Rmu_sc0004140.1_g000001

ribosomal protein L4

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004140.1
Physical Location & Seq
Reverse (-)
1084 .. 5872
4789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004140.1_g000001.1.cds

Sequence Viewer

Length: 1467 bp
atggctttgttcatttccagaagaatcgtacgttcatttggttctggtttagcatcaggccatgtttccaagggtggatcagtgtttcatgcttgtcaaatgctttcgacattagtcttgacccatgagtcgagtggaggtgcattttgctctgattcattgtccttaaagccgcccggggcttcggagtgcactacagtgacaaaatttcttgatgaaaagaaaggctccacaactttggctagtgatgtttttgatgcacctattacgatggatattgctcgtcggatatttttcttctttcgttggcttcatccagttgtgctgtggcagctagcaaaaaggcaacagccatcgaattggaaggagagtggtcgagccagccatggaacattgagtgatccccagctcagaggtcttaagccacgaagtcatactattaagaatgccgaacgtctgggattaaagattgctctgacatctcgagcggcacagggaaagcttctggtttttgaggattttgggatctacagaaataaacccaagaacattgtgaactatgtcaagcaaagacggaaaaaggagaaaaagaagaaaattctgctggtggatggtggtccaataagtgaaaagctcaagttggctactaaaaatttacattacgtgactgtgctgccttcaagtgagttggacgtcgacagcatcctttactatgacacactggtgatgtcccgtgatgctgtaaataaaattgctgagcaaattatgtatactccaatcaaccatggatccagcacgacatactggttgctagtatatgagtttttgagcaacggaagtttagcaggtttcctttttggggatctcaaacctagttggagtcaaagaagccaaatcgccttgggtgttgctagagggctcttttacttgcatgaagaatgtagcaccaggatcattcattgcgatataaagccccaaaatatactcctcgatgaaaactacaatgctcgcatttcagactttggattggcaaagctgctcctcaatcaaacccaaaccaagacaggcatcagaggaacaaaagggtatgttgcacctgattggttcaggcctgcaccagtctctgtgaaggtcgatgtgtatagtttcggtgtcttgcttctcgaaatcatttgttgcaggagaaacgtgtatatggaacttggtgttggagaaaatggtgttttgactgactgggcatacgactgctattgcgctagcagattagatgctctcattcaaaacgatatggaagccatgaatgacatgaatagagtcgagagattcgtgatggttgccatttggtgcgtccaagaagacccttctgtaagacccagtatgaagaaagttatgctgatgcttgaaggtttagttcaagtttcagttccctcatctccatgcccatttagctccatcagcaaaaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

54.64

Weight (kDa)

9.28

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 127
AatII GACGTC 1 cut(s) 696
Acc36I ACCTGC 1 cut(s) 836
AccBSI CCGCTC 1 cut(s) 488
AccI GTMKAC 2 cut(s) 696, 770
AciI CCGC 2 cut(s) 173, 488
AclWI GGATC 7 cut(s) 85, 395, 533, 783, 796, 870, 959
AcsI RAATTY 3 cut(s) 206, 597, 652
AcyI GRCGYC 1 cut(s) 693
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 859
AflII CTTAAG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 1188
AgsI TTSAA 4 cut(s) 681, 1280, 1403, 1415
AjnI CCWGG 1 cut(s) 947
AjuI GAANNNNNNNTTGG 2 cut(s) 1191, 1223
AleI CACNNNNGTG 2 cut(s) 197, 722
AluBI AGCT 6 cut(s) 334, 409, 502, 634, 1036, 1449
AluI AGCT 6 cut(s) 334, 409, 502, 634, 1036, 1449
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 1126
