Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001870

Physical Location & Seq

Genomic Coordinates Reverse (-)

6542392 .. 6543603

Gene Structure 1212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1077400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTACGTCACTGGAGAGTTACTTGATGATTTAACTAGCTGGGATGTTCTGCATACTGCGTTGCCGGTTGGGACTGTCAGTGGAGCACCGAAGGTGAAAGCCATGGAGCTGATCGATAAGCTGGAAGTGATTAGACGTGGTCCATATAGTGGTGGCTTTGGGGGAATTTCGTTTTCTGGCAACATGGACATCGCCCTTGCTCTGAGAACTATTGTTTTCCCAACTAGCTTTCGGTATGATACAATGTATTCATACAAGGATGCAAACAAGCGCAGAGAGTGGGTTGCTCATCTCCAAGCCGGGGCAGGAATTGTCGCTGACAGCGATCCAGCTGATGAGCAGAGGAAGTGTGAGAACAAAGCTGCTGCGCTTGCCCGCGCTATTGATCTTGCAGAGTCTTCGTTCGTTGATCCTGTTATGCCTGGATATTTTGTGTACAAATCTGGAAATTTTGGTAAATCTTGTTCACTTGTAACATTCTCTAGAATTTGTGAGTTTAATTACTGCTCGAATTGGTTCAAATGTTACTGGGAGGGGGTTAAAGGATCAAACTTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019438 GO:0019752 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

188

Amino Acids

20.61

Weight (kDa)

6.12

Isoelectric Point (pI)

