Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002609

Physical Location & Seq

Genomic Coordinates Reverse (-)

31459882 .. 31462591

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g31930.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCTTTGTCGGTATCCAGAAGGCTTTTGCGTTCATTTGGTTCTGTATTGGCATCAGGCCGCTGTGATTCTTCAACTAATTTATATCCATCATCATTTCGTGCTTCTCTCGATTTTTGCGGCCATGCTCCCGGGGATACCTTACTTTCTGGAGAATTGTCAGCTGTTTTCAAGCCTGGATCATTTTTTCTAGCAAATCGAAGGCTTTCAACCTCCAACCCAACTCCCGAATCAAGTGGAGGTGCCTTTCCCTCTAATTTATTGTCAGCAAAGCCTGTGGTTGCATCAGAGCGTTCTATAGGGCTCTGTCAAGACCTTGTGATTCCAGTGACAAATTTTCATTATGAAGATAAAGGCTTCACAGTTTTGGCTGGTGATGTTTTCGATGTACCTATTAGGAAGGATATTATTCATCGGGTTGTCCTATGGCAGCTAGCAAAACGGCAACAGGGAACACATTCAACAAAAACTATTAGTGAGGTTAGTGGGACTGGGAGAAAGCCATGGAATCAGAAGGGTACTGGTCGAGCGAGGCATGGAACATTACGTGGTCCCCAGTTCAGAGGAGGATGCACAATGCATGGTCCTAAGCCGCGAAGCCATGAAATTAAGCTGAATAAGAAGGTTCGGCGTCTAGGACTAAAGATTGCTCTGACAGCTCAAGCAGCAGAGGGAAAGCTTCTGGTTTTTGAAGATTTTGAGGTCCCCACGCATAAAACCAAGAATATTGTAAACTACGTCCAGCAAATGGAGGGCTCCAAGAAATTTTTGCTGGTGGATGGTACTAAAACAGAGGATGGTAAACAAATGTTACCCGAAAAGCTCAAGTTGGCTACACAAAATTTGCATTATGTGAACGTGCTGCCCGCAATTGGTTTGAACGTCTACAGCATCCTGCAGCATGACACACTGGTGATGACCCGAGCAGCTGTAAATGAAATTGTCAAGCGGATGCACACTCCAATCAACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

325

Amino Acids

35.65

Weight (kDa)