Alw44I GTGCAC 1 cut(s) 190
AlwI GGATC 7 cut(s) 85, 395, 533, 783, 796, 870, 959
AlwNI CAGNNNCTG 1 cut(s) 1124
Ama87I CYCGRG 2 cut(s) 176, 483
AoxI GGCC 2 cut(s) 58, 1109
ApaLI GTGCAC 1 cut(s) 190
ApeKI GCWGC 3 cut(s) 331, 673, 1036
ApoI RAATTY 3 cut(s) 206, 597, 652
AspLEI GCGC 1 cut(s) 1256
AspS9I GGNCC 1 cut(s) 617
AsuC2I CCSGG 2 cut(s) 177, 178
AsuHPI GGTGA 1 cut(s) 736
AsuNHI GCTAGC 2 cut(s) 334, 1256
AvaI CYCGRG 2 cut(s) 176, 483
AvaII GGWCC 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 194
BamHI GGATCC 1 cut(s) 788
BanII GRGCYC 1 cut(s) 921
BbsI GAAGAC 1 cut(s) 1362
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 3 cut(s) 343, 660, 1023
BccI CCATC 5 cut(s) 265, 361, 605, 1324, 1460
BciT130I CCWGG 1 cut(s) 949
BcnI CCSGG 2 cut(s) 177, 178
BcoDI GTCTC 1 cut(s) 1126
BfaI CTAG 6 cut(s) 243, 335, 812, 873, 912, 1257
BfmI CTRYAG 2 cut(s) 195, 529
BfrI CTTAAG 1 cut(s) 419
BfuAI ACCTGC 1 cut(s) 836
BisI GCNGC 5 cut(s) 173, 332, 489, 674, 1037
BlpI GCTNAGC 1 cut(s) 756
BlsI GCNGC 5 cut(s) 174, 333, 490, 675, 1038
Bme1390I CCNGG 3 cut(s) 177, 178, 949
Bme18I GGWCC 1 cut(s) 617
BmeT110I CYCGRG 2 cut(s) 176, 483
BmgT120I GGNCC 1 cut(s) 617
BmiI GGNNCC 2 cut(s) 229, 790
BmrFI CCNGG 3 cut(s) 177, 178, 949
BmrI ACTGGG 2 cut(s) 1243, 1368
BmsI GCATC 7 cut(s) 62, 247, 711, 727, 1077, 1258, 1386
BmtI GCTAGC 2 cut(s) 338, 1260
BmuI ACTGGG 2 cut(s) 1243, 1368
BoxI GACNNNNGTC 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 1362
Bpu1102I GCTNAGC 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 2 cut(s) 177, 178
BsaAI YACGTR 1 cut(s) 664
BsaHI GRCGYC 1 cut(s) 693
BsaJI CCNNGG 6 cut(s) 69, 176, 177, 385, 784, 900
Bsc4I CCNNNNNNNGG 1 cut(s) 859
Bse1I ACTGG 6 cut(s) 317, 726, 809, 1118, 1238, 1374
Bse3DI GCAATG 1 cut(s) 958
BseBI CCWGG 1 cut(s) 949
BseDI CCNNGG 6 cut(s) 69, 176, 177, 385, 784, 900
BseGI GGATG 3 cut(s) 313, 616, 702
BseLI CCNNNNNNNGG 1 cut(s) 859
BseMI GCAATG 1 cut(s) 958
BseMII CTCAG 2 cut(s) 424, 747
BseNI ACTGG 6 cut(s) 317, 726, 809, 1118, 1238, 1374
BseRI GAGGAG 2 cut(s) 977, 1031
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 3 cut(s) 343, 660, 1023
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 1098
BshFI GGCC 2 cut(s) 60, 1111
BsiHKAI GWGCWC 1 cut(s) 194
BsiHKCI CYCGRG 2 cut(s) 176, 483
BsiSI CCGG 1 cut(s) 177
BsiWI CGTACG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 1 cut(s) 859
BsmAI GTCTC 1 cut(s) 1126
BsmFI GGGAC 1 cut(s) 715
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 2 cut(s) 60, 1111
BsoBI CYCGRG 2 cut(s) 176, 483
Bsp1286I GDGCHC 2 cut(s) 194, 921
