Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001870

Physical Location & Seq

Genomic Coordinates Forward (+)

36305376 .. 36307983

Gene Structure 2608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG347700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAAACCCTAGCCGCCGTCAGCTCCCGTCAGCTGACGTCAACTCTCGCATTGCCGTCCACCGTCACCGTCAATTTCAACGGCCGAGTCTGCAGCTCTCTACCCCTGCTTCGCTCCACCGCGCGTGTCCGTTCACTCAGATGCTCCGCTATTTCGTCTCTTTCAGTAGCTGAGCAGTCAGAGAGGTTTTTCGAGGCTTCGAAAAATGGGAATTTAATTCCTTTATACCGAAGTATATTTTCGGATCACTTAACTCCTGTGCTTGCTTACCGGTGTCTGGTTAAGGAGGATGATAGAGACGCTCCGAGTTTTCTTTTTGAGGCAGTTGATCCGGGTTTCAAGGACTCCAATGTTGGGCGGTACAGTATTATTGGAGCGCAACCAACTATTGAGATCGTAGCAAAAGAGAACATGGTTACAGTTATGGACCATAGAGAAGGGCGTAGGACAGAGGAGATTGTGGAGGATCCAATGACTGTTCCTCAGAGAATCACGGAGGGATGGATACCGCAACGTCTTGATGAGATGCCAGAAGCATTTTGTGGTGGATGGGTTGGTTACTTCTCTTATGATACAGTGCGTTATGTGGAGAAGAAAAAGCTGCCATTCAGTGGTGCACCACCAGATGACAGAAATCTTCCTGATCTTCATCTTGGCCTGTATGATAGTGTGATAGTGTTTGATCATGTGGAGAAGAAAGCACATGTAATTCACTGGGTGCAATTAGATCGGTATTCTTCAGTTGAGGAGGCCTTCAATGATGGGATGAATAGATTGGAAACACTGGTATCTAGAGTGCATGACATTATCACCCCGAGGCTGCCTGCAGGTTCAATAAAGTTACACACATCTATTTGGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019438 GO:0019752 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

287

Amino Acids

32.36

Weight (kDa)

