Rh5CG560900

ribosomal protein L4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002609
Physical Location & Seq
Reverse (-)
78504892 .. 78506990
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG560900.1

Sequence Viewer

Length: 831 bp
ATGGCTTTGTTCATTTCCAGAAGAATCGTACGTTCATTTGGTTCTGGTTTAGCATCAGGCCATGTTTCCAAGGGTGGATCAGTGTTTTGTGCTTGTCGAAGGCTTTCGACATTAGTCTTGACCCATGAGTCGGGTGGAGGTGCATTTTGCTCTGATTCATTGTCCTTAAAGCCTCCCGGGGCTTCGGAGTGCACTACAGTGACAAAATTTCTTGATGAAAAGAAAGGCTCCACAACTTTGGCTAGTGATGTTTTTGATGCACCTATTACGATGGATATTGCTCGTCGGATATTTTTCTTCTTTCGTTGGCTTCATCCAGTTGTGCTGTGGCAGCTAGCAAAAAGGCAACAGTGTTTTGGAATTCTTGTAAAGCCATCGAATTGGAAGGAGAGTGGTCGAGCCAGCCATGGAACATTGAGTGATCCCCAGCTCAGAGGTCTTAAGCCACGAAGTCATACTATTAAGAATGTCGAACGTCTGGGATTAAAGATTGCTCTGACATCTCGAGCGGCACAGGGAAAGCTTCTGGTTTTTGAGGATTTTGGGATCTACAGAAATAAACCCAAGAACATTGTGAACTACGTCAAGCAAAGACGGAAAAAGGAGAAAAAGAAGAAAATTCTGCTGGTGGATGGTGGTCCAATAAGTGAAAAGCTCAAGTTGGCTACTAAAAATTTACATTACGTGACTGTGCTGCCTTCAAGTGAGTTGGACGTCGACAGCATCCTTTACTATGACACACTGGTGATGTCCCGTGATGCTGTAAATAAAATTGCTGAGCAAATTATGTATACTCCAATCAACCATGGATCCAGCATGACATACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L4

Protein Analysis

276

Amino Acids

30.85

Weight (kDa)