Bsp143I GATC 6 cut(s) 77, 400, 525, 788, 862, 951
Bsp1720I GCTNAGC 1 cut(s) 756
Bsp19I CCATGG 2 cut(s) 385, 784
BspACI CCGC 2 cut(s) 173, 488
BspANI GGCC 2 cut(s) 60, 1111
BspCNI CTCAG 2 cut(s) 423, 748
BspLI GGNNCC 2 cut(s) 229, 790
BspMI ACCTGC 1 cut(s) 836
BspOI GCTAGC 2 cut(s) 338, 1260
BspPI GGATC 7 cut(s) 85, 395, 533, 783, 796, 870, 959
BspTI CTTAAG 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 958
BsrI ACTGG 6 cut(s) 317, 726, 809, 1118, 1238, 1374
BssECI CCNNGG 6 cut(s) 69, 176, 177, 385, 784, 900
BssMI GATC 6 cut(s) 77, 400, 525, 788, 862, 951
BssNAI GTATAC 1 cut(s) 771
BssNI GRCGYC 1 cut(s) 693
BssT1I CCWWGG 4 cut(s) 69, 385, 784, 900
Bst1107I GTATAC 1 cut(s) 771
Bst2UI CCWGG 1 cut(s) 949
Bst4CI ACNGT 2 cut(s) 199, 670
BstACI GRCGYC 1 cut(s) 693
BstAFI CTTAAG 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 664
BstC8I GCNNGC 5 cut(s) 336, 382, 1009, 1113, 1258
BstDEI CTNAG 2 cut(s) 410, 756
BstDSI CCRYGG 2 cut(s) 385, 784
BstF5I GGATG 3 cut(s) 313, 616, 702
BstHHI GCGC 1 cut(s) 1256
BstKTI GATC 6 cut(s) 80, 403, 528, 791, 865, 954
BstMAI GTCTC 1 cut(s) 1126
BstMBI GATC 6 cut(s) 77, 400, 525, 788, 862, 951
BstMWI GCNNNNNNNGC 3 cut(s) 331, 1446, 1455
BstNI CCWGG 1 cut(s) 949
BstPAI GACNNNNGTC 1 cut(s) 113
BstSCI CCNGG 3 cut(s) 175, 176, 947
BstSFI CTRYAG 2 cut(s) 195, 529
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 343, 660, 1023
BstV2I GAAGAC 1 cut(s) 1362
BstX2I RGATCY 3 cut(s) 525, 788, 862
BstXI CCANNNNNNTGG 2 cut(s) 238, 360
BstYI RGATCY 3 cut(s) 525, 788, 862
BstZ17I GTATAC 1 cut(s) 771
BsuRI GGCC 2 cut(s) 60, 1111
BtgI CCRYGG 2 cut(s) 385, 784
BtsCI GGATG 3 cut(s) 313, 616, 702
BtsIMutI CAGTG 3 cut(s) 87, 204, 719
BveI ACCTGC 1 cut(s) 836
Cac8I GCNNGC 5 cut(s) 336, 382, 1009, 1113, 1258
CaiI CAGNNNCTG 1 cut(s) 1124
CfoI GCGC 1 cut(s) 1256
Cfr13I GGNCC 1 cut(s) 617
Cfr9I CCCGGG 1 cut(s) 176
CseI GACGC 1 cut(s) 1336
Csp6I GTAC 1 cut(s) 29
CviAII CATG 9 cut(s) 62, 89, 125, 386, 785, 932, 1297, 1306, 1437
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 410, 756
DpnI GATC 6 cut(s) 79, 402, 527, 790, 864, 953
DpnII GATC 6 cut(s) 77, 400, 525, 788, 862, 951
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
Eco130I CCWWGG 4 cut(s) 69, 385, 784, 900
Eco147I AGGCCT 1 cut(s) 1111
Eco24I GRGCYC 1 cut(s) 921
Eco47I GGWCC 1 cut(s) 617
Eco88I CYCGRG 2 cut(s) 176, 483
EcoRII CCWGG 1 cut(s) 947
EcoT14I CCWWGG 4 cut(s) 69, 385, 784, 900
EcoT38I GRGCYC 1 cut(s) 921
ErhI CCWWGG 4 cut(s) 69, 385, 784, 900
FaeI CATG 9 cut(s) 65, 92, 128, 389, 788, 935, 1300, 1309, 1440
FaqI GGGAC 1 cut(s) 715
