Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002609

Physical Location & Seq

Genomic Coordinates Forward (+)

718960 .. 720854

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G015300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTTTGTCGGTGTCCAGAAGGCTTTTACGTTCGTTTGGTTCCGTCTTAGCATCGGGCCACTGTGACTCTCCAAGTAGTTTATATCCATCACTTCATGCTTCTCACGATTTATGTGGCCATGTTCTAGGGGATATCTTATTTTGTGAAGAATTGTCGCCTTTTTCTAAGGCTCGATCATCTTTTCTAGCAAATCGAAGACTTTTAACTTCTATCTCAACTCCTGAATCAAGTGGAGGTGCATTTCCCTCTAATTTATTGTCTGCAAAGCCTGTGGTTGCATCAGAGGGTACTATAGGTACGAGGAAAGGTCACAAAACATTGCTTGGAACACATTCAACAAAAACTATTAGTGAGGTTAGTGGGACTGGGAGAAAGCCATGGAATCAGAAGGGTACTGGTCGAGCGAGGCAGGGATCATTGCGTAGTCCCCAGTTCAGAGGAGGTTCCACAATGCATGGTCCTAAGCCACGAAGCCATGCTTTTAAGCTGAATAAGAAGCTTCTGGTTTTTGATGATTTTGAGGTCCCAACACATAAAACCAAGAATATTGTGAACTACGTCCAGCAAATGGACAACTCCAAGAAACTTCTGCTGTTGGCTACACAAAATTTACATTATGTGAATGTGCTGCCCGCAGTGGGTTTGAACGTCAACAGCATCCTGCAGCATGATACACTGGTGATGTCCCGTGCTGCGGTAAATGAAATTGTTGAGCGGATGCACACTCCAATTAAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

248

Amino Acids

26.93

Weight (kDa)

