Rw5G047940

ribosomal protein L4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002609
Physical Location & Seq
Reverse (-)
83109175 .. 83111373
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G047940.1

Sequence Viewer

Length: 831 bp
ATGGCTTTGTTCATTTCCAGAAGAATCGTACGTTCATTTGGTTCTGTTTCTTTTACCAGTTTATATTGTAATAATCAGATCAATGATAGTGGATCAGTGTTTTGTGCTTGTCGAATGCTTTCGACTTCAGTCTTGACCCATGAGTCGAGTGAAGGTGCATTTTGCTCTGATTCATTGTGCTTAAAGCCTCCCGGGGCTTCGGAGTGCACTACAGGACTTTGTCTTGATCTTGTAATTTCAGTGACAAAATTTCTTGATGAAAAGAAAGGCTTCACAACTTTGGCTAGTGATGTTTTGGATGCACCTATTACGATGGATATTGCTCGTCGGATATTTTTCTTCTTTCGTTGGCTTCATCCAGTTGTGCTGTGGCAGCTAGCAAAAAGGCAACAGTGGAAAGCCAGCCATGGAACATTGAGTGATCCCCAGCTCAGAGGTCTTAAGCCACGAAGTCATACTATTAAGAATGTCGAACGTCTGGGACTAAAGATTGCTCTGACATCTCGAGCGGCACAAGGAAAGCTTCTGGTTTTTGAGGATTTTGGGATCTACAGAAATAAACCCAAGAACATTGTGAACTACATCAAGCAAAGACCGAAAGAGGAGAAAAAGAAGAAAATTCTGCTGGTAGATGGTGGTCCAATAAGTGAAAAGCTCAAGTTGGCTACTAAAAATTTACATTACGTGACTGTGCTGCCTTCAAGTGAGTTGGACGTCGACAGCATCCTTTACTATGACACACTGGTGATGTCCCATGATGATGTAAATAAAATTGCTGAGCAAATTATGTATACTCCAATCAACCATGGATGCAGCACAACATACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L4

Protein Analysis

276

Amino Acids

31.13

Weight (kDa)

