RchiOBHm_Chr4g0399261

Anthranilate synthase alpha subunit 2, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
16420866 .. 16428203
7338 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37139

Sequence Viewer

Length: 1341 bp
ATGATGTTTGATTGGAATGCTGCTACGGCTGAGCAGTCAGAGAGGTTTTTCGAGGCTTCGAAAAATGGGAATTTAATTCCTTTATACCGAAGTATATTTTCGGATCACTTAACTCCTGTGCTTGCTTACCGGTGTCTGGTTAAGGAGGATGATAGAGACGCTCCGAGTTTTCTTTTTGAGGCAGTTGATCCGGGTTTCAAGGACTCCAATGTTGGGCGGTACAGTATTATTGGAGCGCAACCAACTATTGAGATCGTAGCAAAAGAGAACATGGTTACAGTTATGGACCATAGAGAAGGGCGTAGGACAGAGGAGATTGTGGAGGATCCAATGACTGTTCCTCAGAGAATCACGGAGGGATGGATGCCGCAACGTCTTGATGAGATGCCAGAAGCATTTTGTGGTGGATGGGTTGGTTACTTCTCCTATGATACAGTGCGTTATGTGGAGAAGAAAAAGCTGCCATTCAGTGGTGCACCACCAGATGACAGAAATCTTCCTGATCTTCATCTTGGCCTGTATGATAGTGTGATAGTGTTTGATCATGTGGAGAAGAAAGCACATGTAATTCACTGGGTGCAATTAGATCGGTATTCTTCAGTTGAGGAGGCCTTCAATGATGGGATGAATAGATTGGAAACACTGGTATCTAGAGTGCATGACATTATCACTGAGGAATACAAGGAAGCAGTTTTGAAATCTAAAGAACACATCTTAGCTGGGGATATATTTCAGATAGTATTAAGTCAGCGCTTTGAAAGGCGAACATTTGCAGACCCATTCGAAATTTACCGATCGTTAAGGATAGTTAATCCGAGTCCATACATGACTTATTTACAGGGTAGAGGCTGTATTCTGGTTGCTTCAAGTCCAGAAATTCTTACACGTGTTAAGAATAGAACAATCACCAATCGACCTCTTGCTGGGACTGTTAGAAGAGGAAAAACACCTAAAGAAGATCTAATGTTGGAAAATCAGCTTTTGAATGATGAAAAGCAATGCGCAGAGCACATTATGCTTGTTGACTTGGGGAGGAATGATGTCGGGAAGGTCTCAAAACCTGGTTCTGTCAAAGTTGAGAAGCTCATGAACATTGAGCGTTATTCCCATGTCATGCACATAAGTTCTACTTCAAATATGGGGGCTAAGAACCATGCAATTGTGATGCCTGATGCAAGTCCTGATGCCACTTTGAATGGTTTAGTTGCCGCTGGTTTTGGTGATGTAGGACAAAGGTGCATAGCACTCAGCACCGTTGTTTTTGTTGGAGGTTCAAAGTCATGGGAGAACAAACTAGTGGAATGTGGCAAATATCTGAGTCAGTGTTGGAACAAAACCTGA

Protein Analysis

446

Amino Acids

50.54

Weight (kDa)