FatI CATG 9 cut(s) 61, 88, 124, 385, 784, 931, 1296, 1305, 1436
FblI GTMKAC 2 cut(s) 696, 770
Fnu4HI GCNGC 5 cut(s) 173, 332, 489, 674, 1037
FokI GGATG 3 cut(s) 300, 623, 689
FriOI GRGCYC 1 cut(s) 921
Fsp4HI GCNGC 5 cut(s) 173, 332, 489, 674, 1037
FspBI CTAG 6 cut(s) 243, 335, 812, 873, 912, 1257
GlaI GCGC 1 cut(s) 1255
GluI GCNGC 5 cut(s) 173, 332, 489, 674, 1037
GsaI CCCAGC 1 cut(s) 409
HaeIII GGCC 2 cut(s) 60, 1111
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 1336
HhaI GCGC 1 cut(s) 1256
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 9 cut(s) 65, 92, 128, 389, 788, 935, 1300, 1309, 1440
Hin6I GCGC 1 cut(s) 1254
HinP1I GCGC 1 cut(s) 1254
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 6 cut(s) 24, 128, 155, 880, 1314, 1323
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 736
Hpy166II GTNNAC 4 cut(s) 192, 556, 697, 771
Hpy188I TCNGA 7 cut(s) 154, 187, 288, 413, 477, 1018, 1073
Hpy188III TCNNGA 7 cut(s) 18, 118, 212, 483, 1163, 1318, 1327
Hpy8I GTNNAC 4 cut(s) 192, 556, 697, 771
Hpy99I CGWCG 2 cut(s) 288, 698
HpyAV CCTTC 5 cut(s) 358, 687, 1123, 1371, 1397
HpyCH4III ACNGT 2 cut(s) 199, 670
HpyCH4IV ACGT 5 cut(s) 31, 454, 663, 693, 1188
HpyCH4V TGCA 7 cut(s) 143, 192, 260, 931, 1094, 1115, 1179
HpyF10VI GCNNNNNNNGC 3 cut(s) 331, 1446, 1455
HpyF3I CTNAG 2 cut(s) 410, 756
HpySE526I ACGT 5 cut(s) 31, 454, 663, 693, 1188
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 9 cut(s) 65, 92, 128, 389, 788, 935, 1300, 1309, 1440
HspAI GCGC 1 cut(s) 1254
Kzo9I GATC 6 cut(s) 77, 400, 525, 788, 862, 951
LmnI GCTCC 3 cut(s) 233, 1044, 1454
Lsp1109I GCAGC 3 cut(s) 343, 660, 1023
LweI GCATC 7 cut(s) 62, 247, 711, 727, 1077, 1258, 1386
MaeI CTAG 6 cut(s) 243, 335, 812, 873, 912, 1257
MaeII ACGT 5 cut(s) 31, 454, 663, 693, 1188
MaeIII GTNAC 2 cut(s) 199, 664
MalI GATC 6 cut(s) 79, 402, 527, 790, 864, 953
MbiI CCGCTC 1 cut(s) 488
MboI GATC 6 cut(s) 77, 400, 525, 788, 862, 951
MboII GAAGA 6 cut(s) 33, 289, 604, 947, 1367, 1393
MflI RGATCY 3 cut(s) 525, 788, 862
MhlI GDGCHC 2 cut(s) 194, 921
MluCI AATT 6 cut(s) 206, 358, 597, 652, 750, 762
MlyI GAGTC 3 cut(s) 137, 889, 1323
MmeI TCCRAC 4 cut(s) 266, 669, 857, 1189
MnlI CCTC 8 cut(s) 131, 407, 508, 908, 998, 1052, 1067, 1438
MseI TTAA 4 cut(s) 167, 420, 441, 464
MslI CAYNNNNRTG 3 cut(s) 197, 722, 1435
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 3 cut(s) 177, 178, 949
Mva1269I GAATGC 1 cut(s) 451
MvaI CCWGG 1 cut(s) 949
MwoI GCNNNNNNNGC 3 cut(s) 331, 1446, 1455
NciI CCSGG 2 cut(s) 177, 178
NcoI CCATGG 2 cut(s) 385, 784
NdeII GATC 6 cut(s) 77, 400, 525, 788, 862, 951