9.2

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L4 PF00573 148 - 260 4.9e-17 Ribosomal protein L4/L1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 142
AatII GACGTC 1 cut(s) 717
AccBSI CCGCTC 1 cut(s) 509
AccI GTMKAC 2 cut(s) 717, 791
AciI CCGC 1 cut(s) 509
AclWI GGATC 3 cut(s) 100, 416, 554
AcsI RAATTY 3 cut(s) 248, 618, 673
AcuI CTGAAG 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 714
AfaI GTAC 1 cut(s) 30
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 1 cut(s) 702
AleI CACNNNNGTG 1 cut(s) 743
AluBI AGCT 4 cut(s) 376, 430, 523, 655
AluI AGCT 4 cut(s) 376, 430, 523, 655
Alw21I GWGCWC 1 cut(s) 209
Alw44I GTGCAC 1 cut(s) 205
AlwI GGATC 3 cut(s) 100, 416, 554
Ama87I CYCGRG 2 cut(s) 191, 504
ApaLI GTGCAC 1 cut(s) 205
ApeKI GCWGC 3 cut(s) 373, 694, 813
ApoI RAATTY 3 cut(s) 248, 618, 673
Asp700I GAANNNNTTC 2 cut(s) 118, 269
AspS9I GGNCC 1 cut(s) 638
AsuC2I CCSGG 2 cut(s) 192, 193
AsuHPI GGTGA 1 cut(s) 757
AsuNHI GCTAGC 1 cut(s) 376
AvaI CYCGRG 2 cut(s) 191, 504
AvaII GGWCC 1 cut(s) 638
BaeGI GKGCMC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 3 cut(s) 385, 681, 825
BccI CCATC 2 cut(s) 307, 626
BcnI CCSGG 2 cut(s) 192, 193
BfaI CTAG 2 cut(s) 285, 377
BfmI CTRYAG 2 cut(s) 210, 550
BfrI CTTAAG 1 cut(s) 440
BisI GCNGC 4 cut(s) 374, 510, 695, 814
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 4 cut(s) 375, 511, 696, 815
Bme1390I CCNGG 2 cut(s) 192, 193
Bme18I GGWCC 1 cut(s) 638
BmeT110I CYCGRG 2 cut(s) 191, 504
BmgT120I GGNCC 1 cut(s) 638
BmrFI CCNGG 2 cut(s) 192, 193
BmsI GCATC 3 cut(s) 289, 732, 800
BmtI GCTAGC 1 cut(s) 380
BoxI GACNNNNGTC 1 cut(s) 128
Bpu1102I GCTNAGC 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 2 cut(s) 192, 193
BsaAI YACGTR 1 cut(s) 685
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 4 cut(s) 191, 192, 406, 805
Bse1I ACTGG 4 cut(s) 57, 359, 747, 830
BseDI CCNNGG 4 cut(s) 191, 192, 406, 805
BseGI GGATG 4 cut(s) 304, 355, 723, 815
BseMII CTCAG 2 cut(s) 445, 768
BseNI ACTGG 4 cut(s) 57, 359, 747, 830
BseRI GAGGAG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 3 cut(s) 385, 681, 825
BseYI CCCAGC 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 2 cut(s) 191, 504
BsiSI CCGG 1 cut(s) 192
BsiWI CGTACG 1 cut(s) 28
BslFI GGGAC 2 cut(s) 495, 736
BsmFI GGGAC 2 cut(s) 495, 736
BsmI GAATGC 1 cut(s) 120
BsoBI CYCGRG 2 cut(s) 191, 504
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 5 cut(s) 78, 92, 226, 421, 546
Bsp1720I GCTNAGC 1 cut(s) 777
Bsp19I CCATGG 2 cut(s) 406, 805
BspACI CCGC 1 cut(s) 509
BspCNI CTCAG 2 cut(s) 444, 769
BspOI GCTAGC 1 cut(s) 380
BspPI GGATC 3 cut(s) 100, 416, 554
BspTI CTTAAG 1 cut(s) 440
BsrBI CCGCTC 1 cut(s) 509
BsrI ACTGG 4 cut(s) 57, 359, 747, 830
BssECI CCNNGG 4 cut(s) 191, 192, 406, 805
BssMI GATC 5 cut(s) 78, 92, 226, 421, 546
BssNAI GTATAC 1 cut(s) 792
BssNI GRCGYC 1 cut(s) 714
BssT1I CCWWGG 2 cut(s) 406, 805
Bst1107I GTATAC 1 cut(s) 792
Bst4CI ACNGT 2 cut(s) 393, 691
BstACI GRCGYC 1 cut(s) 714
BstAFI CTTAAG 1 cut(s) 440
BstBAI YACGTR 1 cut(s) 685
BstC8I GCNNGC 2 cut(s) 378, 403
BstDEI CTNAG 2 cut(s) 431, 777
BstDSI CCRYGG 2 cut(s) 406, 805
BstF5I GGATG 4 cut(s) 304, 355, 723, 815
BstKTI GATC 5 cut(s) 81, 95, 229, 424, 549
BstMBI GATC 5 cut(s) 78, 92, 226, 421, 546
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstPAI GACNNNNGTC 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 190, 191
BstSFI CTRYAG 2 cut(s) 210, 550
BstSLI GKGCMC 1 cut(s) 209
BstV1I GCAGC 3 cut(s) 385, 681, 825
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BstZ17I GTATAC 1 cut(s) 792
BtgI CCRYGG 2 cut(s) 406, 805
BtsCI GGATG 4 cut(s) 304, 355, 723, 815
BtsIMutI CAGTG 4 cut(s) 102, 246, 398, 740
Cac8I GCNNGC 2 cut(s) 378, 403
Cfr13I GGNCC 1 cut(s) 638
Cfr9I CCCGGG 1 cut(s) 191
Csp6I GTAC 1 cut(s) 29
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 4 cut(s) 140, 407, 755, 806
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 431, 777
DpnI GATC 5 cut(s) 80, 94, 228, 423, 548
DpnII GATC 5 cut(s) 78, 92, 226, 421, 546
DrdI GACNNNNNNGTC 1 cut(s) 142
DseDI GACNNNNNNGTC 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 406, 805
Eco47I GGWCC 1 cut(s) 638
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 2 cut(s) 191, 504
EcoT14I CCWWGG 2 cut(s) 406, 805
ErhI CCWWGG 2 cut(s) 406, 805
FaeI CATG 4 cut(s) 143, 410, 758, 809
FalI AAGNNNNNCTT 4 cut(s) 254, 286, 507, 539