9.96

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L4 PF00573 80 - 260 2e-21 Ribosomal protein L4/L1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 127
AatII GACGTC 1 cut(s) 717
AccBSI CCGCTC 1 cut(s) 509
AccI GTMKAC 2 cut(s) 717, 791
AciI CCGC 1 cut(s) 509
AclWI GGATC 5 cut(s) 85, 416, 554, 804, 817
AcsI RAATTY 4 cut(s) 206, 360, 618, 673
AcyI GRCGYC 1 cut(s) 714
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 130
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 1 cut(s) 702
AleI CACNNNNGTG 2 cut(s) 197, 743
AluBI AGCT 4 cut(s) 334, 430, 523, 655
AluI AGCT 4 cut(s) 334, 430, 523, 655
Alw21I GWGCWC 1 cut(s) 194
Alw44I GTGCAC 1 cut(s) 190
AlwI GGATC 5 cut(s) 85, 416, 554, 804, 817
Ama87I CYCGRG 2 cut(s) 176, 504
AoxI GGCC 1 cut(s) 58
ApaLI GTGCAC 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 331, 694
ApoI RAATTY 4 cut(s) 206, 360, 618, 673
Asp700I GAANNNNTTC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 638
AsuC2I CCSGG 2 cut(s) 177, 178
AsuHPI GGTGA 1 cut(s) 757
AsuNHI GCTAGC 1 cut(s) 334
AvaI CYCGRG 2 cut(s) 176, 504
AvaII GGWCC 1 cut(s) 638
BaeGI GKGCMC 1 cut(s) 194
BamHI GGATCC 1 cut(s) 809
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 343, 681
BccI CCATC 3 cut(s) 265, 382, 626
BcnI CCSGG 2 cut(s) 177, 178
BfaI CTAG 2 cut(s) 243, 335
BfmI CTRYAG 2 cut(s) 195, 550
BfrI CTTAAG 1 cut(s) 440
BisI GCNGC 3 cut(s) 332, 510, 695
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 3 cut(s) 333, 511, 696
Bme1390I CCNGG 2 cut(s) 177, 178
Bme18I GGWCC 1 cut(s) 638
BmeT110I CYCGRG 2 cut(s) 176, 504
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 2 cut(s) 229, 811
BmrFI CCNGG 2 cut(s) 177, 178
BmsI GCATC 4 cut(s) 62, 247, 732, 748
BmtI GCTAGC 1 cut(s) 338
BoxI GACNNNNGTC 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 2 cut(s) 177, 178
BsaAI YACGTR 1 cut(s) 685
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 5 cut(s) 69, 176, 177, 406, 805
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 3 cut(s) 317, 747, 830
BseDI CCNNGG 5 cut(s) 69, 176, 177, 406, 805
BseGI GGATG 3 cut(s) 313, 637, 723
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 2 cut(s) 445, 768
BseNI ACTGG 3 cut(s) 317, 747, 830
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 2 cut(s) 343, 681
BseYI CCCAGC 1 cut(s) 426
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 194
BsiHKCI CYCGRG 2 cut(s) 176, 504
BsiSI CCGG 1 cut(s) 177
BsiWI CGTACG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 1 cut(s) 60
BsoBI CYCGRG 2 cut(s) 176, 504
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 4 cut(s) 77, 421, 546, 809
Bsp1720I GCTNAGC 1 cut(s) 777
Bsp19I CCATGG 2 cut(s) 406, 805
BspACI CCGC 1 cut(s) 509
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 444, 769
BspLI GGNNCC 2 cut(s) 229, 811
BspOI GCTAGC 1 cut(s) 338
BspPI GGATC 5 cut(s) 85, 416, 554, 804, 817
BspTI CTTAAG 1 cut(s) 440
BsrBI CCGCTC 1 cut(s) 509
BsrI ACTGG 3 cut(s) 317, 747, 830
BssECI CCNNGG 5 cut(s) 69, 176, 177, 406, 805
BssMI GATC 4 cut(s) 77, 421, 546, 809
BssNAI GTATAC 1 cut(s) 792
BssNI GRCGYC 1 cut(s) 714
BssT1I CCWWGG 3 cut(s) 69, 406, 805
Bst1107I GTATAC 1 cut(s) 792
Bst4CI ACNGT 3 cut(s) 199, 351, 691
BstACI GRCGYC 1 cut(s) 714
BstAFI CTTAAG 1 cut(s) 440
BstBAI YACGTR 1 cut(s) 685
BstC8I GCNNGC 2 cut(s) 336, 403
BstDEI CTNAG 2 cut(s) 431, 777
BstDSI CCRYGG 2 cut(s) 406, 805
BstF5I GGATG 3 cut(s) 313, 637, 723
BstKTI GATC 4 cut(s) 80, 424, 549, 812
BstMBI GATC 4 cut(s) 77, 421, 546, 809
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstPAI GACNNNNGTC 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 175, 176
BstSFI CTRYAG 2 cut(s) 195, 550
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 343, 681
BstX2I RGATCY 2 cut(s) 546, 809
BstXI CCANNNNNNTGG 2 cut(s) 238, 381
BstYI RGATCY 2 cut(s) 546, 809
BstZ17I GTATAC 1 cut(s) 792
BsuRI GGCC 1 cut(s) 60
BtgI CCRYGG 2 cut(s) 406, 805
BtsCI GGATG 3 cut(s) 313, 637, 723
BtsIMutI CAGTG 4 cut(s) 87, 204, 356, 740
Cac8I GCNNGC 2 cut(s) 336, 403
Cfr13I GGNCC 1 cut(s) 638
Cfr9I CCCGGG 1 cut(s) 176
Csp6I GTAC 1 cut(s) 29
CviAII CATG 5 cut(s) 62, 125, 407, 806, 817
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 431, 777
DpnI GATC 4 cut(s) 79, 423, 548, 811
DpnII GATC 4 cut(s) 77, 421, 546, 809
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
Eco130I CCWWGG 3 cut(s) 69, 406, 805
Eco47I GGWCC 1 cut(s) 638
Eco88I CYCGRG 2 cut(s) 176, 504
EcoRI GAATTC 1 cut(s) 360