10.07

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20060
fragaria_vesca	FvH4_3g01410 FvH4_3g01410 FvH4_3g43720 FvH4_3g43720 FvH4_3g43720 FvH4_3g43720 FvH4_3g43740
malus_domestica	MD05G1352400.v1.1 MD10G1326400.v1.1
prunus_persica	Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.2G035900_v2.0.a1 Prupe.4G015300_v2.0.a1
pyrus_communis	pycom05g31930 pycom10g27640
rosa_chinensis	RchiOBHm_Chr5g0002131 RchiOBHm_Chr5g0078391
rosa_laevigata	RLG00000030999
rosa_multiflora	Rmu_co8359539.1_g000001 Rmu_sc0004140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003890 Rroxscaffold_1G00073780
rosa_rugosa	Rorug04G0394500 Rorug04G0394500 Rorug05G0460700
rosa_samantha	Rh5AG016300 Rh5AG514400 Rh5BG019800 Rh5CG017600 Rh5CG560900 Rh5CG561400 Rh5DG017800 Rh5DG549100
rosa_wichuraiana	Rw5G001590 Rw5G047770 Rw5G047890 Rw5G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	748
AccI	GTMKAC	1 cut(s)	885
AccII	CGCG	1 cut(s)	595
AciI	CCGC	5 cut(s)	61, 120, 593, 867, 949
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	3 cut(s)	334, 764, 841
AcyI	GRCGYC	1 cut(s)	631
AfaI	GTAC	3 cut(s)	390, 520, 784
AfiI	CCNNNNNNNGG	2 cut(s)	748, 872
AgsI	TTSAA	6 cut(s)	75, 172, 210, 462, 692, 880
AjnI	CCWGG	1 cut(s)	175
AleI	CACNNNNGTG	1 cut(s)	911
AluBI	AGCT	7 cut(s)	164, 433, 613, 659, 679, 823, 929
AluI	AGCT	7 cut(s)	164, 433, 613, 659, 679, 823, 929
AlwI	GGATC	1 cut(s)	187
Ama87I	CYCGRG	2 cut(s)	131, 921
AoxI	GGCC	2 cut(s)	58, 121
ApeKI	GCWGC	5 cut(s)	430, 665, 862, 898, 926
ApoI	RAATTY	3 cut(s)	334, 764, 841
Asp700I	GAANNNNTTC	2 cut(s)	205, 457
AspS9I	GGNCC	3 cut(s)	551, 584, 703
AsuC2I	CCSGG	2 cut(s)	132, 133
AsuHPI	GGTGA	2 cut(s)	386, 925
AsuNHI	GCTAGC	1 cut(s)	433
AvaI	CYCGRG	2 cut(s)	131, 921
AvaII	GGWCC	3 cut(s)	551, 584, 703
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	2 cut(s)	306, 758
BbvI	GCAGC	5 cut(s)	442, 677, 849, 910, 938
BccI	CCATC	3 cut(s)	97, 773, 791
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	177
BciVI	GTATCC	2 cut(s)	25, 130
BcnI	CCSGG	2 cut(s)	132, 133
BfaI	CTAG	3 cut(s)	191, 434, 635
BfmI	CTRYAG	3 cut(s)	297, 886, 896
BfuI	GTATCC	2 cut(s)	25, 130
BisI	GCNGC	8 cut(s)	61, 121, 431, 593, 666, 863, 899, 927
BlsI	GCNGC	8 cut(s)	62, 122, 432, 594, 667, 864, 900, 928
Bme1390I	CCNGG	3 cut(s)	132, 133, 177
Bme18I	GGWCC	3 cut(s)	551, 584, 703
BmeT110I	CYCGRG	2 cut(s)	131, 921
BmgT120I	GGNCC	3 cut(s)	551, 584, 703
BmiI	GGNNCC	4 cut(s)	244, 553, 705, 757
BmrFI	CCNGG	3 cut(s)	132, 133, 177
BmrI	ACTGGG	2 cut(s)	501, 550
BmsI	GCATC	5 cut(s)	62, 293, 560, 900, 942
BmtI	GCTAGC	1 cut(s)	437
BmuI	ACTGGG	2 cut(s)	501, 550
BpmI	CTGGAG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	2 cut(s)	645, 809
BpuMI	CCSGG	2 cut(s)	132, 133
BsaAI	YACGTR	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	631
BsaJI	CCNNGG	3 cut(s)	131, 132, 503
Bsc4I	CCNNNNNNNGG	2 cut(s)	748, 872
Bse1I	ACTGG	5 cut(s)	326, 496, 526, 556, 915
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	131, 132, 503
BseGI	GGATG	5 cut(s)	575, 784, 802, 891, 957
BseLI	CCNNNNNNNGG	2 cut(s)	748, 872
BseNI	ACTGG	5 cut(s)	326, 496, 526, 556, 915
BseRI	GAGGAG	1 cut(s)	579
BseXI	GCAGC	5 cut(s)	442, 677, 849, 910, 938
Bsh1236I	CGCG	1 cut(s)	595
BshFI	GGCC	2 cut(s)	60, 123
BshNI	GGYRCC	1 cut(s)	242
BsiHKCI	CYCGRG	2 cut(s)	131, 921
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	3 cut(s)	502, 537, 689