NheI GCTAGC 2 cut(s) 334, 1256
NlaIII CATG 9 cut(s) 65, 92, 128, 389, 788, 935, 1300, 1309, 1440
NlaIV GGNNCC 2 cut(s) 229, 790
NmuCI GTSAC 2 cut(s) 199, 664
OliI CACNNNNGTG 2 cut(s) 197, 722
PaeR7I CTCGAG 1 cut(s) 483
PceI AGGCCT 1 cut(s) 1111
PcsI WCGNNNNNNNCGW 1 cut(s) 1323
PctI GAATGC 1 cut(s) 451
PfeI GAWTC 3 cut(s) 24, 155, 1323
Pfl23II CGTACG 1 cut(s) 28
PkrI GCNGC 5 cut(s) 174, 333, 490, 675, 1038
PleI GAGTC 3 cut(s) 136, 888, 1322
PpsI GAGTC 3 cut(s) 136, 888, 1322
Ppu21I YACGTR 1 cut(s) 664
PshAI GACNNNNGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 947
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 1 cut(s) 947
PspLI CGTACG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 229, 790
PspPI GGNCC 1 cut(s) 617
PstNI CAGNNNCTG 1 cut(s) 1124
PsuI RGATCY 3 cut(s) 525, 788, 862
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 3 cut(s) 197, 722, 1435
SalI GTCGAC 1 cut(s) 695
SaqAI TTAA 4 cut(s) 167, 420, 441, 464
SatI GCNGC 5 cut(s) 173, 332, 489, 674, 1037
Sau3AI GATC 6 cut(s) 77, 400, 525, 788, 862, 951
Sau96I GGNCC 1 cut(s) 617
SchI GAGTC 3 cut(s) 137, 889, 1323
ScrFI CCNGG 3 cut(s) 177, 178, 949
SduI GDGCHC 2 cut(s) 194, 921
SfaNI GCATC 7 cut(s) 62, 247, 711, 727, 1077, 1258, 1386
SfcI CTRYAG 2 cut(s) 195, 529
Sfr274I CTCGAG 1 cut(s) 483
SinI GGWCC 1 cut(s) 617
SlaI CTCGAG 1 cut(s) 483
SmaI CCCGGG 1 cut(s) 178
SmiMI CAYNNNNRTG 3 cut(s) 197, 722, 1435
SmlI CTYRAG 3 cut(s) 419, 483, 635
SmoI CTYRAG 3 cut(s) 419, 483, 635
Sse9I AATT 6 cut(s) 206, 358, 597, 652, 750, 762
SseBI AGGCCT 1 cut(s) 1111
SsiI CCGC 2 cut(s) 173, 488
SspMI CTAG 6 cut(s) 243, 335, 812, 873, 912, 1257
StuI AGGCCT 1 cut(s) 1111
StyD4I CCNGG 3 cut(s) 175, 176, 947
StyI CCWWGG 4 cut(s) 69, 385, 784, 900
TaaI ACNGT 2 cut(s) 199, 670
TaiI ACGT 5 cut(s) 34, 457, 666, 696, 1191
TasI AATT 6 cut(s) 206, 358, 597, 652, 750, 762
TauI GCSGC 2 cut(s) 175, 491
TfiI GAWTC 3 cut(s) 24, 155, 1323
Tru1I TTAA 4 cut(s) 167, 420, 441, 464
Tru9I TTAA 4 cut(s) 167, 420, 441, 464
TscAI CASTG 3 cut(s) 87, 204, 726
TseFI GTSAC 2 cut(s) 199, 664
TseI GCWGC 3 cut(s) 331, 673, 1036
Tsp45I GTSAC 2 cut(s) 199, 664
TspGWI ACGGA 2 cut(s) 589, 849
TspMI CCCGGG 1 cut(s) 176
TspRI CASTG 3 cut(s) 87, 204, 726
Vha464I CTTAAG 1 cut(s) 419
VneI GTGCAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 617
XapI RAATTY 3 cut(s) 206, 597, 652
XcmI CCANNNNNNNNNTGG 2 cut(s) 131, 324
XhoI CTCGAG 1 cut(s) 483
XmaI CCCGGG 1 cut(s) 176
XmiI GTMKAC 2 cut(s) 696, 770
XspI CTAG 6 cut(s) 243, 335, 812, 873, 912, 1257
ZraI GACGTC 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.