Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005777

Physical Location & Seq

Genomic Coordinates Reverse (-)

19067082 .. 19068272

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGTTCCTGATTGCTTCACCTTCGGGAGTGTTTTGAGAGGCTTGGCCGGAGATAGTGGTTTGGTGAAGGTTAGTCAAATGCATGGATTGACAATGCGTCTGGGTTTTGGATCACACAAAAGTTTGAGTGGATCGCTAATCAATGCATATGCAAAATGTGGCAAGGTAGTGTTTGCCCATAAGATATACAGAAGTATGATAGAAAAGGACATTATATCCTGCACTGCACTCATTGCTGGGTATGCACGAGAAGGTAACTACAGCAGAGATGTGCTAGATCTCTTCAAAGAGATAACAGTTATGAGCATGAGACTGGATGGTGTCATATTGTGCTCCATGCTTAATATATGTGCAAATGTTGCTTCATTGATCTTGGGAAGACAAATCCATGCACTTATGTTGAAGCACCAACCTTGTCTTGATGTGGCCATGGGAAATGCTCTCGTTGATATGTATGCAAAATGTGGAGAAATTGAAGATGCTAACCGTGCTTTTGAGGAGATGGAGGAAAAGAATGTAATTTCATGGACGTCTCTGATTTCTGGATATGGAAGGAATGGCCATGGAGATAAAGCAATTGCATTGTATAAAAGGATGGAACTTGAGGGATTGAAACCTAATGATATCACATTCTTGTCTCTTCTCTTTGCTTGTAGCCATACTGGATTGACAAGTGAAGGATGGGAATGCTTCAATACTATGCTTAGCAAATACAACATCTTGCCTCGGGCTGAGCATTTTTCTTGCTTGCTAGATCTTTATGCACGTGCAGGTTTGCTGGAAGATGTGCATAAGTTGATATGTGACATGAACATTAAGTCGAATCCCTCACTTTGGGGAGCTGTTCTTGGGGGATGTAGCACCTATGGTAATAGGTCACTTGGAGAAGTGGCATCAATGCATCTTTGTAATATTGATCTTGAGTATTCAGTTAACTATGTTGTTCTTGGAAGCATCTATGCTGCATCTGGTGCATGGGACAGTGCTTTGGAAACACGAGATTTGTTAGAGAAGGGAGGTTTGAAAAAAGAACCAGCGCACAGCCTTTTACAGTTCACAACAAATAAAATGTTGCTTTTGCAGCCACCTCAAGACAGTAAAACAGTAAAACTAGCTAATTATCACACTGATCATGTGGATCTCTTGCTTATGCTCCAAGAGTCCATTTATCTCGTTTTACTTTTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

396

Amino Acids

43.61

Weight (kDa)