EcoT14I CCWWGG 3 cut(s) 69, 406, 805
ErhI CCWWGG 3 cut(s) 69, 406, 805
FaeI CATG 5 cut(s) 65, 128, 410, 809, 820
FaqI GGGAC 1 cut(s) 736
FatI CATG 5 cut(s) 61, 124, 406, 805, 816
FblI GTMKAC 2 cut(s) 717, 791
Fnu4HI GCNGC 3 cut(s) 332, 510, 695
FokI GGATG 3 cut(s) 300, 644, 710
Fsp4HI GCNGC 3 cut(s) 332, 510, 695
FspBI CTAG 2 cut(s) 243, 335
GluI GCNGC 3 cut(s) 332, 510, 695
GsaI CCCAGC 1 cut(s) 430
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 5 cut(s) 65, 128, 410, 809, 820
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 3 cut(s) 24, 128, 155
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 4 cut(s) 192, 577, 718, 792
Hpy188I TCNGA 5 cut(s) 154, 187, 288, 434, 498
Hpy188III TCNNGA 4 cut(s) 18, 118, 212, 504
Hpy8I GTNNAC 4 cut(s) 192, 577, 718, 792
Hpy99I CGWCG 2 cut(s) 288, 719
HpyAV CCTTC 3 cut(s) 93, 379, 708
HpyCH4III ACNGT 3 cut(s) 199, 351, 691
HpyCH4IV ACGT 5 cut(s) 31, 475, 582, 684, 714
HpyCH4V TGCA 3 cut(s) 143, 192, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 2 cut(s) 431, 777
HpySE526I ACGT 5 cut(s) 31, 475, 582, 684, 714
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 5 cut(s) 65, 128, 410, 809, 820
Kzo9I GATC 4 cut(s) 77, 421, 546, 809
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 2 cut(s) 343, 681
LweI GCATC 4 cut(s) 62, 247, 732, 748
MaeI CTAG 2 cut(s) 243, 335
MaeII ACGT 5 cut(s) 31, 475, 582, 684, 714
MaeIII GTNAC 2 cut(s) 199, 685
MalI GATC 4 cut(s) 79, 423, 548, 811
MbiI CCGCTC 1 cut(s) 509
MboI GATC 4 cut(s) 77, 421, 546, 809
MboII GAAGA 3 cut(s) 33, 289, 625
MflI RGATCY 2 cut(s) 546, 809
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 7 cut(s) 206, 360, 379, 618, 673, 771, 783
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 266, 690
MnlI CCTC 4 cut(s) 131, 183, 428, 529
MroXI GAANNNNTTC 1 cut(s) 103
MseI TTAA 4 cut(s) 167, 441, 462, 485
MslI CAYNNNNRTG 3 cut(s) 197, 743, 826
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 177, 178
MwoI GCNNNNNNNGC 1 cut(s) 331
NciI CCSGG 2 cut(s) 177, 178
NcoI CCATGG 2 cut(s) 406, 805
NdeII GATC 4 cut(s) 77, 421, 546, 809
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 5 cut(s) 65, 128, 410, 809, 820
NlaIV GGNNCC 2 cut(s) 229, 811
NmuCI GTSAC 2 cut(s) 199, 685
OliI CACNNNNGTG 2 cut(s) 197, 743
PaeR7I CTCGAG 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 24, 155
Pfl23II CGTACG 1 cut(s) 28
PkrI GCNGC 3 cut(s) 333, 511, 696
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 685
PshAI GACNNNNGTC 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 426
PspLI CGTACG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 229, 811
PspPI GGNCC 1 cut(s) 638
PsuI RGATCY 2 cut(s) 546, 809
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 3 cut(s) 197, 743, 826
SalI GTCGAC 1 cut(s) 716
SaqAI TTAA 4 cut(s) 167, 441, 462, 485
SatI GCNGC 3 cut(s) 332, 510, 695
Sau3AI GATC 4 cut(s) 77, 421, 546, 809
Sau96I GGNCC 1 cut(s) 638
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 177, 178
SduI GDGCHC 1 cut(s) 194
SfaNI GCATC 4 cut(s) 62, 247, 732, 748
SfcI CTRYAG 2 cut(s) 195, 550
Sfr274I CTCGAG 1 cut(s) 504
SinI GGWCC 1 cut(s) 638
SlaI CTCGAG 1 cut(s) 504
SmaI CCCGGG 1 cut(s) 178
SmiMI CAYNNNNRTG 3 cut(s) 197, 743, 826
SmlI CTYRAG 3 cut(s) 440, 504, 656
SmoI CTYRAG 3 cut(s) 440, 504, 656
Sse9I AATT 7 cut(s) 206, 360, 379, 618, 673, 771, 783
SsiI CCGC 1 cut(s) 509
SspMI CTAG 2 cut(s) 243, 335
StyD4I CCNGG 2 cut(s) 175, 176
StyI CCWWGG 3 cut(s) 69, 406, 805
TaaI ACNGT 3 cut(s) 199, 351, 691
TaiI ACGT 5 cut(s) 34, 478, 585, 687, 717
TaqI TCGA 7 cut(s) 97, 107, 377, 397, 471, 505, 717
TasI AATT 7 cut(s) 206, 360, 379, 618, 673, 771, 783
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 2 cut(s) 24, 155
Tru1I TTAA 4 cut(s) 167, 441, 462, 485
Tru9I TTAA 4 cut(s) 167, 441, 462, 485
TscAI CASTG 4 cut(s) 87, 204, 356, 747
TseFI GTSAC 2 cut(s) 199, 685
TseI GCWGC 2 cut(s) 331, 694
Tsp45I GTSAC 2 cut(s) 199, 685
TspDTI ATGAA 4 cut(s) 24, 147, 231, 302
TspGWI ACGGA 1 cut(s) 610
TspMI CCCGGG 1 cut(s) 176
TspRI CASTG 4 cut(s) 87, 204, 356, 747
Vha464I CTTAAG 1 cut(s) 440
VneI GTGCAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 4 cut(s) 206, 360, 618, 673
XcmI CCANNNNNNNNNTGG 2 cut(s) 131, 324
XhoI CTCGAG 1 cut(s) 504
XmaI CCCGGG 1 cut(s) 176
XmiI GTMKAC 2 cut(s) 717, 791
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 2 cut(s) 243, 335
ZraI GACGTC 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.