Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002609

Physical Location & Seq

Genomic Coordinates Reverse (-)

40652337 .. 40655863

Gene Structure 3527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1326400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCTTTGTCGGTGTCCAGAAGGCTTTTGCGTTCATTTGGTTCTGTATTAGCATCGGGCCGCTGTGACTCTCCAAGTAATTTATATCCATCATCATTTCGTGCTTCTCTCGATTTTTGCGGCCATGTTCCCGGGGATATCTTACTTTCTGGAGAATTGTCAACTGTTTCCAAGGCTGGATCATTTTTTCTAGCAAATAGAAGTCTTTCAACCTCCAACCCGACTCCCGAATCAAGTGGAGGTGCCTTTCCCTCTAATTTATTGTCTGCAAAGCCCGTCATTGCATCAGACCGTTCTATAGGACTCGGTCAAGACCTTGTGATTCCAGTGACAAATTTTCATTATGAAGATAAAGGCTTCACAGTTTTGGCTGGTGATGTTTTCGATGTACCTATTAGGAAGGATATTATTCATCGGGTTGTACTATGGCAGCTAGCAAAAAGGCAACAGGGAACACATTCAACAAAAACTATTAGTGAGGTTAGTGGGACTGGCAGAAAGCCATGGAATCAGAAGGGTACTGGTCGAGCAAGGCACGGAACATTACGTGGCCCCCAGTTTCGAGGAGGATGCACAATGCATGGTCCTAAGCCACGAAGCCATGAATTTAAGCTGAATAAGAAGGTTCGGCGTCTAGGACTAAAGATTGCTCTGACAGCTCGGGCAGCAGAGGGAAAGGCAATTCTCTCTTTTCCTCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCAAAAAAAAAAATCCCTCCCTCCACGCACAGACACTCCTCCCCTTTGCTTTGTTGTGCCGTCTTCTGGTTTTTGAAGATTTTGAGGTCCCTACGCATAAAACCAAGAATATTGTGAACTACGTCCAACAAATGGAGGGTTCCAAGAAATTTCTGCTGGTGGATGGTACCAAAACCGAGGATGGTAAACAAATGTTACCTGAAAAGCTCAAGTTGGCTACACAAAATTTGCATTACGTGAACGTGCTGCCTGCAGTAGGTTTGAACGTCTACAGCATCCTGCAGCATGACACACTGGTGATGACCCAAGCTGCTGTAAATGAAATTGTCGAGCGGATGCACACCCCAATCAACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

381

Amino Acids

41.44

Weight (kDa)

