Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002609

Physical Location & Seq

Genomic Coordinates Forward (+)

3890474 .. 3893885

Gene Structure 3412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G035900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCTTTGTCGGTATCCAGAAGGCTTTTACGCTCATTTGGCTCCGTCTTAGCATCGGGCCGCTGTGACTCTCCAAGTAGTTTATATCCATCACTTCATGCTTCTCTTGGGGTTGTCTCTTCGGAAGAATTCTCAGCTGTTTCCAAGGCTGGATCGTCTTTTCTAGCCAATCGAAGGCTTTCAACTTCTATCCCATCTCCTGAATCAAGTGGAGGAGCGTTTCCCTCTAATTTATTGTCTGCAAAGCCTGTGGTTGCTTCAGAGAGTAATATAGGACTCTATCAAGACCTTGTAATTCCAGTGACAAATTTTCATAATGAAGATAAAGGCTTCACAGTTTTGGCTGGTGATGTTTTTGACGTACCTATTAGGAAGGATATCATTCATCGGGTTGTACTGTGGCAGCTCGCAAAACGGCAACAGGGAACACATTCAACAAAAACTATTAGTGAGGTTAGTGGGACTGGGAGAAAACCATGGAATCAGAAGGGTACTGGTCGAGCGAGGCAGGGATCATTGCGTAGTCCCCAGTTCAGAGGAGGTTCCACAATGCATGGTCCTAAGCCACGAAGCCATGCTTTTAAGCTAAATAAGAAGGTCCGGCGTCTAGGGCTAAAGATTGCTCTGACAGCTAGAGCAGCAGAGGGAAAGCTTCTAATTTTTGATGATTTTGAGGTCCCCACACATAAAACCAAGAATATAGCGAACTACGTCCAGCAAATGGAGGACTCCAAGAAACTTCTGCTGGTGGATGGTATCTTACCTGAAAAGCTCAAGTTGGCTACACAAAATTTACATTATGTGAACGTGCTGCCCGCAGTAGGTTTGAACGTCTACAGCATCCTGCAGCATGATACACTAGTGATGTCCCGTACTGCTGTAAATGAAATTGTTGAGCGGATGCACACTCCAATTAAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

308

Amino Acids

33.61

Weight (kDa)

