Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Forward (+)

23701655 .. 23702155

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATGGAATATGAGGGATTCAAACCTAATGATATCACATTCCTGTCTCTTCTCTTTGCTTGTAGCCATGCTGGACTGACAGTTGAAGGATGGGAATGCTTCAGTACTATGCTTGAAAAGTACAACATCTTGCCTCGAGTTGAGCATTTTTCTTGCTTGGTAGACCTTTATGCACGTGCAGGTTTGTTAGACGAAGCTTACAAGCTGATGTGTGACATGAACATAAAGCCTAATTCCTCACTCTGGGGAGCCATTCTTGGCGGGTGTAGCATCCATGGTAATAGCTCACTTGGAGAAGTGGCGGCAATGCATCTTCGTGATATGGATCCAAAGAATTCAGTTAACTTTGTTGTCCTAGGAAGCATGTATGCTGCATCTGGTGCATGGGACAATGCTTTGGAAACGCGAAATTTGATAGAGAAGAGAAGTTTGAAAAAAGAACCAGCACAGAGCGTTTTAGTTACCACAACAAATAAAACTGTGCTTTTGCAGCCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

167

Amino Acids

18.37

Weight (kDa)

5.53

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	92 - 151	4e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	406
AciI	CCGC	2 cut(s)	261, 302
AclWI	GGATC	2 cut(s)	320, 333
AcsI	RAATTY	2 cut(s)	334, 409
AcuI	CTGAAG	1 cut(s)	85
AcvI	CACGTG	1 cut(s)	176
AfaI	GTAC	2 cut(s)	106, 122
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	4 cut(s)	22, 86, 116, 433
AluBI	AGCT	3 cut(s)	197, 205, 285
AluI	AGCT	3 cut(s)	197, 205, 285
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	320, 333
Ama87I	CYCGRG	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	371, 490
ApoI	RAATTY	2 cut(s)	334, 409
AspA2I	CCTAGG	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	135
AvrII	CCTAGG	1 cut(s)	355
BamHI	GGATCC	1 cut(s)	325
BbrPI	CACGTG	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	303, 372, 491
BlnI	CCTAGG	1 cut(s)	355
BlsI	GCNGC	3 cut(s)	304, 373, 492
BmcAI	AGTACT	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	250, 327
BmsI	GCATC	3 cut(s)	279, 319, 383
BsaAI	YACGTR	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	274, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	274, 355
BseGI	GGATG	2 cut(s)	95, 270
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	312
BseXI	GCAGC	1 cut(s)	358
BsgI	GTGCAG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	325
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	2 cut(s)	261, 302
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	250, 327
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	320, 333
BsrDI	GCAATG	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	274, 355
BssMI	GATC	1 cut(s)	325
BssT1I	CCWWGG	2 cut(s)	274, 355
Bst4CI	ACNGT	2 cut(s)	82, 481
Bst6I	CTCTTC	2 cut(s)	54, 416
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstBAI	YACGTR	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	2 cut(s)	95, 270
BstFNI	CGCG	1 cut(s)	406
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	3 cut(s)	267, 380, 490
BstNSI	RCATGY	1 cut(s)	367
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	95, 270
BveI	ACCTGC	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	105, 121
CviAII	CATG	5 cut(s)	68, 217, 275, 364, 384
CviJI	RGCY	7 cut(s)	66, 197, 205, 229, 251, 285, 493
CviKI_1	RGCY	7 cut(s)	66, 197, 205, 229, 251, 285, 493
CviQI	GTAC	2 cut(s)	105, 121
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	54, 416
EarI	CTCTTC	2 cut(s)	54, 416
Eco130I	CCWWGG	2 cut(s)	274, 355
Eco32I	GATATC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	85
Eco72I	CACGTG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	274, 355
EcoT22I	ATGCAT	1 cut(s)	312
ErhI	CCWWGG	2 cut(s)	274, 355
FaeI	CATG	5 cut(s)	71, 220, 278, 367, 387
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	5 cut(s)	67, 216, 274, 363, 383
FauI	CCCGC	1 cut(s)	254
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	303, 372, 491
FokI	GGATG	2 cut(s)	102, 257
Fsp4HI	GCNGC	3 cut(s)	303, 372, 491
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	3 cut(s)	303, 372, 491
Hin1II	CATG	5 cut(s)	71, 220, 278, 367, 387
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	1 cut(s)	18
HpaI	GTTAAC	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	163, 343
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	2 cut(s)	163, 343
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	2 cut(s)	82, 481
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	6 cut(s)	173, 179, 310, 374, 383, 490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	267, 380, 490
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	5 cut(s)	71, 220, 278, 367, 387
KspAI	GTTAAC	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	6 cut(s)	56, 57, 165, 229, 363, 456
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	3 cut(s)	279, 319, 383
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	212, 460
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	3 cut(s)	41, 305, 433
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	3 cut(s)	232, 334, 409
MnlI	CCTC	3 cut(s)	7, 144, 247
Mph1103I	ATGCAT	1 cut(s)	312
MseI	TTAA	2 cut(s)	342, 499
MslI	CAYNNNNRTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	101
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	3 cut(s)	267, 380, 490
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	5 cut(s)	71, 220, 278, 367, 387
NlaIV	GGNNCC	2 cut(s)	250, 327
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	312
NspI	RCATGY	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	135
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	304, 373, 492
PmaCI	CACGTG	1 cut(s)	176
PmlI	CACGTG	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	176
PspCI	CACGTG	1 cut(s)	176
PspN4I	GGNNCC	2 cut(s)	250, 327
PspXI	VCTCGAGB	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	106, 122
RsaNI	GTAC	2 cut(s)	105, 121
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	342, 499
SatI	GCNGC	3 cut(s)	303, 372, 491
Sau3AI	GATC	1 cut(s)	325
ScaI	AGTACT	1 cut(s)	106
SetI	ASST	7 cut(s)	28, 168, 178, 184, 199, 207, 287
SfaNI	GCATC	3 cut(s)	279, 319, 383
Sfr274I	CTCGAG	1 cut(s)	135
SlaI	CTCGAG	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	3 cut(s)	232, 334, 409
SsiI	CCGC	2 cut(s)	261, 302
SspMI	CTAG	1 cut(s)	356
StyI	CCWWGG	2 cut(s)	274, 355
TaaI	ACNGT	2 cut(s)	82, 481
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	136
TasI	AATT	3 cut(s)	232, 334, 409
TatI	WGTACW	2 cut(s)	104, 120
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	342, 499
Tru9I	TTAA	2 cut(s)	342, 499
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	2 cut(s)	371, 490
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	233
XapI	RAATTY	2 cut(s)	334, 409
XceI	RCATGY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	135
XmaJI	CCTAGG	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	356
ZrmI	AGTACT	1 cut(s)	106
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.