10.06

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L4	PF00573	123 - 228	2.5e-45	Ribosomal protein L4/L1 family
Ribosomal_L4	PF00573	282 - 373	2e-15	Ribosomal protein L4/L1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20060
fragaria_vesca	FvH4_3g01410 FvH4_3g01410 FvH4_3g43720 FvH4_3g43720 FvH4_3g43720 FvH4_3g43720 FvH4_3g43740
malus_domestica	MD05G1352400.v1.1 MD10G1326400.v1.1
prunus_persica	Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.4G015300_v2.0.a1
pyrus_communis	pycom05g31930 pycom10g27640
rosa_chinensis	RchiOBHm_Chr5g0002131 RchiOBHm_Chr5g0078391
rosa_laevigata	RLG00000030999
rosa_multiflora	Rmu_co8359539.1_g000001 Rmu_sc0004140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003890 Rroxscaffold_1G00073780
rosa_rugosa	Rorug04G0394500 Rorug04G0394500 Rorug05G0460700
rosa_samantha	Rh5AG016300 Rh5AG514400 Rh5BG019800 Rh5CG017600 Rh5CG560900 Rh5CG561400 Rh5DG017800 Rh5DG549100
rosa_wichuraiana	Rw5G001590 Rw5G047770 Rw5G047890 Rw5G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	950
AccB1I	GGYRCC	2 cut(s)	242, 950
AccB7I	CCANNNNNTGG	1 cut(s)	916
AccBSI	CCGCTC	1 cut(s)	1117
AccI	GTMKAC	1 cut(s)	1053
AciI	CCGC	4 cut(s)	61, 120, 749, 1117
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	4 cut(s)	334, 605, 932, 1009
AcyI	GRCGYC	1 cut(s)	631
AfaI	GTAC	4 cut(s)	390, 423, 520, 952
AfiI	CCNNNNNNNGG	3 cut(s)	850, 916, 1040
AgsI	TTSAA	4 cut(s)	210, 462, 860, 1048
AleI	CACNNNNGTG	1 cut(s)	1079
AluBI	AGCT	5 cut(s)	433, 613, 659, 991, 1094
AluI	AGCT	5 cut(s)	433, 613, 659, 991, 1094
AlwI	GGATC	1 cut(s)	187
Ama87I	CYCGRG	2 cut(s)	131, 660
AoxI	GGCC	3 cut(s)	58, 121, 550
ApeKI	GCWGC	5 cut(s)	430, 665, 1030, 1066, 1094
ApoI	RAATTY	4 cut(s)	334, 605, 932, 1009
Asp700I	GAANNNNTTC	2 cut(s)	205, 457
Asp718I	GGTACC	1 cut(s)	950
AspS9I	GGNCC	4 cut(s)	58, 551, 584, 871
AsuC2I	CCSGG	2 cut(s)	132, 133
AsuHPI	GGTGA	2 cut(s)	386, 1093
AsuNHI	GCTAGC	1 cut(s)	433
AvaI	CYCGRG	2 cut(s)	131, 660
AvaII	GGWCC	2 cut(s)	584, 871
BanI	GGYRCC	2 cut(s)	242, 950
BbsI	GAAGAC	1 cut(s)	839
BbvI	GCAGC	5 cut(s)	442, 677, 1017, 1078, 1081
BccI	CCATC	3 cut(s)	97, 941, 959
BceAI	ACGGC	1 cut(s)	828
BcgI	CGANNNNNNTGC	2 cut(s)	552, 586
BcnI	CCSGG	2 cut(s)	132, 133
BfaI	CTAG	3 cut(s)	191, 434, 635
BfmI	CTRYAG	4 cut(s)	297, 1035, 1054, 1064
BisI	GCNGC	7 cut(s)	61, 121, 431, 666, 1031, 1067, 1095
BlsI	GCNGC	7 cut(s)	62, 122, 432, 667, 1032, 1068, 1096
Bme1390I	CCNGG	2 cut(s)	132, 133
Bme18I	GGWCC	2 cut(s)	584, 871
BmeT110I	CYCGRG	2 cut(s)	131, 660
BmgT120I	GGNCC	4 cut(s)	58, 551, 584, 871
BmiI	GGNNCC	5 cut(s)	244, 553, 873, 925, 952
