Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001870

Physical Location & Seq

Genomic Coordinates Forward (+)

36308000 .. 36310464

Gene Structure 2465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG347800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGACAAGTGAGGAATACAAGGAAGCAGTTTTGAAATCTAAAGAACACATCTTAGCTGGGGATATATTTCAGATAGTATTAAGTCAGCGCTTTGAAAGGCGAACATTTGCAGACCCATTCGAAATTTACCGATCGTTAAGGATAGTTAATCCGAGTCCATACATGACTTATTTACAGGGTAGAGCCTGTATTCTGGTTGCTTCAAGTCCAGAAATTCTTACACGTGTTAAGAATAGAACAATCACCAATCGACCTCTTGCTGGGACTGTTAGAAGAGGAAAAACACCTAAAGAAGATCTAATGTTGGAAAATCAGCTTTTGAATGATGAAAAGCAATGCGCAGAGCACATTATGCTTGTTGACTTGGGGAGGAATGATGTCGGGAAGGTCTCAAAACCTGGTTCTGTCAAAGTTGAGAAGCTCATGAACATTGAGCGTTATTCCCATGTCATGCACATAAGTTCTACTGTCACTGGAGAGTTGCTTGATCATTTAAGTAGCTGGGATGTTCTACGAACTGCATTGCCGGTTGGGACTGTCAGCGGAGCACCAAAGGTAAAAGCCATGGAGCTGATTGATGAGCTGGAAGTGACTAGACGTGGTCCATACAGTGGCGGTTTTGGAGGAATTTCATTTTCTGGAAACATGGACATCGCCCTTGCTCTGAGAACTATTGTTTTCCCAACTAGCTTTCGATATGATACAATGTATTCATACAAGGACACAAATAAGCGGCGAGAGTGGGTTGCTCATCTCCAAGCCGGAGCTGGAATTGTGGCCGACAGTGTTCCAGCTGAGGAGCAGAGAGAGTGTGAGAACAAAGCTGCTGGTCTTGCACGGGCTATTGATCTTGCAGAGTCATCGTTTGTTGATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019438 GO:0019752 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

292

Amino Acids

32.62

Weight (kDa)