10.32

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20060
fragaria_vesca	FvH4_3g01410 FvH4_3g01410 FvH4_3g43720 FvH4_3g43720 FvH4_3g43720 FvH4_3g43720 FvH4_3g43740
malus_domestica	MD05G1352400.v1.1 MD10G1326400.v1.1
prunus_persica	Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.4G015300_v2.0.a1
pyrus_communis	pycom05g31930 pycom10g27640
rosa_chinensis	RchiOBHm_Chr5g0002131 RchiOBHm_Chr5g0078391
rosa_laevigata	RLG00000030999
rosa_multiflora	Rmu_co8359539.1_g000001 Rmu_sc0004140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003890 Rroxscaffold_1G00073780
rosa_rugosa	Rorug04G0394500 Rorug04G0394500 Rorug05G0460700
rosa_samantha	Rh5AG016300 Rh5AG514400 Rh5BG019800 Rh5CG017600 Rh5CG560900 Rh5CG561400 Rh5DG017800 Rh5DG549100
rosa_wichuraiana	Rw5G001590 Rw5G047770 Rw5G047890 Rw5G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccBSI	CCGCTC	1 cut(s)	718
AciI	CCGC	3 cut(s)	636, 698, 718
AclI	AACGTT	1 cut(s)	739
AclWI	GGATC	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	610
AfaI	GTAC	3 cut(s)	292, 301, 397
AfiI	CCNNNNNNNGG	3 cut(s)	571, 641, 697
AgsI	TTSAA	2 cut(s)	339, 649
AluBI	AGCT	2 cut(s)	490, 502
AluI	AGCT	2 cut(s)	490, 502
AlwI	GGATC	1 cut(s)	424
AoxI	GGCC	2 cut(s)	58, 118
ApeKI	GCWGC	3 cut(s)	631, 667, 695
ApoI	RAATTY	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	334
AspS9I	GGNCC	3 cut(s)	58, 461, 526
AsuHPI	GGTGA	1 cut(s)	694
AvaII	GGWCC	2 cut(s)	461, 526
BaeI	ACNNNNGTAYC	2 cut(s)	666, 699
BalI	TGGCCA	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	618, 679, 682
BccI	CCATC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	128, 188
BfmI	CTRYAG	2 cut(s)	294, 665
BisI	GCNGC	3 cut(s)	632, 668, 696
BlsI	GCNGC	3 cut(s)	633, 669, 697
Bme18I	GGWCC	2 cut(s)	461, 526
BmgT120I	GGNCC	3 cut(s)	58, 461, 526
BmiI	GGNNCC	3 cut(s)	43, 448, 528
BmrI	ACTGGG	2 cut(s)	378, 427
BmsI	GCATC	4 cut(s)	62, 290, 669, 711
BmuI	ACTGGG	2 cut(s)	378, 427
BpiI	GAAGAC	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	3 cut(s)	571, 641, 697
Bse1I	ACTGG	4 cut(s)	373, 403, 433, 684
Bse3DI	GCAATG	2 cut(s)	320, 419
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	2 cut(s)	660, 726
BseLI	CCNNNNNNNGG	3 cut(s)	571, 641, 697
BseMI	GCAATG	2 cut(s)	320, 419
BseNI	ACTGG	4 cut(s)	373, 403, 433, 684
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	3 cut(s)	618, 679, 682
BshFI	GGCC	2 cut(s)	60, 120
BslFI	GGGAC	4 cut(s)	379, 414, 512, 673
BslI	CCNNNNNNNGG	3 cut(s)	571, 641, 697
BsmFI	GGGAC	4 cut(s)	379, 414, 512, 673
BsnI	GGCC	2 cut(s)	60, 120
Bsp143I	GATC	2 cut(s)	176, 416
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	3 cut(s)	636, 698, 718
BspANI	GGCC	2 cut(s)	60, 120
BspLI	GGNNCC	3 cut(s)	43, 448, 528
BspMAI	CTGCAG	1 cut(s)	669
BspPI	GGATC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	718
BsrDI	GCAATG	2 cut(s)	320, 419
BsrI	ACTGG	4 cut(s)	373, 403, 433, 684
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	2 cut(s)	176, 416
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	3 cut(s)	49, 168, 465
BstDSI	CCRYGG	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	660, 726
BstKTI	GATC	2 cut(s)	179, 419
BstMBI	GATC	2 cut(s)	176, 416
BstSFI	CTRYAG	2 cut(s)	294, 665
BstV1I	GCAGC	3 cut(s)	618, 679, 682
BstV2I	GAAGAC	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	60, 120
BtgI	CCRYGG	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	660, 726
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	3 cut(s)	61, 645, 677
Cac8I	GCNNGC	1 cut(s)	636
Cfr13I	GGNCC	3 cut(s)	58, 461, 526
Csp6I	GTAC	3 cut(s)	291, 300, 396
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CviAII	CATG	6 cut(s)	98, 122, 381, 458, 479, 671
