Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006282.1

Orthogroup ID

OG0001870

Physical Location & Seq

Genomic Coordinates Forward (+)

124472 .. 126853

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006282.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgatgtatggagttcttgtgaaaaatttggttatagcactggaaatatgtttaaagtattctaatgtgaggtttgattggaatgctgctacagctgagcagtcagagaggtttttcgaggcttcgaaaaatgggaatttaattcctttataccgaagtatattttcggatcacttaactcctgtgcttgcttaccggtgtctggttaaggaggatgatagagacgctccgagttttctttttgaggcagttgatccgggtttcaaggactccaatgttgggcggtacagtattattggagcgcaaccaactattgagatcatagcaaaagagaacatggttacagttatggaccatagagaagggcgtaggacagaggagattgtggaggatccaatgactgttcctcagagaatcacggagggatggatgccgcaacgtcttgatgagatgccagaagcattttgtggtggatgggttggttacttctcttatgatacagtgcgttatgtggagaagaaaaagctgccattcagtggtgcaccaccagatgacagaaatcttcctgatcttcatcttggcctgtatgatagtgtgatagtgtttgatcatgtggagaagaaagcacatgtaattcactgggtgcaattagatcggtattcttcagttgaggaggccttcaatgatgggatgaatagattggaaacactggtatctagagtgcatgacattatcacaattgcagaaattgttgcagctcatgcaacaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019438 GO:0019752 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

257

Amino Acids

29.39

Weight (kDa)