7.03

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chorismate_bind	PF00425	3 - 274	5.4e-80	chorismate binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29690 AT2G29690
fragaria_vesca	FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350
malus_domestica	MD00G1120400.v1.1 MD03G1072500.v1.1 MD11G1077400.v1.1 MD11G1078000.v1.1 MD11G1078700.v1.1
prunus_persica	Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1
pyrus_communis	pycom03g05870 pycom11g06530 pycom11g06550 pycom11g06580
rosa_chinensis	RchiOBHm_Chr2g0157091 RchiOBHm_Chr4g0399261 RchiOBHm_Chr5g0068931
rosa_laevigata	RLG00000036024
rosa_multiflora	Rmu_sc0003000.1_g000002 Rmu_sc0006282.1_g000030 Rmu_sc0042660.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011770
rosa_rugosa	Rorug01G0059300 Rorug01G0059400 Rorug07G0214300
rosa_samantha	Rh2BG537500 Rh2DG546300 Rh5AG451600 Rh5BG470700 Rh5CG493100 Rh5DG483500 Rh7BG347700 Rh7BG347800 Rh7DG336200 Rh7DG336300
rosa_wichuraiana	Rw2G031030 Rw2G043250 Rw5G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	340
AccB7I	CCANNNNNTGG	1 cut(s)	611
AciI	CCGC	3 cut(s)	543, 615, 733
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	3 cut(s)	123, 213, 627
AcvI	CACGTG	1 cut(s)	224
AfeI	AGCGCT	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	260, 611
AflIII	ACRYGT	2 cut(s)	221, 223
AgsI	TTSAA	4 cut(s)	34, 95, 204, 322
AjiI	CACGTC	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	397
Alw21I	GWGCWC	2 cut(s)	348, 550
Alw26I	GTCTC	1 cut(s)	394
Aor51HI	AGCGCT	1 cut(s)	89
AoxI	GGCC	1 cut(s)	777
ApeKI	GCWGC	1 cut(s)	824
ApoI	RAATTY	3 cut(s)	123, 213, 627
AspLEI	GCGC	2 cut(s)	90, 341
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	602
BbrPI	CACGTG	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	348, 550
BbvCI	CCTCAGC	1 cut(s)	795
BbvI	GCAGC	1 cut(s)	811
BcgI	CGANNNNNNTGC	2 cut(s)	843, 877
BciT130I	CCWGG	1 cut(s)	399
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	2 cut(s)	594, 687
BfoI	RGCGCY	1 cut(s)	91
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	2 cut(s)	734, 825
BlsI	GCNGC	2 cut(s)	735, 826
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	1 cut(s)	602
BmgBI	CACGTC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	602
BmrFI	CCNGG	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	795
Bpu14I	TTCGAA	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 611
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	2 cut(s)	341, 521
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	260, 611
BseMI	GCAATG	2 cut(s)	341, 521
BseMII	CTCAG	2 cut(s)	656, 786
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	812
BseXI	GCAGC	1 cut(s)	811
BseYI	CCCAGC	3 cut(s)	56, 260, 501
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	779
BsiEI	CGRYCG	1 cut(s)	134
BsiHKAI	GWGCWC	2 cut(s)	348, 550
BsiSI	CCGG	2 cut(s)	527, 762
BslFI	GGGAC	2 cut(s)	277, 547
BslI	CCNNNNNNNGG	2 cut(s)	260, 611
BsmAI	GTCTC	1 cut(s)	394
BsmFI	GGGAC	2 cut(s)	277, 547
BsnI	GGCC	1 cut(s)	779
Bso31I	GGTCTC	1 cut(s)	394
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	348, 550
Bsp143I	GATC	4 cut(s)	131, 295, 487, 847
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	3 cut(s)	543, 615, 733
BspANI	GGCC	1 cut(s)	779
BspCNI	CTCAG	2 cut(s)	657, 787
BspHI	TCATGA	1 cut(s)	423
BspT104I	TTCGAA	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	394
BsrDI	GCAATG	2 cut(s)	341, 521
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	526
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	4 cut(s)	131, 295, 487, 847
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	5 cut(s)	268, 469, 538, 611, 785
Bst6I	CTCTTC	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	52, 665, 795
BstDSI	CCRYGG	1 cut(s)	564
BstF5I	GGATG	1 cut(s)	511
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	90, 341
BstKTI	GATC	4 cut(s)	134, 298, 490, 850
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	4 cut(s)	131, 295, 487, 847
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 833
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	811
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	779
BtgI	CCRYGG	1 cut(s)	564
BtgZI	GCGATG	1 cut(s)	637
BtrI	CACGTC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	3 cut(s)	471, 616, 790
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	2 cut(s)	90, 341
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	602