BmrFI	CCNGG	2 cut(s)	132, 133
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	5 cut(s)	62, 293, 560, 1068, 1110
BmtI	GCTAGC	1 cut(s)	437
BmuI	ACTGGG	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	839
BpmI	CTGGAG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	977
BpuMI	CCSGG	2 cut(s)	132, 133
BsaAI	YACGTR	2 cut(s)	548, 1021
BsaHI	GRCGYC	1 cut(s)	631
BsaJI	CCNNGG	5 cut(s)	131, 132, 171, 503, 960
BsaXI	ACNNNNNCTCC	2 cut(s)	804, 834
Bsc4I	CCNNNNNNNGG	3 cut(s)	850, 916, 1040
Bse1I	ACTGG	5 cut(s)	326, 496, 526, 556, 1083
Bse3DI	GCAATG	1 cut(s)	279
BseDI	CCNNGG	5 cut(s)	131, 132, 171, 503, 960
BseGI	GGATG	5 cut(s)	575, 952, 970, 1059, 1125
BseLI	CCNNNNNNNGG	3 cut(s)	850, 916, 1040
BseMI	GCAATG	1 cut(s)	279
BseNI	ACTGG	5 cut(s)	326, 496, 526, 556, 1083
BseRI	GAGGAG	2 cut(s)	579, 812
BseXI	GCAGC	5 cut(s)	442, 677, 1017, 1078, 1081
BshFI	GGCC	3 cut(s)	60, 123, 552
BshNI	GGYRCC	2 cut(s)	242, 950
BsiHKCI	CYCGRG	2 cut(s)	131, 660
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	2 cut(s)	502, 857
BslI	CCNNNNNNNGG	3 cut(s)	850, 916, 1040
BsmFI	GGGAC	2 cut(s)	502, 857
BsnI	GGCC	3 cut(s)	60, 123, 552
BsoBI	CYCGRG	2 cut(s)	131, 660
Bsp143I	GATC	1 cut(s)	179
Bsp19I	CCATGG	1 cut(s)	503
BspACI	CCGC	4 cut(s)	61, 120, 749, 1117
BspANI	GGCC	3 cut(s)	60, 123, 552
BspLI	GGNNCC	5 cut(s)	244, 553, 873, 925, 952
BspMAI	CTGCAG	2 cut(s)	1039, 1068
BspOI	GCTAGC	1 cut(s)	437
BspPI	GGATC	1 cut(s)	187
BspT107I	GGYRCC	2 cut(s)	242, 950
BsrBI	CCGCTC	1 cut(s)	1117
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	5 cut(s)	326, 496, 526, 556, 1083
BssECI	CCNNGG	5 cut(s)	131, 132, 171, 503, 960
BssMI	GATC	1 cut(s)	179
BssNI	GRCGYC	1 cut(s)	631
BssT1I	CCWWGG	2 cut(s)	171, 503
Bst4CI	ACNGT	4 cut(s)	166, 293, 364, 1139
BstACI	GRCGYC	1 cut(s)	631
BstBAI	YACGTR	2 cut(s)	548, 1021
BstC8I	GCNNGC	2 cut(s)	435, 1035
BstDEI	CTNAG	1 cut(s)	588
BstDSI	CCRYGG	1 cut(s)	503
BstENI	CCTNNNNNAGG	1 cut(s)	1038
BstF5I	GGATG	5 cut(s)	575, 952, 970, 1059, 1125
BstKTI	GATC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	2 cut(s)	656, 665
BstSCI	CCNGG	2 cut(s)	130, 131
BstSFI	CTRYAG	4 cut(s)	297, 1035, 1054, 1064
BstV1I	GCAGC	5 cut(s)	442, 677, 1017, 1078, 1081
BstV2I	GAAGAC	1 cut(s)	839
BsuRI	GGCC	3 cut(s)	60, 123, 552
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	5 cut(s)	575, 952, 970, 1059, 1125
BtsIMutI	CAGTG	2 cut(s)	333, 1076
Cac8I	GCNNGC	2 cut(s)	435, 1035
Cfr13I	GGNCC	4 cut(s)	58, 551, 584, 871
Cfr9I	CCCGGG	1 cut(s)	131
CseI	GACGC	1 cut(s)	620
Csp6I	GTAC	4 cut(s)	389, 422, 519, 951
CviAII	CATG	5 cut(s)	125, 504, 581, 602, 1070
