Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001870

Physical Location & Seq

Genomic Coordinates Reverse (-)

5071435 .. 5072773

Gene Structure 1339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTGGAAAAGCAGCTTTTGAATGATGAAAAGCAATGTGCAGAGCATATTATGCTTGTAGACTTGGGAAGGAATGATGTTGGGAAGGTCTCAAAACCTGGTTCTGTCAAGGTTGAGGAGCTCATGAACATTGAGCGTTATTCCCATGTCATGCACATAAGTTCAACAGTTACTGGAGAGTTACTTGATGATTTAACTAGCTGGGATGTTCTGCGTACTGCGTTGCCGGTTGGGACAGTCAGTGGAGCACCGAAGGTGAAAGCCATGGAGCTGATCGATAAGCTAGAAGTGACTAGACGTGGTCCATACAGTGGTGGCTTTGGGGGAATTTCGTTTTCTGGCAACATGGACATTGCCCTTGCTTTGAGAACTATTGTTTTCCCAACTAGCTTTCGGTATGATACAATGTATTCATACAAGGACGCAAACAAGCGCAGAGAGTGGGTCGCTCATCTCCAAGCCGGGGCAGGAATTGTCGCTGACAGTGATCCAGCCGATGAGCAGAGGGAGTGCGAGAACAAAGCTGCTGCTCTTGCGCGCGCTATTGATCTGGCGGAGTCCTCGTTCGTTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019438 GO:0019752 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

193

Amino Acids

21.11

Weight (kDa)

