Rh5CG561400

ribosomal protein L4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002609
Physical Location & Seq
Reverse (-)
78723217 .. 78724932
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG561400.1

Sequence Viewer

Length: 678 bp
ATGTGGAATTGTTTATTGGTGAATGTGTATCCTAAGATAGGACTTTGTCTTGATCTTGTAATTTCAGTGACAAAATTTCTTGATGAAAAGAAAGGCTTCACAACTTTGGCTAGTGATGTTTTTGATGCACCTATTACGATGGATATTGCTCGTCGGATATTTTTCTTCTTTCGTTGGCTTCATCCAGTTGTGCTGTGGCAGCTAGCAAAAAGGCAACAGCCATCGAATTGGAAGGAGAGTGGTCGAGCCAGCCATGGAACATTGAGTGATCCCCAGCTCAGAGGTCTTAAGCCACGAAGTCATACTATTAAGAATGTCGAACGTCTGGGACTAAAGATTGCTCTGACATCTCGAGCGGCACAGGGAAAGCTTCTGGTTTTTGAGGATTTTGGGATCTACAGAAATAAACCCAAGAACATTGTGAACTACATCAAGCAAAGACCGAAAAAGGAGAAAAAGAAGAAAATTCTGCTGGTAGATGGTGGTCCAATAAGTGAAAAGCTCAAGTTGGCTACTAAAAATTTACATTACGTGACTGTGCTGCCTTCAAGTGAGTTGGACATCGACAGCATCCTTTACTATGACACACTGGTGATGTCCCATGATGATGTAAATAAAATTGCTGAGCAAATTATGTATACTCCAATCAACCATGGATGCAGCACAACATACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L4

Protein Analysis

225

Amino Acids

25.87

Weight (kDa)