CviQI	GTAC	4 cut(s)	389, 422, 519, 951
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	1 cut(s)	181
DpnII	GATC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	171, 503
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	584, 871
Eco88I	CYCGRG	2 cut(s)	131, 660
EcoNI	CCTNNNNNAGG	1 cut(s)	1038
EcoO109I	RGGNCCY	1 cut(s)	871
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	171, 503
EcoT22I	ATGCAT	1 cut(s)	582
ErhI	CCWWGG	2 cut(s)	171, 503
FaeI	CATG	5 cut(s)	128, 507, 584, 605, 1073
FaqI	GGGAC	2 cut(s)	502, 857
FatI	CATG	5 cut(s)	124, 503, 580, 601, 1069
FauI	CCCGC	1 cut(s)	756
FblI	GTMKAC	1 cut(s)	1053
Fnu4HI	GCNGC	7 cut(s)	61, 121, 431, 666, 1031, 1067, 1095
FokI	GGATG	5 cut(s)	582, 959, 977, 1046, 1132
Fsp4HI	GCNGC	7 cut(s)	61, 121, 431, 666, 1031, 1067, 1095
FspBI	CTAG	3 cut(s)	191, 434, 635
GluI	GCNGC	7 cut(s)	61, 121, 431, 666, 1031, 1067, 1095
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	60, 123, 552
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	620
Hin1I	GRCGYC	1 cut(s)	631
Hin1II	CATG	5 cut(s)	128, 507, 584, 605, 1073
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	6 cut(s)	68, 223, 230, 303, 322, 508
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	386, 1093
Hpy166II	GTNNAC	5 cut(s)	162, 901, 971, 1024, 1054
Hpy188I	TCNGA	3 cut(s)	289, 513, 654
Hpy188III	TCNNGA	5 cut(s)	18, 110, 150, 227, 311
Hpy8I	GTNNAC	5 cut(s)	162, 901, 971, 1024, 1054
HpyAV	CCTTC	4 cut(s)	15, 394, 508, 616
HpyCH4III	ACNGT	4 cut(s)	166, 293, 364, 1139
HpyCH4IV	ACGT	5 cut(s)	547, 906, 1020, 1026, 1050
HpyCH4V	TGCA	8 cut(s)	269, 284, 573, 580, 1015, 1037, 1066, 1123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	656, 665
HpyF3I	CTNAG	1 cut(s)	588
HpySE526I	ACGT	5 cut(s)	547, 906, 1020, 1026, 1050
Hsp92I	GRCGYC	1 cut(s)	631
Hsp92II	CATG	5 cut(s)	128, 507, 584, 605, 1073
KpnI	GGTACC	1 cut(s)	954
Kzo9I	GATC	1 cut(s)	179
Lsp1109I	GCAGC	5 cut(s)	442, 677, 1017, 1078, 1081
LweI	GCATC	5 cut(s)	62, 293, 560, 1068, 1110
MaeI	CTAG	3 cut(s)	191, 434, 635
MaeII	ACGT	5 cut(s)	547, 906, 1020, 1026, 1050
MaeIII	GTNAC	3 cut(s)	65, 328, 978
MalI	GATC	1 cut(s)	181
MbiI	CCGCTC	1 cut(s)	1117
MboI	GATC	1 cut(s)	179
MboII	GAAGA	3 cut(s)	359, 839, 872
MluCI	AATT	9 cut(s)	79, 155, 256, 334, 605, 681, 932, 1009, 1107
MlyI	GAGTC	3 cut(s)	62, 217, 297
MmeI	TCCRAC	2 cut(s)	240, 934
Mph1103I	ATGCAT	1 cut(s)	582
MroXI	GAANNNNTTC	2 cut(s)	205, 457
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	1079
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	132, 133
MwoI	GCNNNNNNNGC	2 cut(s)	656, 665
NciI	CCSGG	2 cut(s)	132, 133