CsiI	ACCWGGT	1 cut(s)	397
CviAII	CATG	6 cut(s)	163, 424, 446, 451, 565, 646
DdeI	CTNAG	3 cut(s)	52, 665, 795
DpnI	GATC	4 cut(s)	133, 297, 489, 849
DpnII	GATC	4 cut(s)	131, 295, 487, 847
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	564
Eco31I	GGTCTC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	602
Eco47III	AGCGCT	1 cut(s)	89
Eco72I	CACGTG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	6 cut(s)	166, 427, 449, 454, 568, 649
FaqI	GGGAC	2 cut(s)	277, 547
FatI	CATG	6 cut(s)	162, 423, 445, 450, 564, 645
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	734, 825
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	2 cut(s)	734, 825
FspBI	CTAG	2 cut(s)	594, 687
FspI	TGCGCA	1 cut(s)	340
GlaI	GCGC	2 cut(s)	89, 340
GluI	GCNGC	2 cut(s)	734, 825
GsaI	CCCAGC	3 cut(s)	60, 264, 505
GsuI	CTGGAG	1 cut(s)	495
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	779
HapII	CCGG	2 cut(s)	527, 762
HhaI	GCGC	2 cut(s)	90, 341
Hin1II	CATG	6 cut(s)	166, 427, 449, 454, 568, 649
Hin6I	GCGC	2 cut(s)	88, 339
HinP1I	GCGC	2 cut(s)	88, 339
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	154, 857
HpaII	CCGG	2 cut(s)	527, 762
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	3 cut(s)	72, 153, 666
Hpy188III	TCNNGA	4 cut(s)	209, 382, 424, 639
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	5 cut(s)	268, 469, 538, 611, 785
HpyCH4IV	ACGT	2 cut(s)	223, 598
HpyCH4V	TGCA	5 cut(s)	110, 454, 521, 836, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 833
HpyF3I	CTNAG	3 cut(s)	52, 665, 795
HpySE526I	ACGT	2 cut(s)	223, 598
Hsp92II	CATG	6 cut(s)	166, 427, 449, 454, 568, 649
HspAI	GCGC	2 cut(s)	88, 339
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	131, 295, 487, 847
LmnI	GCTCC	4 cut(s)	545, 568, 764, 799
Lsp1109I	GCAGC	1 cut(s)	811
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	2 cut(s)	594, 687
MaeII	ACGT	2 cut(s)	223, 598
MaeIII	GTNAC	2 cut(s)	469, 589
MalI	GATC	4 cut(s)	133, 297, 489, 849
MboI	GATC	4 cut(s)	131, 295, 487, 847
MboII	GAAGA	2 cut(s)	285, 305
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	348, 550
MluCI	AATT	4 cut(s)	123, 213, 627, 771
MlyI	GAGTC	2 cut(s)	163, 866
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	6 cut(s)	4, 264, 269, 363, 617, 790
MseI	TTAA	5 cut(s)	80, 137, 147, 228, 494
MspA1I	CMGCKG	2 cut(s)	543, 794
MspI	CCGG	2 cut(s)	527, 762
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	352, 833
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	4 cut(s)	131, 295, 487, 847
NlaIII	CATG	6 cut(s)	166, 427, 449, 454, 568, 649
NmuCI	GTSAC	2 cut(s)	469, 589
NsbI	TGCGCA	1 cut(s)	340
NspV	TTCGAA	1 cut(s)	120
PagI	TCATGA	1 cut(s)	423
PflFI	GACNNNGTC	1 cut(s)	600
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	735, 826
Ple19I	CGATCG	1 cut(s)	134
PleI	GAGTC	2 cut(s)	162, 865
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
PpsI	GAGTC	2 cut(s)	162, 865
Ppu21I	YACGTR	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	397
PspCI	CACGTG	1 cut(s)	224
PspFI	CCCAGC	3 cut(s)	56, 260, 501
PspGI	CCWGG	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	295
PsyI	GACNNNGTC	1 cut(s)	600
PvuI	CGATCG	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	794
SaqAI	TTAA	5 cut(s)	80, 137, 147, 228, 494
SatI	GCNGC	2 cut(s)	734, 825
Sau3AI	GATC	4 cut(s)	131, 295, 487, 847
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	2 cut(s)	163, 866
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	2 cut(s)	348, 550
SexAI	ACCWGGT	1 cut(s)	397
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	1 cut(s)	602
Sse9I	AATT	4 cut(s)	123, 213, 627, 771
SsiI	CCGC	3 cut(s)	543, 615, 733
SspMI	CTAG	2 cut(s)	594, 687
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	5 cut(s)	268, 469, 538, 611, 785
TaiI	ACGT	2 cut(s)	226, 601
TaqI	TCGA	3 cut(s)	120, 250, 694
TasI	AATT	4 cut(s)	123, 213, 627, 771
TauI	GCSGC	1 cut(s)	736
Tru1I	TTAA	5 cut(s)	80, 137, 147, 228, 494
Tru9I	TTAA	5 cut(s)	80, 137, 147, 228, 494
TscAI	CASTG	3 cut(s)	478, 616, 790
TseFI	GTSAC	2 cut(s)	469, 589
TseI	GCWGC	1 cut(s)	824
Tsp45I	GTSAC	2 cut(s)	469, 589
TspDTI	ATGAA	4 cut(s)	342, 440, 621, 702
TspRI	CASTG	3 cut(s)	478, 616, 790
Tth111I	GACNNNGTC	1 cut(s)	600
Van91I	CCANNNNNTGG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	3 cut(s)	123, 213, 627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XspI	CTAG	2 cut(s)	594, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.