9.65

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L4 PF00573 74 - 209 1.2e-18 Ribosomal protein L4/L1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 638
AciI CCGC 1 cut(s) 356
AclWI GGATC 2 cut(s) 263, 401
AcsI RAATTY 3 cut(s) 74, 465, 520
AfiI CCNNNNNNNGG 1 cut(s) 38
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 1 cut(s) 549
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 4 cut(s) 202, 277, 370, 502
AluI AGCT 4 cut(s) 202, 277, 370, 502
AlwI GGATC 2 cut(s) 263, 401
Ama87I CYCGRG 1 cut(s) 351
ApeKI GCWGC 3 cut(s) 199, 541, 660
ApoI RAATTY 3 cut(s) 74, 465, 520
Asp700I GAANNNNTTC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 485
AsuHPI GGTGA 2 cut(s) 31, 604
AsuNHI GCTAGC 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 351
AvaII GGWCC 1 cut(s) 485
BbvI GCAGC 3 cut(s) 211, 528, 672
BccI CCATC 3 cut(s) 133, 229, 473
BciVI GTATCC 1 cut(s) 39
BfaI CTAG 2 cut(s) 111, 203
BfmI CTRYAG 1 cut(s) 397
BfrI CTTAAG 1 cut(s) 287
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 4 cut(s) 200, 357, 542, 661
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 4 cut(s) 201, 358, 543, 662
Bme18I GGWCC 1 cut(s) 485
BmeT110I CYCGRG 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 485
BmsI GCATC 3 cut(s) 115, 579, 647
BmtI GCTAGC 1 cut(s) 206
Bpu1102I GCTNAGC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 488
BsaAI YACGTR 1 cut(s) 532
BsaJI CCNNGG 2 cut(s) 253, 652
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 3 cut(s) 185, 594, 677
BseDI CCNNGG 2 cut(s) 253, 652
BseGI GGATG 3 cut(s) 181, 570, 662
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 2 cut(s) 292, 615
BseNI ACTGG 3 cut(s) 185, 594, 677
BseXI GCAGC 3 cut(s) 211, 528, 672
BseYI CCCAGC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 351
BslFI GGGAC 2 cut(s) 342, 583
BslI CCNNNNNNNGG 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 342, 583
BsoBI CYCGRG 1 cut(s) 351
Bsp143I GATC 3 cut(s) 52, 268, 393
Bsp1720I GCTNAGC 1 cut(s) 624
Bsp19I CCATGG 2 cut(s) 253, 652
BspACI CCGC 1 cut(s) 356
BspCNI CTCAG 2 cut(s) 291, 616
BspOI GCTAGC 1 cut(s) 206
BspPI GGATC 2 cut(s) 263, 401
BspTI CTTAAG 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 356
BsrI ACTGG 3 cut(s) 185, 594, 677
BssECI CCNNGG 2 cut(s) 253, 652
BssMI GATC 3 cut(s) 52, 268, 393
BssNAI GTATAC 1 cut(s) 639
BssT1I CCWWGG 2 cut(s) 253, 652
Bst1107I GTATAC 1 cut(s) 639
Bst4CI ACNGT 1 cut(s) 538
BstAFI CTTAAG 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 2 cut(s) 204, 250
BstDEI CTNAG 3 cut(s) 33, 278, 624
BstDSI CCRYGG 2 cut(s) 253, 652
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 181, 570, 662
BstKTI GATC 3 cut(s) 55, 271, 396
BstMBI GATC 3 cut(s) 52, 268, 393
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 211, 528, 672
BstX2I RGATCY 1 cut(s) 393
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 1 cut(s) 393
BstZ17I GTATAC 1 cut(s) 639
BsuI GTATCC 1 cut(s) 39
BtgI CCRYGG 2 cut(s) 253, 652
BtsCI GGATG 3 cut(s) 181, 570, 662
BtsIMutI CAGTG 2 cut(s) 72, 587
Cac8I GCNNGC 2 cut(s) 204, 250
Cfr13I GGNCC 1 cut(s) 485
CviAII CATG 3 cut(s) 254, 602, 653
DdeI CTNAG 3 cut(s) 33, 278, 624
DpnI GATC 3 cut(s) 54, 270, 395
DpnII GATC 3 cut(s) 52, 268, 393
Eco130I CCWWGG 2 cut(s) 253, 652
Eco47I GGWCC 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 351
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoT14I CCWWGG 2 cut(s) 253, 652
ErhI CCWWGG 2 cut(s) 253, 652
FaeI CATG 3 cut(s) 257, 605, 656