5.79

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anth_synt_I_N	PF04715	82 - 235	1.2e-28	Anthranilate synthase component I, N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29690 AT2G29690
fragaria_vesca	FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350
malus_domestica	MD00G1120400.v1.1 MD03G1072500.v1.1 MD11G1077400.v1.1 MD11G1078000.v1.1 MD11G1078700.v1.1
prunus_persica	Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1
pyrus_communis	pycom03g05870 pycom11g06530 pycom11g06550 pycom11g06580
rosa_chinensis	RchiOBHm_Chr2g0157091 RchiOBHm_Chr4g0399261 RchiOBHm_Chr5g0068931
rosa_laevigata	RLG00000036024
rosa_multiflora	Rmu_sc0003000.1_g000002 Rmu_sc0006282.1_g000030 Rmu_sc0042660.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011770
rosa_rugosa	Rorug01G0059300 Rorug01G0059400 Rorug07G0214300
rosa_samantha	Rh2BG537500 Rh2DG546300 Rh5AG451600 Rh5BG470700 Rh5CG493100 Rh5DG483500 Rh7BG347700 Rh7BG347800 Rh7DG336200 Rh7DG336300
rosa_wichuraiana	Rw2G031030 Rw2G043250 Rw5G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	818
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccII	CGCG	2 cut(s)	122, 124
AciI	CCGC	5 cut(s)	15, 120, 147, 358, 509
AclWI	GGATC	4 cut(s)	252, 323, 461, 474
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	723
AcyI	GRCGYC	1 cut(s)	38
AdeI	CACNNNGTG	1 cut(s)	718
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	277, 354, 611
AflIII	ACRYGT	1 cut(s)	703
AgeI	ACCGGT	1 cut(s)	270
AgsI	TTSAA	4 cut(s)	79, 340, 757, 834
AluBI	AGCT	5 cut(s)	24, 34, 96, 170, 601
AluI	AGCT	5 cut(s)	24, 34, 96, 170, 601
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	2 cut(s)	162, 291
Alw44I	GTGCAC	1 cut(s)	615
AlwI	GGATC	4 cut(s)	252, 323, 461, 474
AlwNI	CAGNNNCTG	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	814
AoxI	GGCC	3 cut(s)	82, 655, 750
ApaLI	GTGCAC	1 cut(s)	615
ApeKI	GCWGC	3 cut(s)	93, 601, 820
ApoI	RAATTY	1 cut(s)	211
AsiGI	ACCGGT	1 cut(s)	270
AspLEI	GCGC	2 cut(s)	124, 379
AspS9I	GGNCC	1 cut(s)	427
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	58, 802
AsuII	TTCGAA	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	814
AvaII	GGWCC	1 cut(s)	427
BaeGI	GKGCMC	1 cut(s)	619
BaeI	ACNNNNGTAYC	2 cut(s)	771, 804
BamHI	GGATCC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	3 cut(s)	105, 588, 807
BccI	CCATC	3 cut(s)	495, 543, 755
BceAI	ACGGC	3 cut(s)	2, 40, 97
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciVI	GTATCC	1 cut(s)	498
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	2 cut(s)	162, 291
BfaI	CTAG	2 cut(s)	11, 792
BfmI	CTRYAG	2 cut(s)	91, 825
BfuAI	ACCTGC	1 cut(s)	818
BfuI	GTATCC	1 cut(s)	498
BisI	GCNGC	4 cut(s)	15, 94, 602, 821
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	4 cut(s)	16, 95, 603, 822
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	427
BmeT110I	CYCGRG	1 cut(s)	814
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	333
BmrI	ACTGGG	1 cut(s)	724
BmsI	GCATC	2 cut(s)	131, 516
BmuI	ACTGGG	1 cut(s)	724
Bpu1102I	GCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	648
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	815
BsaWI	WCCGGW	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 354, 611
Bse118I	RCCGGY	1 cut(s)	270
Bse1I	ACTGG	2 cut(s)	719, 789
Bse3DI	GCAATG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	648
BseDI	CCNNGG	1 cut(s)	815
BseGI	GGATG	4 cut(s)	295, 506, 554, 771
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	3 cut(s)	277, 354, 611