FaqI GGGAC 2 cut(s) 495, 736
FatI CATG 4 cut(s) 139, 406, 754, 805
FblI GTMKAC 2 cut(s) 717, 791
Fnu4HI GCNGC 4 cut(s) 374, 510, 695, 814
FokI GGATG 4 cut(s) 311, 342, 710, 822
Fsp4HI GCNGC 4 cut(s) 374, 510, 695, 814
FspBI CTAG 2 cut(s) 285, 377
GluI GCNGC 4 cut(s) 374, 510, 695, 814
GsaI CCCAGC 1 cut(s) 430
HapII CCGG 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 4 cut(s) 143, 410, 758, 809
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 3 cut(s) 24, 143, 170
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 4 cut(s) 207, 577, 718, 792
Hpy188I TCNGA 6 cut(s) 78, 169, 202, 330, 434, 498
Hpy188III TCNNGA 5 cut(s) 18, 133, 224, 254, 504
Hpy8I GTNNAC 4 cut(s) 207, 577, 718, 792
Hpy99I CGWCG 2 cut(s) 330, 719
HpyAV CCTTC 2 cut(s) 146, 708
HpyCH4III ACNGT 2 cut(s) 393, 691
HpyCH4IV ACGT 4 cut(s) 31, 475, 684, 714
HpyCH4V TGCA 4 cut(s) 158, 207, 302, 813
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 2 cut(s) 431, 777
HpySE526I ACGT 4 cut(s) 31, 475, 684, 714
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 4 cut(s) 143, 410, 758, 809
Kzo9I GATC 5 cut(s) 78, 92, 226, 421, 546
Lsp1109I GCAGC 3 cut(s) 385, 681, 825
LweI GCATC 3 cut(s) 289, 732, 800
MaeI CTAG 2 cut(s) 285, 377
MaeII ACGT 4 cut(s) 31, 475, 684, 714
MaeIII GTNAC 2 cut(s) 241, 685
MalI GATC 5 cut(s) 80, 94, 228, 423, 548
MbiI CCGCTC 1 cut(s) 509
MboI GATC 5 cut(s) 78, 92, 226, 421, 546
MboII GAAGA 3 cut(s) 33, 331, 625
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 6 cut(s) 234, 248, 618, 673, 771, 783
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 2 cut(s) 308, 690
MnlI CCTC 4 cut(s) 198, 428, 529, 595
MroXI GAANNNNTTC 2 cut(s) 118, 269
MseI TTAA 3 cut(s) 182, 441, 462
MslI CAYNNNNRTG 3 cut(s) 743, 759, 826
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 192, 193
Mva1269I GAATGC 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 373
NciI CCSGG 2 cut(s) 192, 193
NcoI CCATGG 2 cut(s) 406, 805
NdeII GATC 5 cut(s) 78, 92, 226, 421, 546
NheI GCTAGC 1 cut(s) 376
NlaIII CATG 4 cut(s) 143, 410, 758, 809
NmuCI GTSAC 2 cut(s) 241, 685
OliI CACNNNNGTG 1 cut(s) 743
PaeR7I CTCGAG 1 cut(s) 504
PctI GAATGC 1 cut(s) 120
PdmI GAANNNNTTC 2 cut(s) 118, 269
PfeI GAWTC 2 cut(s) 24, 170
Pfl23II CGTACG 1 cut(s) 28
PflFI GACNNNGTC 1 cut(s) 219
PkrI GCNGC 4 cut(s) 375, 511, 696, 815
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 685
PshAI GACNNNNGTC 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 426
PspLI CGTACG 1 cut(s) 28
PspPI GGNCC 1 cut(s) 638
PsuI RGATCY 1 cut(s) 546
PsyI GACNNNGTC 1 cut(s) 219
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 3 cut(s) 743, 759, 826
SalI GTCGAC 1 cut(s) 716
SaqAI TTAA 3 cut(s) 182, 441, 462
SatI GCNGC 4 cut(s) 374, 510, 695, 814
Sau3AI GATC 5 cut(s) 78, 92, 226, 421, 546
Sau96I GGNCC 1 cut(s) 638
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 192, 193
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 3 cut(s) 289, 732, 800
SfcI CTRYAG 2 cut(s) 210, 550
Sfr274I CTCGAG 1 cut(s) 504
SinI GGWCC 1 cut(s) 638
SlaI CTCGAG 1 cut(s) 504
SmaI CCCGGG 1 cut(s) 193
SmiMI CAYNNNNRTG 3 cut(s) 743, 759, 826
SmlI CTYRAG 3 cut(s) 440, 504, 656
SmoI CTYRAG 3 cut(s) 440, 504, 656
Sse9I AATT 6 cut(s) 234, 248, 618, 673, 771, 783
SsiI CCGC 1 cut(s) 509
SspMI CTAG 2 cut(s) 285, 377
StyD4I CCNGG 2 cut(s) 190, 191
StyI CCWWGG 2 cut(s) 406, 805
TaaI ACNGT 2 cut(s) 393, 691
TaiI ACGT 4 cut(s) 34, 478, 687, 717
TaqI TCGA 6 cut(s) 112, 122, 146, 471, 505, 717
TaqII GACCGA 1 cut(s) 610
TasI AATT 6 cut(s) 234, 248, 618, 673, 771, 783
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 2 cut(s) 24, 170
Tru1I TTAA 3 cut(s) 182, 441, 462
Tru9I TTAA 3 cut(s) 182, 441, 462
TscAI CASTG 4 cut(s) 102, 246, 398, 747
TseFI GTSAC 2 cut(s) 241, 685
TseI GCWGC 3 cut(s) 373, 694, 813
Tsp45I GTSAC 2 cut(s) 241, 685
TspDTI ATGAA 4 cut(s) 24, 162, 273, 344
TspMI CCCGGG 1 cut(s) 191
TspRI CASTG 4 cut(s) 102, 246, 398, 747
Tth111I GACNNNGTC 1 cut(s) 219
Vha464I CTTAAG 1 cut(s) 440
VneI GTGCAC 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 3 cut(s) 248, 618, 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 366
XhoI CTCGAG 1 cut(s) 504
XmaI CCCGGG 1 cut(s) 191
XmiI GTMKAC 2 cut(s) 717, 791
XmnI GAANNNNTTC 2 cut(s) 118, 269
XspI CTAG 2 cut(s) 285, 377
ZraI GACGTC 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.