NcoI	CCATGG	1 cut(s)	503
NdeII	GATC	1 cut(s)	179
NheI	GCTAGC	1 cut(s)	433
NlaIII	CATG	5 cut(s)	128, 507, 584, 605, 1073
NlaIV	GGNNCC	5 cut(s)	244, 553, 873, 925, 952
NmuCI	GTSAC	2 cut(s)	65, 328
NsiI	ATGCAT	1 cut(s)	582
OliI	CACNNNNGTG	1 cut(s)	1079
PdmI	GAANNNNTTC	2 cut(s)	205, 457
PfeI	GAWTC	3 cut(s)	230, 322, 508
PflFI	GACNNNGTC	1 cut(s)	306
PflMI	CCANNNNNTGG	1 cut(s)	916
PkrI	GCNGC	7 cut(s)	62, 122, 432, 667, 1032, 1068, 1096
PleI	GAGTC	3 cut(s)	62, 217, 297
PpsI	GAGTC	3 cut(s)	62, 217, 297
Ppu21I	YACGTR	2 cut(s)	548, 1021
PpuMI	RGGWCCY	1 cut(s)	871
Psp5II	RGGWCCY	1 cut(s)	871
PspN4I	GGNNCC	5 cut(s)	244, 553, 873, 925, 952
PspPI	GGNCC	4 cut(s)	58, 551, 584, 871
PspPPI	RGGWCCY	1 cut(s)	871
PstI	CTGCAG	2 cut(s)	1039, 1068
PsyI	GACNNNGTC	1 cut(s)	306
RsaI	GTAC	4 cut(s)	390, 423, 520, 952
RsaNI	GTAC	4 cut(s)	389, 422, 519, 951
RseI	CAYNNNNRTG	1 cut(s)	1079
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	7 cut(s)	61, 121, 431, 666, 1031, 1067, 1095
Sau3AI	GATC	1 cut(s)	179
Sau96I	GGNCC	4 cut(s)	58, 551, 584, 871
SchI	GAGTC	3 cut(s)	62, 217, 297
ScrFI	CCNGG	2 cut(s)	132, 133
SfaNI	GCATC	5 cut(s)	62, 293, 560, 1068, 1110
SfcI	CTRYAG	4 cut(s)	297, 1035, 1054, 1064
SinI	GGWCC	2 cut(s)	584, 871
SmaI	CCCGGG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	1079
SmlI	CTYRAG	1 cut(s)	992
SmoI	CTYRAG	1 cut(s)	992
Sse9I	AATT	9 cut(s)	79, 155, 256, 334, 605, 681, 932, 1009, 1107
SsiI	CCGC	4 cut(s)	61, 120, 749, 1117
SspI	AATATT	1 cut(s)	895
SspMI	CTAG	3 cut(s)	191, 434, 635
StyD4I	CCNGG	2 cut(s)	130, 131
StyI	CCWWGG	2 cut(s)	171, 503
TaaI	ACNGT	4 cut(s)	166, 293, 364, 1139
TaiI	ACGT	5 cut(s)	550, 909, 1023, 1029, 1053
TaqI	TCGA	5 cut(s)	111, 384, 526, 562, 1113
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	9 cut(s)	79, 155, 256, 334, 605, 681, 932, 1009, 1107
TatI	WGTACW	1 cut(s)	421
TauI	GCSGC	2 cut(s)	63, 123
TfiI	GAWTC	3 cut(s)	230, 322, 508
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	2 cut(s)	333, 1083
TseFI	GTSAC	2 cut(s)	65, 328
TseI	GCWGC	5 cut(s)	430, 665, 1030, 1066, 1094
Tsp45I	GTSAC	2 cut(s)	65, 328
TspDTI	ATGAA	6 cut(s)	24, 329, 360, 401, 618, 1119
TspGWI	ACGGA	1 cut(s)	552
TspMI	CCCGGG	1 cut(s)	131
TspRI	CASTG	2 cut(s)	333, 1083
Tth111I	GACNNNGTC	1 cut(s)	306
Van91I	CCANNNNNTGG	1 cut(s)	916
VpaK11BI	GGWCC	2 cut(s)	584, 871
XagI	CCTNNNNNAGG	1 cut(s)	1038
XapI	RAATTY	4 cut(s)	334, 605, 932, 1009
XmaI	CCCGGG	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	1053
XmnI	GAANNNNTTC	2 cut(s)	205, 457
XspI	CTAG	3 cut(s)	191, 434, 635
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.