5.9

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Anth_synt_I_N PF04715 35 - 188 2.1e-28 Anthranilate synthase component I, N terminal region
Chorismate_bind PF00425 225 - 380 9.1e-46 chorismate binding enzyme
Aldedh PF00171 345 - 421 4e-08 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1003
AccB7I CCANNNNNTGG 1 cut(s) 470
AciI CCGC 3 cut(s) 217, 368, 1209
AclWI GGATC 4 cut(s) 111, 182, 320, 333
AcsI RAATTY 3 cut(s) 70, 786, 876
AcuI CTGAAG 1 cut(s) 582
AcvI CACGTG 1 cut(s) 887
AdeI CACNNNGTG 1 cut(s) 577
AfaI GTAC 1 cut(s) 221
AfeI AGCGCT 1 cut(s) 752
AfiI CCNNNNNNNGG 4 cut(s) 136, 213, 470, 923
AflIII ACRYGT 3 cut(s) 562, 884, 886
AgeI ACCGGT 1 cut(s) 129
AgsI TTSAA 9 cut(s) 199, 616, 697, 758, 867, 985, 1134, 1195, 1275
AhlI ACTAGT 1 cut(s) 1294
AjnI CCWGG 1 cut(s) 1060
AluBI AGCT 4 cut(s) 460, 719, 979, 1084
AluI AGCT 4 cut(s) 460, 719, 979, 1084
Alw21I GWGCWC 2 cut(s) 478, 1011
Alw26I GTCTC 2 cut(s) 150, 1057
Alw44I GTGCAC 1 cut(s) 474
AlwI GGATC 4 cut(s) 111, 182, 320, 333
Aor51HI AGCGCT 1 cut(s) 752
AoxI GGCC 2 cut(s) 514, 609
ApaLI GTGCAC 1 cut(s) 474
ApeKI GCWGC 2 cut(s) 20, 460
ApoI RAATTY 3 cut(s) 70, 786, 876
AsiGI ACCGGT 1 cut(s) 129
AspLEI GCGC 3 cut(s) 238, 753, 1004
AspS9I GGNCC 1 cut(s) 286
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 898, 1232
AsuII TTCGAA 2 cut(s) 59, 783
AvaII GGWCC 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 478
BaeI ACNNNNGTAYC 2 cut(s) 630, 663
BamHI GGATCC 1 cut(s) 325
BbrPI CACGTG 1 cut(s) 887
Bbv12I GWGCWC 2 cut(s) 478, 1011
BbvI GCAGC 2 cut(s) 7, 447
BccI CCATC 3 cut(s) 354, 402, 614
BceAI ACGGC 1 cut(s) 42
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BciT130I CCWGG 1 cut(s) 1062
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 150, 1057
BcuI ACTAGT 1 cut(s) 1294
BfaI CTAG 2 cut(s) 651, 1295
BfoI RGCGCY 1 cut(s) 754
BglII AGATCT 1 cut(s) 958
BisI GCNGC 4 cut(s) 21, 368, 461, 1209
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 4 cut(s) 22, 369, 462, 1210
Bme1390I CCNGG 2 cut(s) 192, 1062
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 192, 1062
BmrI ACTGGG 1 cut(s) 583
BmsI GCATC 5 cut(s) 354, 375, 1155, 1162, 1174
BmuI ACTGGG 1 cut(s) 583
Bpu1102I GCTNAGC 1 cut(s) 30
Bpu14I TTCGAA 2 cut(s) 59, 783
BpuMI CCSGG 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 887
BsaBI GATNNNNATC 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 1057
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 213, 470, 923
Bse118I RCCGGY 1 cut(s) 129
Bse1I ACTGG 2 cut(s) 578, 648
Bse3DI GCAATG 1 cut(s) 1004
Bse8I GATNNNNATC 1 cut(s) 507
BseBI CCWGG 1 cut(s) 1062