24.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chorismate_bind	PF00425	4 - 121	4.6e-24	chorismate binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29690 AT2G29690
fragaria_vesca	FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350
malus_domestica	MD00G1120400.v1.1 MD03G1072500.v1.1 MD11G1077400.v1.1 MD11G1078000.v1.1 MD11G1078700.v1.1
prunus_persica	Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1
pyrus_communis	pycom03g05870 pycom11g06530 pycom11g06550 pycom11g06580
rosa_chinensis	RchiOBHm_Chr2g0157091 RchiOBHm_Chr4g0399261 RchiOBHm_Chr5g0068931
rosa_laevigata	RLG00000036024
rosa_multiflora	Rmu_sc0003000.1_g000002 Rmu_sc0006282.1_g000030 Rmu_sc0042660.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011770
rosa_rugosa	Rorug01G0059300 Rorug01G0059400 Rorug07G0214300
rosa_samantha	Rh2BG537500 Rh2DG546300 Rh5AG451600 Rh5BG470700 Rh5CG493100 Rh5DG483500 Rh7BG347700 Rh7BG347800 Rh7DG336200 Rh7DG336300
rosa_wichuraiana	Rw2G031030 Rw2G043250 Rw5G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	379
AclWI	GGATC	3 cut(s)	323, 407, 556
AcsI	RAATTY	3 cut(s)	168, 451, 489
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	152, 304
AgsI	TTSAA	1 cut(s)	523
AjiI	CACGTC	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	6 cut(s)	42, 112, 124, 231, 335, 365
AluI	AGCT	6 cut(s)	42, 112, 124, 231, 335, 365
Alw21I	GWGCWC	1 cut(s)	91
AlwI	GGATC	3 cut(s)	323, 407, 556
ApeKI	GCWGC	2 cut(s)	365, 368
ApoI	RAATTY	3 cut(s)	168, 451, 489
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	3 cut(s)	276, 373, 383
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	352, 355
BcgI	CGANNNNNNTGC	2 cut(s)	384, 418
BciT130I	CCWGG	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	304
BfaI	CTAG	3 cut(s)	39, 228, 486
BisI	GCNGC	2 cut(s)	366, 369
BlsI	GCNGC	2 cut(s)	367, 370
Bme1390I	CCNGG	2 cut(s)	304, 426
Bme18I	GGWCC	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	143
BmrFI	CCNGG	2 cut(s)	304, 426
BmrI	ACTGGG	1 cut(s)	541
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	304
Bsa29I	ATCGAT	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	105, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 304
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	19, 536
BseBI	CCWGG	1 cut(s)	426
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	105, 303
BseGI	GGATG	2 cut(s)	52, 268
BseLI	CCNNNNNNNGG	2 cut(s)	152, 304
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	19, 536
BseXI	GCAGC	2 cut(s)	352, 355
BseYI	CCCAGC	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	68, 303
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	2 cut(s)	152, 304
BsmFI	GGGAC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	114, 328, 388, 412, 548
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	198
BspDI	ATCGAT	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	381
BspPI	GGATC	3 cut(s)	323, 407, 556
BsrFI	RCCGGY	1 cut(s)	67
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	19, 536
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	105, 303
BssMI	GATC	5 cut(s)	114, 328, 388, 412, 548
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	79
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	375, 379
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	52, 268
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	3 cut(s)	276, 373, 383
BstKTI	GATC	5 cut(s)	117, 331, 391, 415, 551
BstMBI	GATC	5 cut(s)	114, 328, 388, 412, 548
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	2 cut(s)	302, 424
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	352, 355
BstV2I	GAAGAC	1 cut(s)	393
Bsu15I	ATCGAT	1 cut(s)	117
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	52, 268
BtsIMutI	CAGTG	2 cut(s)	12, 88
Cac8I	GCNNGC	2 cut(s)	375, 379
CfoI	GCGC	3 cut(s)	276, 373, 383
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	2 cut(s)	106, 187
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	5 cut(s)	116, 330, 390, 414, 550
DpnII	GATC	5 cut(s)	114, 328, 388, 412, 548
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	109, 190
FaiI	YATR	8 cut(s)	57, 107, 148, 150, 188, 240, 256, 422
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	105, 186
FauI	CCCGC	1 cut(s)	386
Fnu4HI	GCNGC	2 cut(s)	366, 369
FokI	GGATG	2 cut(s)	59, 275
Fsp4HI	GCNGC	2 cut(s)	366, 369
FspBI	CTAG	3 cut(s)	39, 228, 486
GlaI	GCGC	3 cut(s)	275, 372, 382
GluI	GCNGC	2 cut(s)	366, 369
GsaI	CCCAGC	1 cut(s)	46
GsuI	CTGGAG	1 cut(s)	36
HapII	CCGG	2 cut(s)	68, 303
HhaI	GCGC	3 cut(s)	276, 373, 383
Hin1II	CATG	2 cut(s)	109, 190
Hin6I	GCGC	3 cut(s)	274, 371, 381
HinP1I	GCGC	3 cut(s)	274, 371, 381
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	2 cut(s)	68, 303
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	439, 470
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	447, 486
Hpy8I	GTNNAC	2 cut(s)	439, 470
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	2 cut(s)	9, 139
HpyCH4V	TGCA	3 cut(s)	55, 266, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	2 cut(s)	9, 139
Hsp92II	CATG	2 cut(s)	109, 190
HspAI	GCGC	3 cut(s)	274, 371, 381
Kzo9I	GATC	5 cut(s)	114, 328, 388, 412, 548
LmnI	GCTCC	2 cut(s)	86, 109
Lsp1109I	GCAGC	2 cut(s)	352, 355
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	3 cut(s)	39, 228, 486
MaeII	ACGT	2 cut(s)	9, 139
MaeIII	GTNAC	4 cut(s)	10, 21, 475, 527
MalI	GATC	5 cut(s)	116, 330, 390, 414, 550
MboI	GATC	5 cut(s)	114, 328, 388, 412, 548
MboII	GAAGA	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	6 cut(s)	168, 312, 451, 489, 502, 514
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	2 cut(s)	339, 529
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	3 cut(s)	35, 501, 543
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	2 cut(s)	68, 303
MspR9I	CCNGG	2 cut(s)	304, 426
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	304
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	5 cut(s)	114, 328, 388, 412, 548
NlaIII	CATG	2 cut(s)	109, 190
NmuCI	GTSAC	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	518
PflFI	GACNNNGTC	1 cut(s)	141
PflMI	CCANNNNNTGG	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	367, 370
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	143
PsrI	GAACNNNNNNTAC	2 cut(s)	451, 483
PsyI	GACNNNGTC	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SaqAI	TTAA	3 cut(s)	35, 501, 543
SatI	GCNGC	2 cut(s)	366, 369
Sau3AI	GATC	5 cut(s)	114, 328, 388, 412, 548
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	2 cut(s)	304, 426
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	9 cut(s)	12, 44, 99, 114, 126, 142, 233, 337, 367
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	143
Sse9I	AATT	6 cut(s)	168, 312, 451, 489, 502, 514
SsiI	CCGC	1 cut(s)	379
SspMI	CTAG	3 cut(s)	39, 228, 486
StyD4I	CCNGG	2 cut(s)	302, 424
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	2 cut(s)	12, 142
TaqI	TCGA	2 cut(s)	117, 512
TasI	AATT	6 cut(s)	168, 312, 451, 489, 502, 514
TatI	WGTACW	1 cut(s)	438
Tru1I	TTAA	3 cut(s)	35, 501, 543
Tru9I	TTAA	3 cut(s)	35, 501, 543
TscAI	CASTG	2 cut(s)	19, 88
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	365, 368
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	19, 88
Tth111I	GACNNNGTC	1 cut(s)	141
Van91I	CCANNNNNTGG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	3 cut(s)	168, 451, 489
XbaI	TCTAGA	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	3 cut(s)	39, 228, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.