5.14

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chorismate_bind	PF00425	2 - 174	8.2e-50	chorismate binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29690 AT2G29690
fragaria_vesca	FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350
malus_domestica	MD00G1120400.v1.1 MD03G1072500.v1.1 MD11G1077400.v1.1 MD11G1078000.v1.1 MD11G1078700.v1.1
prunus_persica	Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1
pyrus_communis	pycom03g05870 pycom11g06530 pycom11g06550 pycom11g06580
rosa_chinensis	RchiOBHm_Chr2g0157091 RchiOBHm_Chr4g0399261 RchiOBHm_Chr5g0068931
rosa_laevigata	RLG00000036024
rosa_multiflora	Rmu_sc0003000.1_g000002 Rmu_sc0006282.1_g000030 Rmu_sc0042660.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011770
rosa_rugosa	Rorug01G0059300 Rorug01G0059400 Rorug07G0214300
rosa_samantha	Rh2BG537500 Rh2DG546300 Rh5AG451600 Rh5BG470700 Rh5CG493100 Rh5DG483500 Rh7BG347700 Rh7BG347800 Rh7DG336200 Rh7DG336300
rosa_wichuraiana	Rw2G031030 Rw2G043250 Rw5G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	2 cut(s)	538, 540
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	1 cut(s)	327
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	2 cut(s)	311, 463
AgsI	TTSAA	2 cut(s)	22, 165
AjiI	CACGTC	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	97
AloI	GAACNNNNNNTCC	1 cut(s)	548
AluBI	AGCT	7 cut(s)	16, 121, 201, 271, 283, 390, 524
AluI	AGCT	7 cut(s)	16, 121, 201, 271, 283, 390, 524
Alw21I	GWGCWC	2 cut(s)	123, 250
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	13, 524, 527
ApoI	RAATTY	1 cut(s)	327
AspLEI	GCGC	4 cut(s)	435, 538, 540, 542
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	2 cut(s)	123, 250
BbvI	GCAGC	3 cut(s)	25, 511, 514
BciT130I	CCWGG	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	4 cut(s)	198, 284, 294, 387
BisI	GCNGC	3 cut(s)	14, 525, 528
BlsI	GCNGC	3 cut(s)	15, 526, 529
Bme1390I	CCNGG	2 cut(s)	99, 463
Bme18I	GGWCC	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	302
BmrFI	CCNGG	2 cut(s)	99, 463
BpmI	CTGGAG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	463
Bsa29I	ATCGAT	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	264, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 463
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	2 cut(s)	41, 351
BseBI	CCWGG	1 cut(s)	99
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	264, 462
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	311, 463
BseMI	GCAATG	2 cut(s)	41, 351
BseNI	ACTGG	1 cut(s)	178
BsePI	GCGCGC	2 cut(s)	536, 538
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	3 cut(s)	25, 511, 514
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	60
Bsh1236I	CGCG	2 cut(s)	538, 540
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	123, 250
BsiSI	CCGG	2 cut(s)	227, 462
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	311, 463
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	247
Bso31I	GGTCTC	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	123, 250
Bsp143I	GATC	3 cut(s)	273, 487, 547
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	1 cut(s)	554
BspDI	ATCGAT	1 cut(s)	276
BspFNI	CGCG	2 cut(s)	538, 540
BspHI	TCATGA	1 cut(s)	123
BspPI	GGATC	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	94
BsrDI	GCAATG	2 cut(s)	41, 351
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	264, 462
BssHII	GCGCGC	2 cut(s)	536, 538
BssMI	GATC	3 cut(s)	273, 487, 547
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	4 cut(s)	169, 238, 311, 485
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	538, 540
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	2 cut(s)	538, 540
BstHHI	GCGC	4 cut(s)	435, 538, 540, 542
BstKTI	GATC	3 cut(s)	276, 490, 550
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	3 cut(s)	273, 487, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 52, 533
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	2 cut(s)	97, 461
BstUI	CGCG	2 cut(s)	538, 540
BstV1I	GCAGC	3 cut(s)	25, 511, 514
Bsu15I	ATCGAT	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	264
BtrI	CACGTC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	3 cut(s)	247, 316, 490
Cac8I	GCNNGC	2 cut(s)	538, 540
CaiI	CAGNNNCTG	1 cut(s)	173
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	4 cut(s)	435, 538, 540, 542
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	302
ClaI	ATCGAT	1 cut(s)	276
CseI	GACGC	1 cut(s)	431
CsiI	ACCWGGT	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	5 cut(s)	124, 146, 151, 265, 346
CviQI	GTAC	1 cut(s)	216
DpnI	GATC	3 cut(s)	275, 489, 549
DpnII	GATC	3 cut(s)	273, 487, 547
EciI	GGCGGA	1 cut(s)	569
Ecl136II	GAGCTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	5 cut(s)	127, 149, 154, 268, 349
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	5 cut(s)	123, 145, 150, 264, 345
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	14, 525, 528
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	3 cut(s)	14, 525, 528
FspBI	CTAG	4 cut(s)	198, 284, 294, 387
GlaI	GCGC	4 cut(s)	434, 537, 539, 541
GluI	GCNGC	3 cut(s)	14, 525, 528
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	195
HapII	CCGG	2 cut(s)	227, 462
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	4 cut(s)	435, 538, 540, 542
Hin1II	CATG	5 cut(s)	127, 149, 154, 268, 349
Hin6I	GCGC	4 cut(s)	433, 536, 538, 540
HinP1I	GCGC	4 cut(s)	433, 536, 538, 540
HinfI	GANTC	1 cut(s)	557
HpaII	CCGG	2 cut(s)	227, 462
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	63, 79, 247
HpyCH4III	ACNGT	4 cut(s)	169, 238, 311, 485
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	41, 154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 52, 533
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	5 cut(s)	127, 149, 154, 268, 349
HspAI	GCGC	4 cut(s)	433, 536, 538, 540
Kzo9I	GATC	3 cut(s)	273, 487, 547
LmnI	GCTCC	3 cut(s)	118, 245, 268
Lsp1109I	GCAGC	3 cut(s)	25, 511, 514
MabI	ACCWGGT	1 cut(s)	97
MaeI	CTAG	4 cut(s)	198, 284, 294, 387
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	3 cut(s)	169, 180, 289
MalI	GATC	3 cut(s)	275, 489, 549
MboI	GATC	3 cut(s)	273, 487, 547
MhlI	GDGCHC	2 cut(s)	123, 250
MluCI	AATT	3 cut(s)	327, 471, 574
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	3 cut(s)	109, 498, 571
MseI	TTAA	1 cut(s)	194
MspI	CCGG	2 cut(s)	227, 462
MspR9I	CCNGG	2 cut(s)	99, 463
MvaI	CCWGG	1 cut(s)	99
MvnI	CGCG	2 cut(s)	538, 540
MwoI	GCNNNNNNNGC	3 cut(s)	10, 52, 533
NciI	CCSGG	1 cut(s)	463
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	273, 487, 547
NlaIII	CATG	5 cut(s)	127, 149, 154, 268, 349
NmuCI	GTSAC	1 cut(s)	289
PagI	TCATGA	1 cut(s)	123
PauI	GCGCGC	2 cut(s)	536, 538
PflFI	GACNNNGTC	1 cut(s)	300
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	3 cut(s)	15, 526, 529
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	300
PteI	GCGCGC	2 cut(s)	536, 538
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	3 cut(s)	14, 525, 528
Sau3AI	GATC	3 cut(s)	273, 487, 547
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	99, 463
SduI	GDGCHC	2 cut(s)	123, 250
SexAI	ACCWGGT	1 cut(s)	97
SinI	GGWCC	1 cut(s)	302
Sse9I	AATT	3 cut(s)	327, 471, 574
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	4 cut(s)	198, 284, 294, 387
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	97, 461
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	4 cut(s)	169, 238, 311, 485
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	327, 471, 574
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	3 cut(s)	247, 316, 490
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	3 cut(s)	13, 524, 527
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	42, 140, 402
TspRI	CASTG	3 cut(s)	247, 316, 490
Tth111I	GACNNNGTC	1 cut(s)	300
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	4 cut(s)	198, 284, 294, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.