BseGI GGATG 5 cut(s) 154, 365, 369, 413, 630
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 4 cut(s) 136, 213, 470, 923
BseMI GCAATG 1 cut(s) 1004
BseMII CTCAG 5 cut(s) 21, 356, 663, 1261, 1307
BseNI ACTGG 2 cut(s) 578, 648
BseRI GAGGAG 2 cut(s) 326, 620
BseSI GKGCMC 1 cut(s) 478
BseXI GCAGC 2 cut(s) 7, 447
BseYI CCCAGC 2 cut(s) 719, 923
Bsh1285I CGRYCG 1 cut(s) 797
BshFI GGCC 2 cut(s) 516, 611
BshTI ACCGGT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 797
BsiHKAI GWGCWC 2 cut(s) 478, 1011
BsiSI CCGG 2 cut(s) 130, 191
BslFI GGGAC 1 cut(s) 940
BslI CCNNNNNNNGG 4 cut(s) 136, 213, 470, 923
BsmAI GTCTC 2 cut(s) 150, 1057
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 940
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 2 cut(s) 516, 611
Bso31I GGTCTC 1 cut(s) 1057
Bsp119I TTCGAA 2 cut(s) 59, 783
Bsp1286I GDGCHC 2 cut(s) 478, 1011
Bsp143I GATC 9 cut(s) 103, 187, 252, 325, 502, 541, 586, 794, 958
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 3 cut(s) 217, 368, 1209
BspANI GGCC 2 cut(s) 516, 611
BspCNI CTCAG 5 cut(s) 22, 355, 664, 1260, 1308
BspHI TCATGA 1 cut(s) 1086
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 4 cut(s) 111, 182, 320, 333
BspT104I TTCGAA 2 cut(s) 59, 783
BspTNI GGTCTC 1 cut(s) 1057
BsrDI GCAATG 1 cut(s) 1004
BsrFI RCCGGY 1 cut(s) 129
BsrI ACTGG 2 cut(s) 578, 648
BssAI RCCGGY 1 cut(s) 129
BssMI GATC 9 cut(s) 103, 187, 252, 325, 502, 541, 586, 794, 958
Bst2UI CCWGG 1 cut(s) 1062
Bst4CI ACNGT 6 cut(s) 224, 280, 337, 436, 931, 1255
Bst6I CTCTTC 1 cut(s) 931
BstAPI GCANNNNNTGC 1 cut(s) 1015
BstBAI YACGTR 1 cut(s) 887
BstBI TTCGAA 2 cut(s) 59, 783
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 7 cut(s) 30, 342, 672, 715, 1146, 1247, 1316
BstF5I GGATG 5 cut(s) 154, 365, 369, 413, 630
BstH2I RGCGCY 1 cut(s) 754
BstHHI GCGC 3 cut(s) 238, 753, 1004
BstKTI GATC 9 cut(s) 106, 190, 255, 328, 505, 544, 589, 797, 961
BstMAI GTCTC 2 cut(s) 150, 1057
BstMBI GATC 9 cut(s) 103, 187, 252, 325, 502, 541, 586, 794, 958
BstMCI CGRYCG 1 cut(s) 797
BstMWI GCNNNNNNNGC 2 cut(s) 26, 1015
BstNI CCWGG 1 cut(s) 1062
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 2 cut(s) 190, 1060
BstSLI GKGCMC 1 cut(s) 478
BstV1I GCAGC 2 cut(s) 7, 447
BstX2I RGATCY 2 cut(s) 325, 958
BstYI RGATCY 2 cut(s) 325, 958
BsuRI GGCC 2 cut(s) 516, 611
BtsCI GGATG 5 cut(s) 154, 365, 369, 413, 630
BtsIMutI CAGTG 6 cut(s) 441, 475, 571, 641, 669, 1328
Cac8I GCNNGC 1 cut(s) 123
CciI TCATGA 1 cut(s) 1086
CfoI GCGC 3 cut(s) 238, 753, 1004
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 286
CseI GACGC 1 cut(s) 167
CsiI ACCWGGT 1 cut(s) 1060
Csp6I GTAC 1 cut(s) 220
