Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042660.1

Orthogroup ID

OG0001870

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 691

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042660.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 385 bp

aagtagctgggatgttctacgaactgcattgccggttgggactgtcagcggagcaccaaaggtaaaagccatggagctgattgatgagctggaagtgactagacgtggtccatacagtggcggttttggaggaatttcattttctggaaacatggacatcgcccttgctctgagaactattgttttcccaactagctttcgatatgatacaatgtattcatacaaggacacaaataagcggcgagagtgggttgctcatctccaagccggagctggaattgtggccgacagtgttccagctgaggagcagagagagtgtgagaacaaagctgctggtcttgcacgggctatcgatcttgcagagtcatcgtttgttgataactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019438 GO:0019752 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

127

Amino Acids

13.79

Weight (kDa)

5.14

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29690 AT2G29690
fragaria_vesca	FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350
malus_domestica	MD00G1120400.v1.1 MD03G1072500.v1.1 MD11G1077400.v1.1 MD11G1078000.v1.1 MD11G1078700.v1.1
prunus_persica	Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1
pyrus_communis	pycom03g05870 pycom11g06530 pycom11g06550 pycom11g06580
rosa_chinensis	RchiOBHm_Chr2g0157091 RchiOBHm_Chr4g0399261 RchiOBHm_Chr5g0068931
rosa_laevigata	RLG00000036024
rosa_multiflora	Rmu_sc0003000.1_g000002 Rmu_sc0006282.1_g000030 Rmu_sc0042660.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011770
rosa_rugosa	Rorug01G0059300 Rorug01G0059400 Rorug07G0214300
rosa_samantha	Rh2BG537500 Rh2DG546300 Rh5AG451600 Rh5BG470700 Rh5CG493100 Rh5DG483500 Rh7BG347700 Rh7BG347800 Rh7DG336200 Rh7DG336300
rosa_wichuraiana	Rw2G031030 Rw2G043250 Rw5G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AciI	CCGC	3 cut(s)	49, 121, 239
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	117
AjiI	CACGTC	1 cut(s)	105
AluBI	AGCT	7 cut(s)	7, 77, 89, 196, 273, 300, 330
AluI	AGCT	7 cut(s)	7, 77, 89, 196, 273, 300, 330
Alw21I	GWGCWC	1 cut(s)	56
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	56
BbvCI	CCTCAGC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BfaI	CTAG	2 cut(s)	100, 193
BisI	GCNGC	2 cut(s)	240, 331
BlsI	GCNGC	2 cut(s)	241, 332
Bme18I	GGWCC	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	162, 292
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	317
BseYI	CCCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	285
BshVI	ATCGAT	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	33, 268
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	353
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	3 cut(s)	49, 121, 239
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	163, 293
BspDI	ATCGAT	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	44, 117, 291
BstDEI	CTNAG	2 cut(s)	171, 301
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	17
BstKTI	GATC	1 cut(s)	356
BstMBI	GATC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	317
Bsu15I	ATCGAT	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	285
BsuTUI	ATCGAT	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	122, 296
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	108
ClaI	ATCGAT	1 cut(s)	352
CviAII	CATG	2 cut(s)	71, 152
DdeI	CTNAG	2 cut(s)	171, 301
DpnI	GATC	1 cut(s)	355
DpnII	GATC	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	2 cut(s)	74, 155
FaiI	YATR	5 cut(s)	72, 113, 153, 205, 221
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	2 cut(s)	70, 151
Fnu4HI	GCNGC	2 cut(s)	240, 331
FokI	GGATG	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	240, 331
FspBI	CTAG	2 cut(s)	100, 193
GluI	GCNGC	2 cut(s)	240, 331
GsaI	CCCAGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	2 cut(s)	33, 268
Hin1II	CATG	2 cut(s)	74, 155
HinfI	GANTC	1 cut(s)	363
HpaII	CCGG	2 cut(s)	33, 268
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	145
HpyCH4III	ACNGT	3 cut(s)	44, 117, 291
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	3 cut(s)	27, 342, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	2 cut(s)	171, 301
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	74, 155
Kzo9I	GATC	1 cut(s)	353
LmnI	GCTCC	4 cut(s)	51, 74, 270, 305
LpnPI	CCDG	7 cut(s)	46, 75, 130, 259, 281, 310, 319
Lsp1109I	GCAGC	1 cut(s)	317
MaeI	CTAG	2 cut(s)	100, 193
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	355
MboI	GATC	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	133, 277
MlyI	GAGTC	1 cut(s)	372
MnlI	CCTC	2 cut(s)	123, 296
MspA1I	CMGCKG	2 cut(s)	49, 300
MspI	CCGG	2 cut(s)	33, 268
MwoI	GCNNNNNNNGC	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	1 cut(s)	353
NlaIII	CATG	2 cut(s)	74, 155
NmuCI	GTSAC	1 cut(s)	95
PflFI	GACNNNGTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	241, 332
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	108
PsyI	GACNNNGTC	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	300
SatI	GCNGC	2 cut(s)	240, 331
Sau3AI	GATC	1 cut(s)	353
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	9 cut(s)	9, 64, 79, 91, 107, 198, 275, 302, 332
SinI	GGWCC	1 cut(s)	108
Sse9I	AATT	2 cut(s)	133, 277
SsiI	CCGC	3 cut(s)	49, 121, 239
SspMI	CTAG	2 cut(s)	100, 193
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	3 cut(s)	44, 117, 291
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	2 cut(s)	200, 352
TasI	AATT	2 cut(s)	133, 277
TauI	GCSGC	1 cut(s)	242
TscAI	CASTG	2 cut(s)	122, 296
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	330
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	127, 208
TspRI	CASTG	2 cut(s)	122, 296
Tth111I	GACNNNGTC	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	270
XspI	CTAG	2 cut(s)	100, 193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.