6.23

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	171 - 219	3e-12	PPR repeat family
PPR	PF01535	174 - 204	2.3e-08	PPR repeat
E_motif	PF20431	289 - 349	2.4e-06	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20730
fragaria_vesca	FvH4_3g15060 FvH4_3g15060
malus_domestica	MD05G1227700.v1.1 MD10G1208100.v1.1 MD10G1208200.v1.1
prunus_persica	Prupe.4G134800_v2.0.a1
pyrus_communis	pycom05g20980 pycom05g20990 pycom10g17710
rosa_chinensis	RchiOBHm_Chr5g0024821 RchiOBHm_Chr5g0024861
rosa_laevigata	RLG00000032817
rosa_multiflora	Rmu_co8198802.1_g000001 Rmu_co8370541.1_g000001 Rmu_sc0009744.1_g000006 Rmu_sc0009744.1_g000007
rosa_roxburghii	Rroxscaffold_1G00054560
rosa_rugosa	Rorug05G0084700.1
rosa_samantha	Rh5AG176500 Rh5AG176600 Rh5BG174200 Rh5CG191200 Rh5CG191300 Rh5CG191500 Rh5DG175800 Rh5DG176000
rosa_wichuraiana	Rw5G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	761
AclWI	GGATC	3 cut(s)	118, 139, 1146
AcoI	YGGCCR	3 cut(s)	45, 426, 559
AcvI	CACGTG	1 cut(s)	767
AcyI	GRCGYC	1 cut(s)	530
AfiI	CCNNNNNNNGG	1 cut(s)	834
AgsI	TTSAA	6 cut(s)	286, 403, 476, 613, 694, 1024
AhdI	GACNNNNNGTC	1 cut(s)	96
AluBI	AGCT	2 cut(s)	842, 1115
AluI	AGCT	2 cut(s)	842, 1115
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	3 cut(s)	304, 537, 642
AlwI	GGATC	3 cut(s)	118, 139, 1146
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	3 cut(s)	45, 426, 559
ApeKI	GCWGC	2 cut(s)	962, 1081
AspLEI	GCGC	1 cut(s)	1039
AsuHPI	GGTGA	2 cut(s)	10, 76
AvaI	CYCGRG	1 cut(s)	726
BalI	TGGCCA	2 cut(s)	428, 561
BauI	CACGAG	2 cut(s)	246, 996
BbrPI	CACGTG	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	949, 1093
BccI	CCATC	4 cut(s)	311, 496, 589, 675
BclI	TGATCA	1 cut(s)	1129
BcoDI	GTCTC	3 cut(s)	304, 537, 642
BfaI	CTAG	3 cut(s)	275, 752, 1112
BfmI	CTRYAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	761
BglII	AGATCT	2 cut(s)	277, 754
BisI	GCNGC	2 cut(s)	963, 1082
BlpI	GCTNAGC	2 cut(s)	704, 732
BlsI	GCNGC	2 cut(s)	964, 1083
BmeRI	GACNNNNNGTC	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	726
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	5 cut(s)	469, 902, 910, 963, 974
BpiI	GAAGAC	1 cut(s)	385
Bpu1102I	GCTNAGC	2 cut(s)	704, 732
BpuEI	CTTGAG	3 cut(s)	623, 941, 1074
BsaAI	YACGTR	1 cut(s)	767
BsaHI	GRCGYC	1 cut(s)	530
BsaJI	CCNNGG	3 cut(s)	429, 562, 725
Bsc4I	CCNNNNNNNGG	1 cut(s)	834
Bse1I	ACTGG	2 cut(s)	318, 667
Bse3DI	GCAATG	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	429, 562, 725
BseGI	GGATG	4 cut(s)	322, 600, 686, 860
BseLI	CCNNNNNNNGG	1 cut(s)	834
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	2 cut(s)	318, 667
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	2 cut(s)	949, 1093
BseYI	CCCAGC	1 cut(s)	236
BsgI	GTGCAG	3 cut(s)	205, 210, 789
BshFI	GGCC	3 cut(s)	47, 428, 561
BsiHKAI	GWGCWC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	992
BslI	CCNNNNNNNGG	1 cut(s)	834
BsmAI	GTCTC	3 cut(s)	304, 537, 642
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	992
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	3 cut(s)	47, 428, 561