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	151, 162, 497
BseNI	ACTGG	2 cut(s)	719, 789
BseRI	GAGGAG	2 cut(s)	467, 761
BseSI	GKGCMC	1 cut(s)	619
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	3 cut(s)	105, 588, 807
Bsh1236I	CGCG	2 cut(s)	122, 124
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	84, 657, 752
BshTI	ACCGGT	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	619
BsiHKCI	CYCGRG	1 cut(s)	814
BsiSI	CCGG	2 cut(s)	271, 332
BslI	CCNNNNNNNGG	3 cut(s)	277, 354, 611
BsmAI	GTCTC	2 cut(s)	162, 291
BsmBI	CGTCTC	2 cut(s)	162, 291
BsnI	GGCC	3 cut(s)	84, 657, 752
BsoBI	CYCGRG	1 cut(s)	814
Bsp119I	TTCGAA	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	7 cut(s)	244, 328, 393, 466, 643, 682, 727
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	5 cut(s)	15, 120, 147, 358, 509
BspANI	GGCC	3 cut(s)	84, 657, 752
BspCNI	CTCAG	3 cut(s)	150, 163, 496
BspFNI	CGCG	2 cut(s)	122, 124
BspLI	GGNNCC	1 cut(s)	468
BspMAI	CTGCAG	2 cut(s)	95, 829
BspMI	ACCTGC	1 cut(s)	818
BspPI	GGATC	4 cut(s)	252, 323, 461, 474
BspT104I	TTCGAA	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	719, 789
BssAI	RCCGGY	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	815
BssMI	GATC	7 cut(s)	244, 328, 393, 466, 643, 682, 727
BssNI	GRCGYC	1 cut(s)	38
Bst4CI	ACNGT	6 cut(s)	64, 70, 365, 421, 478, 577
BstACI	GRCGYC	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	264, 825
BstDEI	CTNAG	3 cut(s)	137, 171, 483
BstF5I	GGATG	4 cut(s)	295, 506, 554, 771
BstFNI	CGCG	2 cut(s)	122, 124
BstHHI	GCGC	2 cut(s)	124, 379
BstKTI	GATC	7 cut(s)	247, 331, 396, 469, 646, 685, 730
BstMAI	GTCTC	2 cut(s)	162, 291
BstMBI	GATC	7 cut(s)	244, 328, 393, 466, 643, 682, 727
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	707
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	2 cut(s)	91, 825
BstSLI	GKGCMC	1 cut(s)	619
BstUI	CGCG	2 cut(s)	122, 124
BstV1I	GCAGC	3 cut(s)	105, 588, 807
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BstZI	CGGCCG	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	84, 657, 752
BtsCI	GGATG	4 cut(s)	295, 506, 554, 771
BtsIMutI	CAGTG	4 cut(s)	582, 616, 712, 782
BveI	ACCTGC	1 cut(s)	818
Cac8I	GCNNGC	2 cut(s)	264, 825
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	2 cut(s)	124, 379
Cfr10I	RCCGGY	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	361
CspAI	ACCGGT	1 cut(s)	270
CviAII	CATG	4 cut(s)	412, 686, 704, 800
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	137, 171, 483
DpnI	GATC	7 cut(s)	246, 330, 395, 468, 645, 684, 729
DpnII	GATC	7 cut(s)	244, 328, 393, 466, 643, 682, 727
DraIII	CACNNNGTG	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	752
Eco47I	GGWCC	1 cut(s)	427
Eco52I	CGGCCG	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	723
Eco88I	CYCGRG	1 cut(s)	814
Esp3I	CGTCTC	2 cut(s)	162, 291
FaeI	CATG	4 cut(s)	415, 689, 707, 803
FatI	CATG	4 cut(s)	411, 685, 703, 799
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	4 cut(s)	15, 94, 602, 821
FokI	GGATG	4 cut(s)	302, 513, 561, 778
Fsp4HI	GCNGC	4 cut(s)	15, 94, 602, 821
FspBI	CTAG	2 cut(s)	11, 792
GlaI	GCGC	2 cut(s)	123, 378
GluI	GCNGC	4 cut(s)	15, 94, 602, 821
HaeIII	GGCC	3 cut(s)	84, 657, 752
HapII	CCGG	2 cut(s)	271, 332
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	2 cut(s)	124, 379
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	4 cut(s)	415, 689, 707, 803
Hin6I	GCGC	2 cut(s)	122, 377
HinP1I	GCGC	2 cut(s)	122, 377
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	3 cut(s)	87, 344, 489
HpaII	CCGG	2 cut(s)	271, 332