CspAI ACCGGT 1 cut(s) 129
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 7 cut(s) 30, 342, 672, 715, 1146, 1247, 1316
DpnI GATC 9 cut(s) 105, 189, 254, 327, 504, 543, 588, 796, 960
DpnII GATC 9 cut(s) 103, 187, 252, 325, 502, 541, 586, 794, 958
DraIII CACNNNGTG 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 931
EarI CTCTTC 1 cut(s) 931
Eco147I AGGCCT 1 cut(s) 611
Eco31I GGTCTC 1 cut(s) 1057
Eco47I GGWCC 1 cut(s) 286
Eco47III AGCGCT 1 cut(s) 752
Eco57I CTGAAG 1 cut(s) 582
Eco72I CACGTG 1 cut(s) 887
EcoRII CCWGG 1 cut(s) 1060
Esp3I CGTCTC 1 cut(s) 150
FalI AAGNNNNNCTT 2 cut(s) 1114, 1146
FaqI GGGAC 1 cut(s) 940
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 4 cut(s) 21, 368, 461, 1209
FokI GGATG 5 cut(s) 161, 372, 376, 420, 637
Fsp4HI GCNGC 4 cut(s) 21, 368, 461, 1209
FspBI CTAG 2 cut(s) 651, 1295
FspI TGCGCA 1 cut(s) 1003
GlaI GCGC 3 cut(s) 237, 752, 1003
GluI GCNGC 4 cut(s) 21, 368, 461, 1209
GsaI CCCAGC 2 cut(s) 723, 927
HaeII RGCGCY 1 cut(s) 754
HaeIII GGCC 2 cut(s) 516, 611
HapII CCGG 2 cut(s) 130, 191
HgaI GACGC 1 cut(s) 167
HhaI GCGC 3 cut(s) 238, 753, 1004
Hin6I GCGC 3 cut(s) 236, 751, 1002
HinP1I GCGC 3 cut(s) 236, 751, 1002
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HinfI GANTC 4 cut(s) 203, 348, 817, 1318
HpaII CCGG 2 cut(s) 130, 191
HphI GGTGA 2 cut(s) 898, 1232
Hpy166II GTNNAC 2 cut(s) 476, 1024
Hpy188I TCNGA 7 cut(s) 40, 103, 165, 345, 735, 816, 1317
Hpy188III TCNNGA 7 cut(s) 377, 500, 651, 872, 1045, 1087, 1181
Hpy8I GTNNAC 2 cut(s) 476, 1024
HpyAV CCTTC 3 cut(s) 290, 622, 1042
HpyCH4III ACNGT 6 cut(s) 224, 280, 337, 436, 931, 1255
HpyCH4IV ACGT 2 cut(s) 373, 886
HpyCH4V TGCA 8 cut(s) 476, 580, 658, 773, 1117, 1157, 1175, 1239
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 1015
HpyF3I CTNAG 7 cut(s) 30, 342, 672, 715, 1146, 1247, 1316
HpySE526I ACGT 2 cut(s) 373, 886
HspAI GCGC 3 cut(s) 236, 751, 1002
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 9 cut(s) 103, 187, 252, 325, 502, 541, 586, 794, 958
LmnI GCTCC 2 cut(s) 166, 233
Lsp1109I GCAGC 2 cut(s) 7, 447
LweI GCATC 5 cut(s) 354, 375, 1155, 1162, 1174
MabI ACCWGGT 1 cut(s) 1060
MaeI CTAG 2 cut(s) 651, 1295
MaeII ACGT 2 cut(s) 373, 886
MaeIII GTNAC 2 cut(s) 274, 416
MalI GATC 9 cut(s) 105, 189, 254, 327, 504, 543, 588, 796, 960
MboI GATC 9 cut(s) 103, 187, 252, 325, 502, 541, 586, 794, 958
MboII GAAGA 7 cut(s) 463, 488, 497, 565, 588, 948, 968
MfeI CAATTG 1 cut(s) 1158
MflI RGATCY 2 cut(s) 325, 958
MhlI GDGCHC 2 cut(s) 478, 1011
MluCI AATT 7 cut(s) 70, 75, 567, 581, 786, 876, 1158
MlyI GAGTC 3 cut(s) 197, 826, 1327
MmeI TCCRAC 3 cut(s) 948, 1246, 1307
