Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001870

Physical Location & Seq

Genomic Coordinates Forward (+)

43822724 .. 43823431

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG336200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAAACCCTAGCCGCCGTCAGCTCCCGTCAGCTGACGTCAACTCTCGCATTGCCGTCCACCGTCACCGTCAATTTCAACGGCCGAGTCTGCAGCTCTCTACCTCTGCTTCGCTCCACCGCGCGTGTCCGTTCACTCAGATGCTCCGCTATTTCGTCTCTTTCAGTAGCTGAGCAGTCAGAGAGGTTTTTCGAGGCTTCGAAAAATGGGAATTTAATTCCTTTATACCGAAGTATATTTTCGGATCACTTAACTCCTGTGCTTGCTTACCGGTGTCTGGTTAAGGAGGATGATAGAGACGCTCCGAGTTTTCTTTTTGAGGCAGTTGATCCGGGTTTCAAGGACACCAATGTTGAGCGCAACCAACTATTGAGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019438 GO:0019752 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

126

Amino Acids

13.97

Weight (kDa)

8.59

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29690 AT2G29690
fragaria_vesca	FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350
malus_domestica	MD00G1120400.v1.1 MD03G1072500.v1.1 MD11G1077400.v1.1 MD11G1078000.v1.1 MD11G1078700.v1.1
prunus_persica	Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1
pyrus_communis	pycom03g05870 pycom11g06530 pycom11g06550 pycom11g06580
rosa_chinensis	RchiOBHm_Chr2g0157091 RchiOBHm_Chr4g0399261 RchiOBHm_Chr5g0068931
rosa_laevigata	RLG00000036024
rosa_multiflora	Rmu_sc0003000.1_g000002 Rmu_sc0006282.1_g000030 Rmu_sc0042660.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011770
rosa_rugosa	Rorug01G0059300 Rorug01G0059400 Rorug07G0214300
rosa_samantha	Rh2BG537500 Rh2DG546300 Rh5AG451600 Rh5BG470700 Rh5CG493100 Rh5DG483500 Rh7BG347700 Rh7BG347800 Rh7DG336200 Rh7DG336300
rosa_wichuraiana	Rw2G031030 Rw2G043250 Rw5G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccII	CGCG	2 cut(s)	122, 124
AciI	CCGC	3 cut(s)	15, 120, 147
AclWI	GGATC	2 cut(s)	252, 323
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgeI	ACCGGT	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	79, 340
AluBI	AGCT	4 cut(s)	24, 34, 96, 170
AluI	AGCT	4 cut(s)	24, 34, 96, 170
Alw26I	GTCTC	2 cut(s)	162, 291
AlwI	GGATC	2 cut(s)	252, 323
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	211
AsiGI	ACCGGT	1 cut(s)	270
AspLEI	GCGC	2 cut(s)	124, 360
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	1 cut(s)	58
AsuII	TTCGAA	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	105
BceAI	ACGGC	3 cut(s)	2, 40, 97
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	2 cut(s)	162, 291
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	2 cut(s)	15, 94
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	2 cut(s)	16, 95
Bme1390I	CCNGG	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	2 cut(s)	151, 162
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	105
Bsh1236I	CGCG	2 cut(s)	122, 124
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	84
BshTI	ACCGGT	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	271, 332
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	162, 291
BsmBI	CGTCTC	2 cut(s)	162, 291
BsnI	GGCC	1 cut(s)	84
Bsp119I	TTCGAA	1 cut(s)	200
Bsp143I	GATC	3 cut(s)	244, 328, 374
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	3 cut(s)	15, 120, 147
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	2 cut(s)	150, 163
BspFNI	CGCG	2 cut(s)	122, 124
BspMAI	CTGCAG	1 cut(s)	95
BspPI	GGATC	2 cut(s)	252, 323
BspT104I	TTCGAA	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	270
BssMI	GATC	3 cut(s)	244, 328, 374
BssNI	GRCGYC	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	64, 70
BstACI	GRCGYC	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	137, 171
BstF5I	GGATG	1 cut(s)	295
BstFNI	CGCG	2 cut(s)	122, 124
BstHHI	GCGC	2 cut(s)	124, 360
BstKTI	GATC	3 cut(s)	247, 331, 377
BstMAI	GTCTC	2 cut(s)	162, 291
BstMBI	GATC	3 cut(s)	244, 328, 374
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	2 cut(s)	122, 124
BstV1I	GCAGC	1 cut(s)	105
BstZI	CGGCCG	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	264
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	2 cut(s)	124, 360
Cfr10I	RCCGGY	1 cut(s)	270
CseI	GACGC	1 cut(s)	308
CspAI	ACCGGT	1 cut(s)	270
CviJI	RGCY	7 cut(s)	14, 24, 34, 84, 96, 170, 197
CviKI_1	RGCY	7 cut(s)	14, 24, 34, 84, 96, 170, 197
DdeI	CTNAG	2 cut(s)	137, 171
DpnI	GATC	3 cut(s)	246, 330, 376
DpnII	GATC	3 cut(s)	244, 328, 374
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	82
Esp3I	CGTCTC	2 cut(s)	162, 291
FaiI	YATR	2 cut(s)	226, 236
Fnu4HI	GCNGC	2 cut(s)	15, 94
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	15, 94
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	2 cut(s)	123, 359
GluI	GCNGC	2 cut(s)	15, 94
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	2 cut(s)	271, 332
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	2 cut(s)	124, 360
Hin1I	GRCGYC	1 cut(s)	38
Hin6I	GCGC	2 cut(s)	122, 358
HinP1I	GCGC	2 cut(s)	122, 358
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	2 cut(s)	271, 332
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	42, 60, 134
Hpy188I	TCNGA	4 cut(s)	140, 181, 244, 306
Hpy8I	GTNNAC	3 cut(s)	42, 60, 134
HpyCH4III	ACNGT	2 cut(s)	64, 70
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	2 cut(s)	137, 171
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	38
HspAI	GCGC	2 cut(s)	122, 358
Kzo9I	GATC	3 cut(s)	244, 328, 374
LmnI	GCTCC	4 cut(s)	29, 119, 149, 307
LpnPI	CCDG	4 cut(s)	263, 270, 284, 345
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	3 cut(s)	246, 330, 376
MboI	GATC	3 cut(s)	244, 328, 374
MluCI	AATT	3 cut(s)	73, 211, 216
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	114, 177, 187, 280, 313
MseI	TTAA	3 cut(s)	215, 251, 282
MslI	CAYNNNNRTG	1 cut(s)	139
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	2 cut(s)	271, 332
MspR9I	CCNGG	1 cut(s)	333
MvnI	CGCG	2 cut(s)	122, 124
MwoI	GCNNNNNNNGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	244, 328, 374
NmeAIII	GCCGAG	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	200
PinAI	ACCGGT	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	16, 95
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	215, 251, 282
SatI	GCNGC	2 cut(s)	15, 94
Sau3AI	GATC	3 cut(s)	244, 328, 374
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	7 cut(s)	26, 36, 41, 98, 106, 172, 188
SfaNI	GCATC	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	91
SfuI	TTCGAA	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	139
Sse9I	AATT	3 cut(s)	73, 211, 216
SsiI	CCGC	3 cut(s)	15, 120, 147
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	64, 70
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	192, 200
TasI	AATT	3 cut(s)	73, 211, 216
TauI	GCSGC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	215, 251, 282
Tru9I	TTAA	3 cut(s)	215, 251, 282
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	64
TspGWI	ACGGA	1 cut(s)	119
XapI	RAATTY	1 cut(s)	211
XspI	CTAG	1 cut(s)	11
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.