FaiI YATR 8 cut(s) 255, 303, 582, 603, 635, 639, 654, 670
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 2 cut(s) 342, 583
FatI CATG 3 cut(s) 253, 601, 652
FblI GTMKAC 1 cut(s) 638
Fnu4HI GCNGC 4 cut(s) 200, 357, 542, 661
FokI GGATG 3 cut(s) 168, 557, 669
Fsp4HI GCNGC 4 cut(s) 200, 357, 542, 661
FspBI CTAG 2 cut(s) 111, 203
GluI GCNGC 4 cut(s) 200, 357, 542, 661
GsaI CCCAGC 1 cut(s) 277
Hin1II CATG 3 cut(s) 257, 605, 656
HindIII AAGCTT 1 cut(s) 368
HphI GGTGA 2 cut(s) 31, 604
Hpy166II GTNNAC 2 cut(s) 424, 639
Hpy188I TCNGA 3 cut(s) 156, 281, 345
Hpy188III TCNNGA 3 cut(s) 50, 80, 351
Hpy8I GTNNAC 2 cut(s) 424, 639
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 226, 555
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 2 cut(s) 322, 531
HpyCH4V TGCA 2 cut(s) 128, 660
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 3 cut(s) 33, 278, 624
HpySE526I ACGT 2 cut(s) 322, 531
Hsp92II CATG 3 cut(s) 257, 605, 656
Kzo9I GATC 3 cut(s) 52, 268, 393
LpnPI CCDG 9 cut(s) 198, 262, 287, 311, 347, 359, 458, 575, 658
Lsp1109I GCAGC 3 cut(s) 211, 528, 672
LweI GCATC 3 cut(s) 115, 579, 647
MaeI CTAG 2 cut(s) 111, 203
MaeII ACGT 2 cut(s) 322, 531
MaeIII GTNAC 2 cut(s) 67, 532
MalI GATC 3 cut(s) 54, 270, 395
MbiI CCGCTC 1 cut(s) 356
MboI GATC 3 cut(s) 52, 268, 393
MboII GAAGA 2 cut(s) 157, 472
MflI RGATCY 1 cut(s) 393
MluCI AATT 8 cut(s) 7, 60, 74, 226, 465, 520, 618, 630
MmeI TCCRAC 2 cut(s) 134, 537
MnlI CCTC 2 cut(s) 275, 376
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 2 cut(s) 288, 309
MslI CAYNNNNRTG 3 cut(s) 590, 606, 673
MspCI CTTAAG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 199
NcoI CCATGG 2 cut(s) 253, 652
NdeII GATC 3 cut(s) 52, 268, 393
NheI GCTAGC 1 cut(s) 202
NlaIII CATG 3 cut(s) 257, 605, 656
NmuCI GTSAC 2 cut(s) 67, 532
OliI CACNNNNGTG 1 cut(s) 590
PaeR7I CTCGAG 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 95
PflFI GACNNNGTC 1 cut(s) 45
PkrI GCNGC 4 cut(s) 201, 358, 543, 662
Ppu21I YACGTR 1 cut(s) 532
PspFI CCCAGC 1 cut(s) 273
PspPI GGNCC 1 cut(s) 485
PsuI RGATCY 1 cut(s) 393
PsyI GACNNNGTC 1 cut(s) 45
RseI CAYNNNNRTG 3 cut(s) 590, 606, 673
SaqAI TTAA 2 cut(s) 288, 309
SatI GCNGC 4 cut(s) 200, 357, 542, 661
Sau3AI GATC 3 cut(s) 52, 268, 393
Sau96I GGNCC 1 cut(s) 485
SetI ASST 8 cut(s) 133, 204, 279, 286, 325, 372, 504, 534
SfaNI GCATC 3 cut(s) 115, 579, 647
SfcI CTRYAG 1 cut(s) 397
Sfr274I CTCGAG 1 cut(s) 351
SinI GGWCC 1 cut(s) 485
SlaI CTCGAG 1 cut(s) 351
SmiMI CAYNNNNRTG 3 cut(s) 590, 606, 673
SmlI CTYRAG 3 cut(s) 287, 351, 503
SmoI CTYRAG 3 cut(s) 287, 351, 503
Sse9I AATT 8 cut(s) 7, 60, 74, 226, 465, 520, 618, 630
SsiI CCGC 1 cut(s) 356
SspMI CTAG 2 cut(s) 111, 203
StyI CCWWGG 2 cut(s) 253, 652
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 2 cut(s) 325, 534
TaqI TCGA 5 cut(s) 224, 244, 318, 352, 564
TaqII GACCGA 1 cut(s) 457
TasI AATT 8 cut(s) 7, 60, 74, 226, 465, 520, 618, 630
TauI GCSGC 1 cut(s) 359
Tru1I TTAA 2 cut(s) 288, 309
Tru9I TTAA 2 cut(s) 288, 309
TscAI CASTG 2 cut(s) 72, 594
TseFI GTSAC 2 cut(s) 67, 532
TseI GCWGC 3 cut(s) 199, 541, 660
Tsp45I GTSAC 2 cut(s) 67, 532
TspDTI ATGAA 2 cut(s) 99, 170
TspRI CASTG 2 cut(s) 72, 594
Tth111I GACNNNGTC 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 485
XagI CCTNNNNNAGG 1 cut(s) 36
XapI RAATTY 3 cut(s) 74, 465, 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
XhoI CTCGAG 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 2 cut(s) 111, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.