BslI	CCNNNNNNNGG	2 cut(s)	748, 872
BsmFI	GGGAC	3 cut(s)	502, 537, 689
BsnI	GGCC	2 cut(s)	60, 123
BsoBI	CYCGRG	2 cut(s)	131, 921
Bsp1286I	GDGCHC	2 cut(s)	306, 758
Bsp143I	GATC	1 cut(s)	179
Bsp19I	CCATGG	1 cut(s)	503
BspACI	CCGC	5 cut(s)	61, 120, 593, 867, 949
BspANI	GGCC	2 cut(s)	60, 123
BspFNI	CGCG	1 cut(s)	595
BspLI	GGNNCC	4 cut(s)	244, 553, 705, 757
BspMAI	CTGCAG	1 cut(s)	900
BspOI	GCTAGC	1 cut(s)	437
BspPI	GGATC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	242
BsrI	ACTGG	5 cut(s)	326, 496, 526, 556, 915
BssECI	CCNNGG	3 cut(s)	131, 132, 503
BssMI	GATC	1 cut(s)	179
BssNI	GRCGYC	1 cut(s)	631
BssT1I	CCWWGG	1 cut(s)	503
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	364, 971
BstACI	GRCGYC	1 cut(s)	631
BstBAI	YACGTR	1 cut(s)	548
BstC8I	GCNNGC	2 cut(s)	435, 867
BstDEI	CTNAG	1 cut(s)	588
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	5 cut(s)	575, 784, 802, 891, 957
BstFNI	CGCG	1 cut(s)	595
BstKTI	GATC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	2 cut(s)	656, 665
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	3 cut(s)	130, 131, 175
BstSFI	CTRYAG	3 cut(s)	297, 886, 896
BstUI	CGCG	1 cut(s)	595
BstV1I	GCAGC	5 cut(s)	442, 677, 849, 910, 938
BsuI	GTATCC	2 cut(s)	25, 130
BsuRI	GGCC	2 cut(s)	60, 123
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	5 cut(s)	575, 784, 802, 891, 957
BtsIMutI	CAGTG	2 cut(s)	333, 908
Cac8I	GCNNGC	2 cut(s)	435, 867
Cfr13I	GGNCC	3 cut(s)	551, 584, 703
Cfr9I	CCCGGG	1 cut(s)	131
CseI	GACGC	1 cut(s)	620
Csp6I	GTAC	3 cut(s)	389, 519, 783
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	6 cut(s)	125, 504, 536, 581, 602, 902
CviQI	GTAC	3 cut(s)	389, 519, 783
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	1 cut(s)	181
DpnII	GATC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	503
Eco24I	GRGCYC	2 cut(s)	306, 758
Eco47I	GGWCC	3 cut(s)	551, 584, 703
Eco88I	CYCGRG	2 cut(s)	131, 921
EcoO109I	RGGNCCY	1 cut(s)	703
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	503
EcoT22I	ATGCAT	1 cut(s)	582
EcoT38I	GRGCYC	2 cut(s)	306, 758
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	6 cut(s)	128, 507, 539, 584, 605, 905
FaqI	GGGAC	3 cut(s)	502, 537, 689
FatI	CATG	6 cut(s)	124, 503, 535, 580, 601, 901
FauI	CCCGC	1 cut(s)	874
FblI	GTMKAC	1 cut(s)	885
Fnu4HI	GCNGC	8 cut(s)	61, 121, 431, 593, 666, 863, 899, 927
FokI	GGATG	5 cut(s)	582, 791, 809, 878, 964
FriOI	GRGCYC	2 cut(s)	306, 758
Fsp4HI	GCNGC	8 cut(s)	61, 121, 431, 593, 666, 863, 899, 927
FspBI	CTAG	3 cut(s)	191, 434, 635
GluI	GCNGC	8 cut(s)	61, 121, 431, 593, 666, 863, 899, 927
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	60, 123
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	620
Hin1I	GRCGYC	1 cut(s)	631
Hin1II	CATG	6 cut(s)	128, 507, 539, 584, 605, 905
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	4 cut(s)	68, 230, 322, 508
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	386, 925
Hpy166II	GTNNAC	4 cut(s)	733, 803, 856, 886
Hpy188I	TCNGA	4 cut(s)	289, 513, 563, 654
Hpy188III	TCNNGA	5 cut(s)	18, 110, 150, 227, 311
Hpy8I	GTNNAC	4 cut(s)	733, 803, 856, 886
HpyAV	CCTTC	5 cut(s)	15, 195, 394, 508, 616
HpyCH4III	ACNGT	2 cut(s)	364, 971
HpyCH4IV	ACGT	4 cut(s)	547, 738, 858, 882
HpyCH4V	TGCA	6 cut(s)	284, 573, 580, 847, 898, 955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	656, 665
HpyF3I	CTNAG	1 cut(s)	588
HpySE526I	ACGT	4 cut(s)	547, 738, 858, 882
