	3 cut(s)	534, 613, 653
HaeIII	GGCC	1 cut(s)	132
HhaI	GCGC	2 cut(s)	610, 612
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	6 cut(s)	62, 99, 137, 365, 382, 549
Hin6I	GCGC	2 cut(s)	608, 610
HinP1I	GCGC	2 cut(s)	608, 610
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HpaI	GTTAAC	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	2 cut(s)	114, 491
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	2 cut(s)	117, 242
HpyCH4IV	ACGT	2 cut(s)	101, 337
HpyCH4V	TGCA	9 cut(s)	29, 152, 335, 341, 361, 472, 536, 545, 652
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 542, 652
HpyF3I	CTNAG	3 cut(s)	303, 319, 492
HpySE526I	ACGT	2 cut(s)	101, 337
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	6 cut(s)	62, 99, 137, 365, 382, 549
HspAI	GCGC	2 cut(s)	608, 610
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	325, 394, 487
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	8 cut(s)	99, 219, 327, 335, 405, 504, 525, 618
Lsp1109I	GCAGC	2 cut(s)	520, 624
LweI	GCATC	5 cut(s)	40, 473, 481, 534, 545
MaeII	ACGT	2 cut(s)	101, 337
MaeIII	GTNAC	3 cut(s)	374, 428, 447
MalI	GATC	3 cut(s)	327, 396, 489
MboI	GATC	3 cut(s)	325, 394, 487
MboII	GAAGA	3 cut(s)	59, 365, 595
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	3 cut(s)	90, 147, 496
MnlI	CCTC	5 cut(s)	61, 70, 169, 306, 409
Mph1103I	ATGCAT	1 cut(s)	474
MseI	TTAA	3 cut(s)	387, 504, 661
MslI	CAYNNNNRTG	1 cut(s)	477
MunI	CAATTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	263
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	3 cut(s)	59, 542, 652
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	3 cut(s)	325, 394, 487
NlaIII	CATG	6 cut(s)	62, 99, 137, 365, 382, 549
NmuCI	GTSAC	2 cut(s)	374, 447
NsiI	ATGCAT	1 cut(s)	474
PauI	GCGCGC	1 cut(s)	608
PctI	GAATGC	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	535, 614, 654
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	338
PspCI	CACGTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	325
PteI	GCGCGC	1 cut(s)	608
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	3 cut(s)	387, 504, 661
SatI	GCNGC	3 cut(s)	534, 613, 653
Sau3AI	GATC	3 cut(s)	325, 394, 487
SetI	ASST	7 cut(s)	104, 190, 340, 346, 415, 437, 661
SfaNI	GCATC	5 cut(s)	40, 473, 481, 534, 545
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	90, 147, 496
StyI	CCWWGG	1 cut(s)	133
TaiI	ACGT	2 cut(s)	104, 340
TasI	AATT	3 cut(s)	90, 147, 496
Tru1I	TTAA	3 cut(s)	387, 504, 661
Tru9I	TTAA	3 cut(s)	387, 504, 661
TseFI	GTSAC	2 cut(s)	374, 447
TseI	GCWGC	3 cut(s)	533, 612, 652
Tsp45I	GTSAC	2 cut(s)	374, 447
TspDTI	ATGAA	2 cut(s)	84, 395
XapI	RAATTY	1 cut(s)	496
ZraI	GACGTC	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.