CviQI	GTAC	3 cut(s)	291, 300, 396
DdeI	CTNAG	3 cut(s)	49, 168, 465
DpnI	GATC	2 cut(s)	178, 418
DpnII	GATC	2 cut(s)	176, 416
EaeI	YGGCCR	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	461, 526
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	6 cut(s)	101, 125, 384, 461, 482, 674
FalI	AAGNNNNNCTT	2 cut(s)	466, 498
FaqI	GGGAC	4 cut(s)	379, 414, 512, 673
FatI	CATG	6 cut(s)	97, 121, 380, 457, 478, 670
FauI	CCCGC	1 cut(s)	643
Fnu4HI	GCNGC	3 cut(s)	632, 668, 696
FokI	GGATG	2 cut(s)	647, 733
Fsp4HI	GCNGC	3 cut(s)	632, 668, 696
FspBI	CTAG	2 cut(s)	128, 188
GluI	GCNGC	3 cut(s)	632, 668, 696
HaeIII	GGCC	2 cut(s)	60, 120
Hin1II	CATG	6 cut(s)	101, 125, 384, 461, 482, 674
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	3 cut(s)	68, 227, 385
HphI	GGTGA	1 cut(s)	694
Hpy166II	GTNNAC	2 cut(s)	556, 655
Hpy188I	TCNGA	3 cut(s)	286, 390, 440
Hpy188III	TCNNGA	3 cut(s)	18, 107, 224
Hpy8I	GTNNAC	2 cut(s)	556, 655
HpyAV	CCTTC	2 cut(s)	15, 385
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	4 cut(s)	31, 561, 651, 739
HpyCH4V	TGCA	6 cut(s)	242, 266, 281, 457, 667, 724
HpyF3I	CTNAG	3 cut(s)	49, 168, 465
HpySE526I	ACGT	4 cut(s)	31, 561, 651, 739
Hsp92II	CATG	6 cut(s)	101, 125, 384, 461, 482, 674
Kzo9I	GATC	2 cut(s)	176, 416
Lsp1109I	GCAGC	3 cut(s)	618, 679, 682
LweI	GCATC	4 cut(s)	62, 290, 669, 711
MaeI	CTAG	2 cut(s)	128, 188
MaeII	ACGT	4 cut(s)	31, 561, 651, 739
MaeIII	GTNAC	2 cut(s)	65, 311
MalI	GATC	2 cut(s)	178, 418
MbiI	CCGCTC	1 cut(s)	718
MboI	GATC	2 cut(s)	176, 416
MboII	GAAGA	2 cut(s)	161, 210
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	5 cut(s)	152, 253, 610, 708, 732
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	9 cut(s)	230, 259, 280, 297, 349, 402, 434, 437, 517
Mox20I	TGGCCA	1 cut(s)	120
Mph1103I	ATGCAT	1 cut(s)	459
MroXI	GAANNNNTTC	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	3 cut(s)	206, 486, 735
Msp20I	TGGCCA	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	2 cut(s)	176, 416
NlaIII	CATG	6 cut(s)	101, 125, 384, 461, 482, 674
NlaIV	GGNNCC	3 cut(s)	43, 448, 528
NmuCI	GTSAC	2 cut(s)	65, 311
NsiI	ATGCAT	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	227, 385
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	3 cut(s)	633, 669, 697
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	526
Psp1406I	AACGTT	1 cut(s)	739
Psp5II	RGGWCCY	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	43, 448, 528
PspPI	GGNCC	3 cut(s)	58, 461, 526
PspPPI	RGGWCCY	1 cut(s)	526
PstI	CTGCAG	1 cut(s)	669
RsaI	GTAC	3 cut(s)	292, 301, 397
RsaNI	GTAC	3 cut(s)	291, 300, 396
SaqAI	TTAA	3 cut(s)	206, 486, 735
SatI	GCNGC	3 cut(s)	632, 668, 696
Sau3AI	GATC	2 cut(s)	176, 416
Sau96I	GGNCC	3 cut(s)	58, 461, 526
SchI	GAGTC	1 cut(s)	62
SfaNI	GCATC	4 cut(s)	62, 290, 669, 711
SfcI	CTRYAG	2 cut(s)	294, 665
SinI	GGWCC	2 cut(s)	461, 526
Sse9I	AATT	5 cut(s)	152, 253, 610, 708, 732
SsiI	CCGC	3 cut(s)	636, 698, 718
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	2 cut(s)	128, 188
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	4 cut(s)	34, 564, 654, 742
TaqI	TCGA	3 cut(s)	175, 196, 403
TasI	AATT	5 cut(s)	152, 253, 610, 708, 732
TfiI	GAWTC	2 cut(s)	227, 385
Tru1I	TTAA	3 cut(s)	206, 486, 735
Tru9I	TTAA	3 cut(s)	206, 486, 735
TscAI	CASTG	3 cut(s)	68, 645, 684
TseFI	GTSAC	2 cut(s)	65, 311
TseI	GCWGC	3 cut(s)	631, 667, 695
Tsp45I	GTSAC	2 cut(s)	65, 311
TspDTI	ATGAA	2 cut(s)	86, 720
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	3 cut(s)	68, 645, 684
Van91I	CCANNNNNTGG	1 cut(s)	571
VpaK11BI	GGWCC	2 cut(s)	461, 526
XapI	RAATTY	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	334
XspI	CTAG	2 cut(s)	128, 188
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.