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	8 cut(s)	110, 131, 277, 369, 754, 916, 1129, 1138
Bsp1720I	GCTNAGC	2 cut(s)	704, 732
Bsp19I	CCATGG	2 cut(s)	429, 562
BspANI	GGCC	3 cut(s)	47, 428, 561
BspCNI	CTCAG	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	761
BspPI	GGATC	3 cut(s)	118, 139, 1146
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	318, 667
BssECI	CCNNGG	3 cut(s)	429, 562, 725
BssMI	GATC	8 cut(s)	110, 131, 277, 369, 754, 916, 1129, 1138
BssNI	GRCGYC	1 cut(s)	530
BssSI	CACGAG	2 cut(s)	246, 996
BssT1I	CCWWGG	2 cut(s)	429, 562
Bst2BI	CACGAG	2 cut(s)	246, 996
Bst4CI	ACNGT	6 cut(s)	298, 488, 983, 1053, 1097, 1105
Bst6I	CTCTTC	2 cut(s)	287, 645
BstACI	GRCGYC	1 cut(s)	530
BstAPI	GCANNNNNTGC	3 cut(s)	233, 359, 971
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	749
BstDEI	CTNAG	2 cut(s)	704, 732
BstDSI	CCRYGG	2 cut(s)	429, 562
BstF5I	GGATG	4 cut(s)	322, 600, 686, 860
BstHHI	GCGC	1 cut(s)	1039
BstKTI	GATC	8 cut(s)	113, 134, 280, 372, 757, 919, 1132, 1141
BstMAI	GTCTC	3 cut(s)	304, 537, 642
BstMBI	GATC	8 cut(s)	110, 131, 277, 369, 754, 916, 1129, 1138
BstMWI	GCNNNNNNNGC	6 cut(s)	233, 242, 359, 488, 971, 1081
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	949, 1093
BstV2I	GAAGAC	1 cut(s)	385
BstX2I	RGATCY	3 cut(s)	277, 754, 1138
BstYI	RGATCY	3 cut(s)	277, 754, 1138
BsuRI	GGCC	3 cut(s)	47, 428, 561
BtgI	CCRYGG	2 cut(s)	429, 562
BtsCI	GGATG	4 cut(s)	322, 600, 686, 860
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	3 cut(s)	222, 988, 1125
BveI	ACCTGC	1 cut(s)	761
Cac8I	GCNNGC	1 cut(s)	749
CfoI	GCGC	1 cut(s)	1039
CseI	GACGC	1 cut(s)	86
DdeI	CTNAG	2 cut(s)	704, 732
DpnI	GATC	8 cut(s)	112, 133, 279, 371, 756, 918, 1131, 1140
DpnII	GATC	8 cut(s)	110, 131, 277, 369, 754, 916, 1129, 1138
DriI	GACNNNNNGTC	1 cut(s)	96
EaeI	YGGCCR	3 cut(s)	45, 426, 559
Eam1104I	CTCTTC	2 cut(s)	287, 645
Eam1105I	GACNNNNNGTC	1 cut(s)	96
EarI	CTCTTC	2 cut(s)	287, 645
Eco130I	CCWWGG	2 cut(s)	429, 562
Eco32I	GATATC	1 cut(s)	625
Eco72I	CACGTG	1 cut(s)	767
Eco88I	CYCGRG	1 cut(s)	726
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	2 cut(s)	429, 562
EcoT22I	ATGCAT	3 cut(s)	84, 148, 903
ErhI	CCWWGG	2 cut(s)	429, 562
Esp3I	CGTCTC	1 cut(s)	537
FaqI	GGGAC	1 cut(s)	992
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	1129
Fnu4HI	GCNGC	2 cut(s)	963, 1082
FokI	GGATG	4 cut(s)	329, 607, 693, 867
Fsp4HI	GCNGC	2 cut(s)	963, 1082
FspBI	CTAG	3 cut(s)	275, 752, 1112
GlaI	GCGC	1 cut(s)	1038
GluI	GCNGC	2 cut(s)	963, 1082
GsaI	CCCAGC	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	47, 428, 561
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	1039
Hin1I	GRCGYC	1 cut(s)	530
Hin6I	GCGC	1 cut(s)	1037
HinP1I	GCGC	1 cut(s)	1037
HincII	GTYRAC	1 cut(s)	934
HindII	GTYRAC	1 cut(s)	934
HinfI	GANTC	2 cut(s)	823, 1160
HpaI	GTTAAC	1 cut(s)	934
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	2 cut(s)	10, 76
Hpy166II	GTNNAC	2 cut(s)	934, 1056
Hpy188I	TCNGA	1 cut(s)	537
Hpy188III	TCNNGA	6 cut(s)	8, 25, 419, 543, 920, 1091
Hpy8I	GTNNAC	2 cut(s)	934, 1056