HphI	GGTGA	2 cut(s)	58, 802
Hpy166II	GTNNAC	4 cut(s)	42, 60, 134, 617
Hpy188I	TCNGA	5 cut(s)	140, 181, 244, 306, 486
Hpy188III	TCNNGA	3 cut(s)	518, 641, 792
Hpy8I	GTNNAC	4 cut(s)	42, 60, 134, 617
HpyAV	CCTTC	2 cut(s)	431, 763
HpyCH4III	ACNGT	6 cut(s)	64, 70, 365, 421, 478, 577
HpyCH4IV	ACGT	2 cut(s)	38, 514
HpyCH4V	TGCA	5 cut(s)	93, 617, 721, 799, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	3 cut(s)	137, 171, 483
HpySE526I	ACGT	2 cut(s)	38, 514
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	4 cut(s)	415, 689, 707, 803
HspAI	GCGC	2 cut(s)	122, 377
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	7 cut(s)	244, 328, 393, 466, 643, 682, 727
LmnI	GCTCC	5 cut(s)	29, 119, 149, 307, 374
Lsp1109I	GCAGC	3 cut(s)	105, 588, 807
LweI	GCATC	2 cut(s)	131, 516
MaeI	CTAG	2 cut(s)	11, 792
MaeII	ACGT	2 cut(s)	38, 514
MaeIII	GTNAC	4 cut(s)	64, 415, 557, 840
MalI	GATC	7 cut(s)	246, 330, 395, 468, 645, 684, 729
MboI	GATC	7 cut(s)	244, 328, 393, 466, 643, 682, 727
MboII	GAAGA	5 cut(s)	604, 629, 638, 706, 729
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	5 cut(s)	73, 211, 216, 708, 722
MlyI	GAGTC	2 cut(s)	96, 338
MseI	TTAA	3 cut(s)	215, 251, 282
MslI	CAYNNNNRTG	1 cut(s)	139
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	2 cut(s)	271, 332
MspR9I	CCNGG	1 cut(s)	333
MvnI	CGCG	2 cut(s)	122, 124
MwoI	GCNNNNNNNGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	7 cut(s)	244, 328, 393, 466, 643, 682, 727
NlaIII	CATG	4 cut(s)	415, 689, 707, 803
NlaIV	GGNNCC	1 cut(s)	468
NmeAIII	GCCGAG	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	707
NspV	TTCGAA	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	752
PciI	ACATGT	1 cut(s)	703
PfeI	GAWTC	1 cut(s)	489
PflMI	CCANNNNNTGG	1 cut(s)	611
PinAI	ACCGGT	1 cut(s)	270
PkrI	GCNGC	4 cut(s)	16, 95, 603, 822
PleI	GAGTC	2 cut(s)	95, 338
PpsI	GAGTC	2 cut(s)	95, 338
PscI	ACATGT	1 cut(s)	703
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	427
PstI	CTGCAG	2 cut(s)	95, 829
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	215, 251, 282
SatI	GCNGC	4 cut(s)	15, 94, 602, 821
Sau3AI	GATC	7 cut(s)	244, 328, 393, 466, 643, 682, 727
Sau96I	GGNCC	1 cut(s)	427
SbfI	CCTGCAGG	1 cut(s)	829
SchI	GAGTC	2 cut(s)	96, 338
ScrFI	CCNGG	1 cut(s)	333
SdaI	CCTGCAGG	1 cut(s)	829
SduI	GDGCHC	1 cut(s)	619
SetI	ASST	9 cut(s)	26, 36, 41, 98, 172, 188, 517, 603, 832
SfaNI	GCATC	2 cut(s)	131, 516
SfcI	CTRYAG	2 cut(s)	91, 825
SfuI	TTCGAA	1 cut(s)	200
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	139
Sse8387I	CCTGCAGG	1 cut(s)	829
Sse9I	AATT	5 cut(s)	73, 211, 216, 708, 722
SseBI	AGGCCT	1 cut(s)	752
SsiI	CCGC	5 cut(s)	15, 120, 147, 358, 509
SspMI	CTAG	2 cut(s)	11, 792
StuI	AGGCCT	1 cut(s)	752
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	6 cut(s)	64, 70, 365, 421, 478, 577
TaiI	ACGT	2 cut(s)	41, 517
TaqI	TCGA	2 cut(s)	192, 200
TasI	AATT	5 cut(s)	73, 211, 216, 708, 722
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	489
Tru1I	TTAA	3 cut(s)	215, 251, 282
Tru9I	TTAA	3 cut(s)	215, 251, 282
TscAI	CASTG	4 cut(s)	582, 616, 719, 789
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	3 cut(s)	93, 601, 820
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	638, 782
TspGWI	ACGGA	2 cut(s)	119, 509
TspRI	CASTG	4 cut(s)	582, 616, 719, 789
Van91I	CCANNNNNTGG	1 cut(s)	611
VneI	GTGCAC	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	791
XceI	RCATGY	1 cut(s)	707
XspI	CTAG	2 cut(s)	11, 792
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.