5.06

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29690 AT2G29690
fragaria_vesca	FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350
malus_domestica	MD00G1120400.v1.1 MD03G1072500.v1.1 MD11G1077400.v1.1 MD11G1078000.v1.1 MD11G1078700.v1.1
prunus_persica	Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1
pyrus_communis	pycom03g05870 pycom11g06530 pycom11g06550 pycom11g06580
rosa_chinensis	RchiOBHm_Chr2g0157091 RchiOBHm_Chr4g0399261 RchiOBHm_Chr5g0068931
rosa_laevigata	RLG00000036024
rosa_multiflora	Rmu_sc0003000.1_g000002 Rmu_sc0006282.1_g000030 Rmu_sc0042660.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011770
rosa_rugosa	Rorug01G0059300 Rorug01G0059400 Rorug07G0214300
rosa_samantha	Rh2BG537500 Rh2DG546300 Rh5AG451600 Rh5BG470700 Rh5CG493100 Rh5DG483500 Rh7BG347700 Rh7BG347800 Rh7DG336200 Rh7DG336300
rosa_wichuraiana	Rw2G031030 Rw2G043250 Rw5G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	536
AciI	CCGC	2 cut(s)	283, 434
AclWI	GGATC	4 cut(s)	177, 248, 386, 399
AcsI	RAATTY	2 cut(s)	25, 136
AcuI	CTGAAG	1 cut(s)	648
AdeI	CACNNNGTG	1 cut(s)	643
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	3 cut(s)	202, 279, 536
AflIII	ACRYGT	1 cut(s)	628
AgeI	ACCGGT	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	265, 682
AluBI	AGCT	3 cut(s)	95, 526, 758
AluI	AGCT	3 cut(s)	95, 526, 758
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	1 cut(s)	216
Alw44I	GTGCAC	1 cut(s)	540
AlwI	GGATC	4 cut(s)	177, 248, 386, 399
AoxI	GGCC	2 cut(s)	580, 675
ApaLI	GTGCAC	1 cut(s)	540
ApeKI	GCWGC	3 cut(s)	86, 526, 755
ApoI	RAATTY	2 cut(s)	25, 136
AsiGI	ACCGGT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	258
AsuII	TTCGAA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	544
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BamHI	GGATCC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	3 cut(s)	73, 513, 767
BccI	CCATC	3 cut(s)	420, 468, 680
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BclI	TGATCA	1 cut(s)	607
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	717
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	4 cut(s)	87, 434, 527, 756
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	4 cut(s)	88, 435, 528, 757
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	2 cut(s)	420, 441
BmuI	ACTGGG	1 cut(s)	649
Bpu1102I	GCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	573
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 279, 536
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	3 cut(s)	45, 644, 714
Bse8I	GATNNNNATC	1 cut(s)	573
BseGI	GGATG	5 cut(s)	220, 431, 435, 479, 696
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	3 cut(s)	202, 279, 536
BseMII	CTCAG	2 cut(s)	87, 422
BseNI	ACTGG	3 cut(s)	45, 644, 714
BseRI	GAGGAG	2 cut(s)	392, 686
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	3 cut(s)	73, 513, 767
BshFI	GGCC	2 cut(s)	582, 677
BshTI	ACCGGT	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	544
BsiSI	CCGG	2 cut(s)	196, 257
BslI	CCNNNNNNNGG	3 cut(s)	202, 279, 536
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	582, 677
Bsp119I	TTCGAA	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	7 cut(s)	169, 253, 318, 391, 568, 607, 652
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	2 cut(s)	283, 434
BspANI	GGCC	2 cut(s)	582, 677
BspCNI	CTCAG	2 cut(s)	88, 421
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	4 cut(s)	177, 248, 386, 399
BspT104I	TTCGAA	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	3 cut(s)	45, 644, 714
BssAI	RCCGGY	1 cut(s)	195
BssMI	GATC	7 cut(s)	169, 253, 318, 391, 568, 607, 652
Bst4CI	ACNGT	4 cut(s)	290, 346, 403, 502
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	96, 408
BstF5I	GGATG	5 cut(s)	220, 431, 435, 479, 696
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	7 cut(s)	172, 256, 321, 394, 571, 610, 655
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	7 cut(s)	169, 253, 318, 391, 568, 607, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 761
BstNSI	RCATGY	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	544
BstV1I	GCAGC	3 cut(s)	73, 513, 767
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	582, 677
BtsCI	GGATG	5 cut(s)	220, 431, 435, 479, 696
BtsIMutI	CAGTG	5 cut(s)	38, 507, 541, 637, 707
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	352
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	286
CspAI	ACCGGT	1 cut(s)	195
CviAII	CATG	5 cut(s)	337, 611, 629, 725, 761
CviJI	RGCY	6 cut(s)	95, 122, 526, 582, 677, 758
CviKI_1	RGCY	6 cut(s)	95, 122, 526, 582, 677, 758
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	96, 408
DpnI	GATC	7 cut(s)	171, 255, 320, 393, 570, 609, 654
DpnII	GATC	7 cut(s)	169, 253, 318, 391, 568, 607, 652
DraI	TTTAAA	1 cut(s)	54
DraIII	CACNNNGTG	1 cut(s)	643
Eco147I	AGGCCT	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	648
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	5 cut(s)	340, 614, 632, 728, 764
FatI	CATG	5 cut(s)	336, 610, 628, 724, 760
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	87, 434, 527, 756
FokI	GGATG	5 cut(s)	227, 438, 442, 486, 703
Fsp4HI	GCNGC	4 cut(s)	87, 434, 527, 756
FspBI	CTAG	1 cut(s)	717
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	4 cut(s)	87, 434, 527, 756
HaeIII	GGCC	2 cut(s)	582, 677
HapII	CCGG	2 cut(s)	196, 257
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	5 cut(s)	340, 614, 632, 728, 764
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HinfI	GANTC	2 cut(s)	269, 414
HpaII	CCGG	2 cut(s)	196, 257
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188I	TCNGA	4 cut(s)	106, 169, 231, 411
Hpy188III	TCNNGA	3 cut(s)	443, 566, 717
Hpy8I	GTNNAC	1 cut(s)	542
HpyAV	CCTTC	2 cut(s)	356, 688
HpyCH4III	ACNGT	4 cut(s)	290, 346, 403, 502
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	6 cut(s)	542, 646, 724, 743, 755, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 761
HpyF3I	CTNAG	2 cut(s)	96, 408
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	5 cut(s)	340, 614, 632, 728, 764
HspAI	GCGC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	7 cut(s)	169, 253, 318, 391, 568, 607, 652
LmnI	GCTCC	2 cut(s)	232, 299
Lsp1109I	GCAGC	3 cut(s)	73, 513, 767
LweI	GCATC	2 cut(s)	420, 441
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	2 cut(s)	340, 482
MalI	GATC	7 cut(s)	171, 255, 320, 393, 570, 609, 654
MboI	GATC	7 cut(s)	169, 253, 318, 391, 568, 607, 652
MboII	GAAGA	5 cut(s)	529, 554, 563, 631, 654
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	7 cut(s)	25, 136, 141, 633, 647, 738, 747
MlyI	GAGTC	1 cut(s)	263
MseI	TTAA	4 cut(s)	53, 140, 176, 207
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	2 cut(s)	196, 257
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	92, 761
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	7 cut(s)	169, 253, 318, 391, 568, 607, 652
NlaIII	CATG	5 cut(s)	340, 614, 632, 728, 764
NlaIV	GGNNCC	1 cut(s)	393
NspI	RCATGY	1 cut(s)	632
NspV	TTCGAA	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	677
PciI	ACATGT	1 cut(s)	628
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	414
PflMI	CCANNNNNTGG	1 cut(s)	536
PinAI	ACCGGT	1 cut(s)	195
PkrI	GCNGC	4 cut(s)	88, 435, 528, 757
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PscI	ACATGT	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	4 cut(s)	53, 140, 176, 207
SatI	GCNGC	4 cut(s)	87, 434, 527, 756
Sau3AI	GATC	7 cut(s)	169, 253, 318, 391, 568, 607, 652
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	544
SetI	ASST	6 cut(s)	74, 97, 113, 442, 528, 760
SfaNI	GCATC	2 cut(s)	420, 441
SfcI	CTRYAG	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	125
SinI	GGWCC	1 cut(s)	352
Sse9I	AATT	7 cut(s)	25, 136, 141, 633, 647, 738, 747
SseBI	AGGCCT	1 cut(s)	677
SsiI	CCGC	2 cut(s)	283, 434
SspMI	CTAG	1 cut(s)	717
StuI	AGGCCT	1 cut(s)	677
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	4 cut(s)	290, 346, 403, 502
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	2 cut(s)	117, 125
TasI	AATT	7 cut(s)	25, 136, 141, 633, 647, 738, 747
TauI	GCSGC	1 cut(s)	436
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	4 cut(s)	53, 140, 176, 207
Tru9I	TTAA	4 cut(s)	53, 140, 176, 207
TscAI	CASTG	5 cut(s)	45, 507, 541, 644, 714
TseI	GCWGC	3 cut(s)	86, 526, 755
TspDTI	ATGAA	2 cut(s)	563, 707
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	5 cut(s)	45, 507, 541, 644, 714
Van91I	CCANNNNNTGG	1 cut(s)	536
VneI	GTGCAC	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	2 cut(s)	25, 136
XbaI	TCTAGA	1 cut(s)	716
XceI	RCATGY	1 cut(s)	632
XspI	CTAG	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.