HpyAV	CCTTC	6 cut(s)	31, 61, 245, 546, 671, 1006
HpyCH4III	ACNGT	6 cut(s)	298, 488, 983, 1053, 1097, 1105
HpyCH4IV	ACGT	2 cut(s)	530, 766
HpyF10VI	GCNNNNNNNGC	6 cut(s)	233, 242, 359, 488, 971, 1081
HpyF3I	CTNAG	2 cut(s)	704, 732
HpySE526I	ACGT	2 cut(s)	530, 766
Hsp92I	GRCGYC	1 cut(s)	530
HspAI	GCGC	1 cut(s)	1037
Ksp22I	TGATCA	1 cut(s)	1129
KspAI	GTTAAC	1 cut(s)	934
Kzo9I	GATC	8 cut(s)	110, 131, 277, 369, 754, 916, 1129, 1138
LmnI	GCTCC	3 cut(s)	338, 839, 1158
Lsp1109I	GCAGC	2 cut(s)	949, 1093
LweI	GCATC	5 cut(s)	469, 902, 910, 963, 974
MaeI	CTAG	3 cut(s)	275, 752, 1112
MaeII	ACGT	2 cut(s)	530, 766
MaeIII	GTNAC	3 cut(s)	254, 803, 876
MalI	GATC	8 cut(s)	112, 133, 279, 371, 756, 918, 1131, 1140
MboI	GATC	8 cut(s)	110, 131, 277, 369, 754, 916, 1129, 1138
MboII	GAAGA	5 cut(s)	274, 390, 488, 632, 794
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	3 cut(s)	277, 754, 1138
MhlI	GDGCHC	1 cut(s)	335
MlsI	TGGCCA	2 cut(s)	428, 561
MluCI	AATT	4 cut(s)	471, 519, 576, 1117
MluNI	TGGCCA	2 cut(s)	428, 561
MlyI	GAGTC	1 cut(s)	1169
MnlI	CCTC	8 cut(s)	32, 490, 499, 598, 735, 838, 1010, 1098
Mox20I	TGGCCA	2 cut(s)	428, 561
Mph1103I	ATGCAT	3 cut(s)	84, 148, 903
MscI	TGGCCA	2 cut(s)	428, 561
MseI	TTAA	3 cut(s)	342, 816, 933
Msp20I	TGGCCA	2 cut(s)	428, 561
MspI	CCGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	692
MwoI	GCNNNNNNNGC	6 cut(s)	233, 242, 359, 488, 971, 1081
NcoI	CCATGG	2 cut(s)	429, 562
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	8 cut(s)	110, 131, 277, 369, 754, 916, 1129, 1138
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	803, 876
NsiI	ATGCAT	3 cut(s)	84, 148, 903
PctI	GAATGC	1 cut(s)	692
PfeI	GAWTC	1 cut(s)	823
PkrI	GCNGC	2 cut(s)	964, 1083
PleI	GAGTC	1 cut(s)	1168
PmaCI	CACGTG	1 cut(s)	767
PmlI	CACGTG	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	1168
Ppu21I	YACGTR	1 cut(s)	767
PspCI	CACGTG	1 cut(s)	767
PspFI	CCCAGC	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	3 cut(s)	277, 754, 1138
SaqAI	TTAA	3 cut(s)	342, 816, 933
SatI	GCNGC	2 cut(s)	963, 1082
Sau3AI	GATC	8 cut(s)	110, 131, 277, 369, 754, 916, 1129, 1138
SchI	GAGTC	1 cut(s)	1169
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	5 cut(s)	469, 902, 910, 963, 974
SfcI	CTRYAG	1 cut(s)	259
SmlI	CTYRAG	3 cut(s)	602, 920, 1089
SmoI	CTYRAG	3 cut(s)	602, 920, 1089
Sse9I	AATT	4 cut(s)	471, 519, 576, 1117
SspI	AATATT	1 cut(s)	913
SspMI	CTAG	3 cut(s)	275, 752, 1112
StyI	CCWWGG	2 cut(s)	429, 562
TaaI	ACNGT	6 cut(s)	298, 488, 983, 1053, 1097, 1105
TaiI	ACGT	2 cut(s)	533, 769
TaqI	TCGA	1 cut(s)	821
TasI	AATT	4 cut(s)	471, 519, 576, 1117
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	3 cut(s)	342, 816, 933
Tru9I	TTAA	3 cut(s)	342, 816, 933
TscAI	CASTG	3 cut(s)	229, 988, 1132
TseFI	GTSAC	2 cut(s)	803, 876
TseI	GCWGC	2 cut(s)	962, 1081
Tsp45I	GTSAC	2 cut(s)	803, 876
TspDTI	ATGAA	3 cut(s)	354, 513, 824
TspRI	CASTG	3 cut(s)	229, 988, 1132
XspI	CTAG	3 cut(s)	275, 752, 1112
ZraI	GACGTC	1 cut(s)	531
Zsp2I	ATGCAT	3 cut(s)	84, 148, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.