MseI TTAA 7 cut(s) 74, 110, 141, 743, 800, 810, 891
MspA1I CMGCKG 1 cut(s) 1211
MspI CCGG 2 cut(s) 130, 191
MspR9I CCNGG 2 cut(s) 192, 1062
MunI CAATTG 1 cut(s) 1158
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 1062
MwoI GCNNNNNNNGC 2 cut(s) 26, 1015
NciI CCSGG 1 cut(s) 192
NdeII GATC 9 cut(s) 103, 187, 252, 325, 502, 541, 586, 794, 958
NlaIV GGNNCC 1 cut(s) 327
NsbI TGCGCA 1 cut(s) 1003
NspI RCATGY 1 cut(s) 566
NspV TTCGAA 2 cut(s) 59, 783
PagI TCATGA 1 cut(s) 1086
PceI AGGCCT 1 cut(s) 611
PciI ACATGT 1 cut(s) 562
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 348
PflMI CCANNNNNTGG 1 cut(s) 470
PinAI ACCGGT 1 cut(s) 129
PkrI GCNGC 4 cut(s) 22, 369, 462, 1210
Ple19I CGATCG 1 cut(s) 797
PleI GAGTC 3 cut(s) 197, 825, 1326
PmaCI CACGTG 1 cut(s) 887
PmlI CACGTG 1 cut(s) 887
PpsI GAGTC 3 cut(s) 197, 825, 1326
Ppu21I YACGTR 1 cut(s) 887
PscI ACATGT 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 1060
PspCI CACGTG 1 cut(s) 887
PspFI CCCAGC 2 cut(s) 719, 923
PspGI CCWGG 1 cut(s) 1060
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 286
PsuI RGATCY 2 cut(s) 325, 958
PvuI CGATCG 1 cut(s) 797
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SaqAI TTAA 7 cut(s) 74, 110, 141, 743, 800, 810, 891
SatI GCNGC 4 cut(s) 21, 368, 461, 1209
Sau3AI GATC 9 cut(s) 103, 187, 252, 325, 502, 541, 586, 794, 958
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 3 cut(s) 197, 826, 1327
ScrFI CCNGG 2 cut(s) 192, 1062
SduI GDGCHC 2 cut(s) 478, 1011
SexAI ACCWGGT 1 cut(s) 1060
SfaNI GCATC 5 cut(s) 354, 375, 1155, 1162, 1174
SfuI TTCGAA 2 cut(s) 59, 783
SinI GGWCC 1 cut(s) 286
SpeI ACTAGT 1 cut(s) 1294
Sse9I AATT 7 cut(s) 70, 75, 567, 581, 786, 876, 1158
SseBI AGGCCT 1 cut(s) 611
SsiI CCGC 3 cut(s) 217, 368, 1209
SspMI CTAG 2 cut(s) 651, 1295
StuI AGGCCT 1 cut(s) 611
StyD4I CCNGG 2 cut(s) 190, 1060
TaaI ACNGT 6 cut(s) 224, 280, 337, 436, 931, 1255
TaiI ACGT 2 cut(s) 376, 889
TaqI TCGA 4 cut(s) 51, 59, 783, 913
TasI AATT 7 cut(s) 70, 75, 567, 581, 786, 876, 1158
TauI GCSGC 2 cut(s) 370, 1211
TfiI GAWTC 1 cut(s) 348
Tru1I TTAA 7 cut(s) 74, 110, 141, 743, 800, 810, 891
Tru9I TTAA 7 cut(s) 74, 110, 141, 743, 800, 810, 891
TscAI CASTG 6 cut(s) 441, 475, 578, 648, 676, 1328
TseI GCWGC 2 cut(s) 20, 460
TspDTI ATGAA 4 cut(s) 497, 641, 1005, 1103
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 6 cut(s) 441, 475, 578, 648, 676, 1328
Van91I CCANNNNNTGG 1 cut(s) 470
VneI GTGCAC 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 3 cut(s) 70, 786, 876
XbaI TCTAGA 1 cut(s) 650
XceI RCATGY 1 cut(s) 566
XspI CTAG 2 cut(s) 651, 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.