10.25

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20060
fragaria_vesca	FvH4_3g01410 FvH4_3g01410 FvH4_3g43720 FvH4_3g43720 FvH4_3g43720 FvH4_3g43720 FvH4_3g43740
malus_domestica	MD05G1352400.v1.1 MD10G1326400.v1.1
prunus_persica	Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.4G015300_v2.0.a1
pyrus_communis	pycom05g31930 pycom10g27640
rosa_chinensis	RchiOBHm_Chr5g0002131 RchiOBHm_Chr5g0078391
rosa_laevigata	RLG00000030999
rosa_multiflora	Rmu_co8359539.1_g000001 Rmu_sc0004140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003890 Rroxscaffold_1G00073780
rosa_rugosa	Rorug04G0394500 Rorug04G0394500 Rorug05G0460700
rosa_samantha	Rh5AG016300 Rh5AG514400 Rh5BG019800 Rh5CG017600 Rh5CG560900 Rh5CG561400 Rh5DG017800 Rh5DG549100
rosa_wichuraiana	Rw5G001590 Rw5G047770 Rw5G047890 Rw5G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	721
AccBSI	CCGCTC	1 cut(s)	898
AccI	GTMKAC	1 cut(s)	834
AciI	CCGC	3 cut(s)	61, 816, 898
AclI	AACGTT	1 cut(s)	919
AclWI	GGATC	2 cut(s)	160, 520
AcsI	RAATTY	3 cut(s)	128, 307, 790
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	604
AfaI	GTAC	4 cut(s)	363, 396, 493, 874
AfiI	CCNNNNNNNGG	3 cut(s)	174, 721, 821
AgsI	TTSAA	3 cut(s)	183, 435, 829
AhlI	ACTAGT	1 cut(s)	859
AluBI	AGCT	6 cut(s)	137, 406, 586, 632, 652, 772
AluI	AGCT	6 cut(s)	137, 406, 586, 632, 652, 772
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	2 cut(s)	160, 520
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	4 cut(s)	403, 638, 811, 847
ApoI	RAATTY	3 cut(s)	128, 307, 790
Asp700I	GAANNNNTTC	2 cut(s)	178, 430
AspS9I	GGNCC	4 cut(s)	58, 557, 598, 676
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	3 cut(s)	557, 598, 676
BaeI	ACNNNNGTAYC	2 cut(s)	846, 879
BbvI	GCAGC	4 cut(s)	415, 650, 798, 859
BccI	CCATC	3 cut(s)	97, 202, 746
BceAI	ACGGC	1 cut(s)	431
BciVI	GTATCC	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	121
BcuI	ACTAGT	1 cut(s)	859
BfaI	CTAG	4 cut(s)	164, 608, 633, 860
BfmI	CTRYAG	2 cut(s)	835, 845
BfuI	GTATCC	1 cut(s)	25
BisI	GCNGC	5 cut(s)	61, 404, 639, 812, 848
BlsI	GCNGC	5 cut(s)	62, 405, 640, 813, 849
Bme18I	GGWCC	3 cut(s)	557, 598, 676
BmgT120I	GGNCC	4 cut(s)	58, 557, 598, 676
BmiI	GGNNCC	3 cut(s)	43, 544, 678
BmrI	ACTGGG	2 cut(s)	474, 523
BmsI	GCATC	3 cut(s)	62, 849, 891
BmuI	ACTGGG	2 cut(s)	474, 523
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	758
BsaHI	GRCGYC	1 cut(s)	604
BsaJI	CCNNGG	2 cut(s)	144, 476
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 721, 821
Bse1I	ACTGG	4 cut(s)	299, 469, 499, 529
Bse3DI	GCAATG	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	144, 476
BseGI	GGATG	3 cut(s)	757, 840, 906
BseLI	CCNNNNNNNGG	3 cut(s)	174, 721, 821
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	4 cut(s)	299, 469, 499, 529
BseRI	GAGGAG	2 cut(s)	228, 552
BseXI	GCAGC	4 cut(s)	415, 650, 798, 859
BshFI	GGCC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	601
BslFI	GGGAC	4 cut(s)	475, 510, 662, 853
BslI	CCNNNNNNNGG	3 cut(s)	174, 721, 821
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	4 cut(s)	475, 510, 662, 853
BsnI	GGCC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	152, 512
Bsp19I	CCATGG	1 cut(s)	476
BspACI	CCGC	3 cut(s)	61, 816, 898
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	43, 544, 678
BspMAI	CTGCAG	1 cut(s)	849
BspPI	GGATC	2 cut(s)	160, 520
BsrBI	CCGCTC	1 cut(s)	898
BsrDI	GCAATG	1 cut(s)	515
BsrI	ACTGG	4 cut(s)	299, 469, 499, 529
BssECI	CCNNGG	2 cut(s)	144, 476
BssMI	GATC	2 cut(s)	152, 512
BssNI	GRCGYC	1 cut(s)	604
BssT1I	CCWWGG	2 cut(s)	144, 476
Bst4CI	ACNGT	2 cut(s)	337, 399
Bst6I	CTCTTC	1 cut(s)	124
BstACI	GRCGYC	1 cut(s)	604
BstC8I	GCNNGC	2 cut(s)	408, 816
BstDEI	CTNAG	3 cut(s)	49, 133, 561
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	3 cut(s)	757, 840, 906
BstKTI	GATC	2 cut(s)	155, 515
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	152, 512
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 610, 629, 638
BstSFI	CTRYAG	2 cut(s)	835, 845
BstV1I	GCAGC	4 cut(s)	415, 650, 798, 859
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	476
BtsCI	GGATG	3 cut(s)	757, 840, 906
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	2 cut(s)	408, 816
Cfr13I	GGNCC	4 cut(s)	58, 557, 598, 676
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	4 cut(s)	362, 395, 492, 873
CspCI	CAANNNNNGTGG	2 cut(s)	231, 266
CviAII	CATG	5 cut(s)	98, 477, 554, 575, 851
CviQI	GTAC	4 cut(s)	362, 395, 492, 873
DdeI	CTNAG	3 cut(s)	49, 133, 561