Hsp92I	GRCGYC	1 cut(s)	631
Hsp92II	CATG	6 cut(s)	128, 507, 539, 584, 605, 905
Kzo9I	GATC	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	133, 761
Lsp1109I	GCAGC	5 cut(s)	442, 677, 849, 910, 938
LweI	GCATC	5 cut(s)	62, 293, 560, 900, 942
MaeI	CTAG	3 cut(s)	191, 434, 635
MaeII	ACGT	4 cut(s)	547, 738, 858, 882
MaeIII	GTNAC	2 cut(s)	328, 810
MalI	GATC	1 cut(s)	181
MboI	GATC	1 cut(s)	179
MboII	GAAGA	3 cut(s)	63, 359, 704
MfeI	CAATTG	1 cut(s)	870
MhlI	GDGCHC	2 cut(s)	306, 758
MluCI	AATT	9 cut(s)	79, 155, 256, 334, 606, 764, 841, 870, 939
MmeI	TCCRAC	1 cut(s)	240
Mph1103I	ATGCAT	1 cut(s)	582
MroXI	GAANNNNTTC	2 cut(s)	205, 457
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	911
MspA1I	CMGCKG	3 cut(s)	63, 164, 929
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	132, 133, 177
MunI	CAATTG	1 cut(s)	870
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	595
MwoI	GCNNNNNNNGC	2 cut(s)	656, 665
NciI	CCSGG	2 cut(s)	132, 133
NcoI	CCATGG	1 cut(s)	503
NdeII	GATC	1 cut(s)	179
NheI	GCTAGC	1 cut(s)	433
NlaIII	CATG	6 cut(s)	128, 507, 539, 584, 605, 905
NlaIV	GGNNCC	4 cut(s)	244, 553, 705, 757
NmuCI	GTSAC	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	582
OliI	CACNNNNGTG	1 cut(s)	911
PdmI	GAANNNNTTC	2 cut(s)	205, 457
PfeI	GAWTC	4 cut(s)	68, 230, 322, 508
PflMI	CCANNNNNTGG	1 cut(s)	748
PkrI	GCNGC	8 cut(s)	62, 122, 432, 594, 667, 864, 900, 928
Ppu21I	YACGTR	1 cut(s)	548
PpuMI	RGGWCCY	1 cut(s)	703
Psp5II	RGGWCCY	1 cut(s)	703
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	4 cut(s)	244, 553, 705, 757
PspPI	GGNCC	3 cut(s)	551, 584, 703
PspPPI	RGGWCCY	1 cut(s)	703
PstI	CTGCAG	1 cut(s)	900
PvuII	CAGCTG	2 cut(s)	164, 929
RsaI	GTAC	3 cut(s)	390, 520, 784
RsaNI	GTAC	3 cut(s)	389, 519, 783
RseI	CAYNNNNRTG	1 cut(s)	911
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	8 cut(s)	61, 121, 431, 593, 666, 863, 899, 927
Sau3AI	GATC	1 cut(s)	179
Sau96I	GGNCC	3 cut(s)	551, 584, 703
ScrFI	CCNGG	3 cut(s)	132, 133, 177
SduI	GDGCHC	2 cut(s)	306, 758
SfaNI	GCATC	5 cut(s)	62, 293, 560, 900, 942
SfcI	CTRYAG	3 cut(s)	297, 886, 896
SinI	GGWCC	3 cut(s)	551, 584, 703
SmaI	CCCGGG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	911
SmlI	CTYRAG	2 cut(s)	660, 824
SmoI	CTYRAG	2 cut(s)	660, 824
Sse9I	AATT	9 cut(s)	79, 155, 256, 334, 606, 764, 841, 870, 939
SsiI	CCGC	5 cut(s)	61, 120, 593, 867, 949
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	3 cut(s)	191, 434, 635
StyD4I	CCNGG	3 cut(s)	130, 131, 175
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	2 cut(s)	364, 971
TaiI	ACGT	4 cut(s)	550, 741, 861, 885
TaqI	TCGA	4 cut(s)	111, 199, 384, 526
TasI	AATT	9 cut(s)	79, 155, 256, 334, 606, 764, 841, 870, 939
TauI	GCSGC	3 cut(s)	63, 123, 595
TfiI	GAWTC	4 cut(s)	68, 230, 322, 508
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	2 cut(s)	333, 915
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	5 cut(s)	430, 665, 862, 898, 926
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	6 cut(s)	24, 329, 360, 401, 618, 951
TspMI	CCCGGG	1 cut(s)	131
TspRI	CASTG	2 cut(s)	333, 915
Van91I	CCANNNNNTGG	1 cut(s)	748
VpaK11BI	GGWCC	3 cut(s)	551, 584, 703
XapI	RAATTY	3 cut(s)	334, 764, 841
XmaI	CCCGGG	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	885
XmnI	GAANNNNTTC	2 cut(s)	205, 457
XspI	CTAG	3 cut(s)	191, 434, 635
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.