DpnI	GATC	2 cut(s)	154, 514
DpnII	GATC	2 cut(s)	152, 512
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	144, 476
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	3 cut(s)	557, 598, 676
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	676
EcoRI	GAATTC	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	144, 476
EcoT22I	ATGCAT	1 cut(s)	555
ErhI	CCWWGG	2 cut(s)	144, 476
FaeI	CATG	5 cut(s)	101, 480, 557, 578, 854
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FaqI	GGGAC	4 cut(s)	475, 510, 662, 853
FatI	CATG	5 cut(s)	97, 476, 553, 574, 850
FauI	CCCGC	1 cut(s)	823
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	5 cut(s)	61, 404, 639, 812, 848
FokI	GGATG	3 cut(s)	764, 827, 913
Fsp4HI	GCNGC	5 cut(s)	61, 404, 639, 812, 848
FspBI	CTAG	4 cut(s)	164, 608, 633, 860
GluI	GCNGC	5 cut(s)	61, 404, 639, 812, 848
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	601
HgaI	GACGC	1 cut(s)	593
Hin1I	GRCGYC	1 cut(s)	604
Hin1II	CATG	5 cut(s)	101, 480, 557, 578, 854
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	5 cut(s)	68, 203, 276, 481, 728
HpaII	CCGG	1 cut(s)	601
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	805, 835
Hpy188I	TCNGA	5 cut(s)	124, 262, 486, 536, 627
Hpy188III	TCNNGA	3 cut(s)	18, 200, 284
Hpy8I	GTNNAC	2 cut(s)	805, 835
HpyAV	CCTTC	5 cut(s)	15, 168, 367, 481, 589
HpyCH4III	ACNGT	2 cut(s)	337, 399
HpyCH4IV	ACGT	5 cut(s)	360, 711, 807, 831, 919
HpyCH4V	TGCA	4 cut(s)	242, 553, 847, 904
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 610, 629, 638
HpyF3I	CTNAG	3 cut(s)	49, 133, 561
HpySE526I	ACGT	5 cut(s)	360, 711, 807, 831, 919
Hsp92I	GRCGYC	1 cut(s)	604
Hsp92II	CATG	5 cut(s)	101, 480, 557, 578, 854
Kzo9I	GATC	2 cut(s)	152, 512
LmnI	GCTCC	2 cut(s)	47, 215
Lsp1109I	GCAGC	4 cut(s)	415, 650, 798, 859
LweI	GCATC	3 cut(s)	62, 849, 891
MaeI	CTAG	4 cut(s)	164, 608, 633, 860
MaeII	ACGT	5 cut(s)	360, 711, 807, 831, 919
MaeIII	GTNAC	2 cut(s)	65, 301
MalI	GATC	2 cut(s)	154, 514
MbiI	CCGCTC	1 cut(s)	898
MboI	GATC	2 cut(s)	152, 512
MboII	GAAGA	3 cut(s)	111, 137, 332
MluCI	AATT	8 cut(s)	128, 229, 294, 307, 657, 790, 888, 912
MlyI	GAGTC	3 cut(s)	62, 270, 722
MnlI	CCTC	9 cut(s)	206, 235, 445, 498, 530, 533, 637, 667, 718
Mph1103I	ATGCAT	1 cut(s)	555
MroXI	GAANNNNTTC	2 cut(s)	178, 430
MseI	TTAA	2 cut(s)	582, 915
MspA1I	CMGCKG	2 cut(s)	63, 137
MspI	CCGG	1 cut(s)	601
MwoI	GCNNNNNNNGC	4 cut(s)	39, 610, 629, 638
NcoI	CCATGG	1 cut(s)	476
NdeII	GATC	2 cut(s)	152, 512
NlaIII	CATG	5 cut(s)	101, 480, 557, 578, 854
NlaIV	GGNNCC	3 cut(s)	43, 544, 678
NmuCI	GTSAC	2 cut(s)	65, 301
NsiI	ATGCAT	1 cut(s)	555
PdmI	GAANNNNTTC	2 cut(s)	178, 430
PfeI	GAWTC	2 cut(s)	203, 481
PflMI	CCANNNNNTGG	1 cut(s)	721
PkrI	GCNGC	5 cut(s)	62, 405, 640, 813, 849
PleI	GAGTC	3 cut(s)	62, 270, 722
PpsI	GAGTC	3 cut(s)	62, 270, 722
PpuMI	RGGWCCY	1 cut(s)	676
Psp1406I	AACGTT	1 cut(s)	919
Psp5II	RGGWCCY	1 cut(s)	676
PspN4I	GGNNCC	3 cut(s)	43, 544, 678
PspPI	GGNCC	4 cut(s)	58, 557, 598, 676
PspPPI	RGGWCCY	1 cut(s)	676
PstI	CTGCAG	1 cut(s)	849
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	4 cut(s)	363, 396, 493, 874
RsaNI	GTAC	4 cut(s)	362, 395, 492, 873
SaqAI	TTAA	2 cut(s)	582, 915
SatI	GCNGC	5 cut(s)	61, 404, 639, 812, 848
Sau3AI	GATC	2 cut(s)	152, 512
Sau96I	GGNCC	4 cut(s)	58, 557, 598, 676
SchI	GAGTC	3 cut(s)	62, 270, 722
SfaNI	GCATC	3 cut(s)	62, 849, 891
SfcI	CTRYAG	2 cut(s)	835, 845
SinI	GGWCC	3 cut(s)	557, 598, 676
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
SpeI	ACTAGT	1 cut(s)	859
Sse9I	AATT	8 cut(s)	128, 229, 294, 307, 657, 790, 888, 912
SsiI	CCGC	3 cut(s)	61, 816, 898
SspMI	CTAG	4 cut(s)	164, 608, 633, 860
StyI	CCWWGG	2 cut(s)	144, 476
TaaI	ACNGT	2 cut(s)	337, 399
TaiI	ACGT	5 cut(s)	363, 714, 810, 834, 922
TaqI	TCGA	2 cut(s)	172, 499
TasI	AATT	8 cut(s)	128, 229, 294, 307, 657, 790, 888, 912
TatI	WGTACW	1 cut(s)	394
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	203, 481
Tru1I	TTAA	2 cut(s)	582, 915
Tru9I	TTAA	2 cut(s)	582, 915
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	2 cut(s)	65, 301
TseI	GCWGC	4 cut(s)	403, 638, 811, 847
Tsp45I	GTSAC	2 cut(s)	65, 301
TspDTI	ATGAA	5 cut(s)	86, 302, 333, 374, 900
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	306
Van91I	CCANNNNNTGG	1 cut(s)	721
VpaK11BI	GGWCC	3 cut(s)	557, 598, 676
XapI	RAATTY	3 cut(s)	128, 307, 790
XmiI	GTMKAC	1 cut(s)	834
XmnI	GAANNNNTTC	2 cut(s)	178, 430
XspI	CTAG	4 cut(s)	164, 608, 633, 860
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.