Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001870

Physical Location & Seq

Genomic Coordinates Reverse (-)

5024315 .. 5025985

Gene Structure 1671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGTATATACTTCCATGATCAGGCTAGAGGCTGTATTCTGGTTGCTTCAAGTCCAGAAATTCTGACACTTGTCAAGCAAACGATCACCAACTGGCCTCTTGCTGGGACTGTTAGAAGAGGAAAAACACCTAAAGAGGATTTATTGCTGGAAAAGCAGCTTTTGAATGATGAAAAGCAATTTGCAGAGCATATTATGCTTGTAGACTTGGGGAGGAATGTTGTCGGGAAGGTCTCAAAACCTGGTTCTGTCAAGGTTGAGAAGCTCATGAACATTGAGCGTTATTCCCATGTCATGCGTATAAGTTCAACAGTCACTGGATGGTTACTTGATGATTTAACTAGCTGGGATGTTCTGCGTACTGCGTTGCCAGTTGGGACTGTCAGTGGAGCACCGAAGGTGAAAGCCATGGAGCTGATCGATAAGCTGGAAGTGACTAGACGTGGTCCATATAGTGGTGGCTTTGGGGGAATTTCGTTTTCTGGCAACATGGACATTGCCCTTGCTCTGAGAACTATTGTTTTCCCAACTAGCTTTCGGTATGATACAATGTATTCATACAAGGACGCAAACAAGCGCAGAGAGTGGGTCGCTCATCTCCAAGCCGGGGCAGGAATTGTCGCTGACAGTGATCCAGCTGATGAGCAGAGGGAGTGCGAGAACAAAGCTGCTTCGCTTGCCCACACTATTGATCTTGCAGAGTCCTCGTTCGTTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019438 GO:0019752 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

241

Amino Acids

26.56

Weight (kDa)

6.53

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29690 AT2G29690
fragaria_vesca	FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350
malus_domestica	MD00G1120400.v1.1 MD03G1072500.v1.1 MD11G1077400.v1.1 MD11G1078000.v1.1 MD11G1078700.v1.1
prunus_persica	Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1
pyrus_communis	pycom03g05870 pycom11g06530 pycom11g06550 pycom11g06580
rosa_chinensis	RchiOBHm_Chr2g0157091 RchiOBHm_Chr4g0399261 RchiOBHm_Chr5g0068931
rosa_laevigata	RLG00000036024
rosa_multiflora	Rmu_sc0003000.1_g000002 Rmu_sc0006282.1_g000030 Rmu_sc0042660.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011770
rosa_rugosa	Rorug01G0059300 Rorug01G0059400 Rorug07G0214300
rosa_samantha	Rh2BG537500 Rh2DG546300 Rh5AG451600 Rh5BG470700 Rh5CG493100 Rh5DG483500 Rh7BG347700 Rh7BG347800 Rh7DG336200 Rh7DG336300
rosa_wichuraiana	Rw2G031030 Rw2G043250 Rw5G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	455
AccI	GTMKAC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	626
AcsI	RAATTY	2 cut(s)	60, 471
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	4 cut(s)	22, 104, 455, 607
AgsI	TTSAA	3 cut(s)	51, 166, 309
AjiI	CACGTC	1 cut(s)	443
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	8 cut(s)	160, 265, 345, 415, 427, 534, 638, 668
AluI	AGCT	8 cut(s)	160, 265, 345, 415, 427, 534, 638, 668
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	626
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	157, 668
ApoI	RAATTY	2 cut(s)	60, 471
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	446
AsuC2I	CCSGG	1 cut(s)	607
AsuHPI	GGTGA	2 cut(s)	79, 412
AvaII	GGWCC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	169, 655
BccI	CCATC	1 cut(s)	315
BcgI	CGANNNNNNTGC	2 cut(s)	687, 721
BciT130I	CCWGG	1 cut(s)	243
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	4 cut(s)	27, 342, 438, 531
BisI	GCNGC	2 cut(s)	158, 669
BlsI	GCNGC	2 cut(s)	159, 670
Bme1390I	CCNGG	2 cut(s)	243, 607
Bme18I	GGWCC	1 cut(s)	446
BmgBI	CACGTC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	446
BmrFI	CCNGG	2 cut(s)	243, 607
BoxI	GACNNNNGTC	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	607
Bsa29I	ATCGAT	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	408, 606
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 104, 455, 607
Bse1I	ACTGG	3 cut(s)	98, 322, 371
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	408, 606
BseGI	GGATG	2 cut(s)	326, 355
BseLI	CCNNNNNNNGG	4 cut(s)	22, 104, 455, 607
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	3 cut(s)	98, 322, 371
BseXI	GCAGC	2 cut(s)	169, 655
BseYI	CCCAGC	2 cut(s)	104, 345
BshFI	GGCC	1 cut(s)	97
BshVI	ATCGAT	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	606
BslFI	GGGAC	2 cut(s)	121, 391
BslI	CCNNNNNNNGG	4 cut(s)	22, 104, 455, 607
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	2 cut(s)	121, 391
BsnI	GGCC	1 cut(s)	97
Bso31I	GGTCTC	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	5 cut(s)	19, 84, 417, 631, 691
Bsp19I	CCATGG	1 cut(s)	408
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	501
BspDI	ATCGAT	1 cut(s)	420
BspHI	TCATGA	1 cut(s)	267
BspPI	GGATC	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	495
BsrI	ACTGG	3 cut(s)	98, 322, 371
BssECI	CCNNGG	2 cut(s)	408, 606
BssMI	GATC	5 cut(s)	19, 84, 417, 631, 691
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	4 cut(s)	112, 313, 382, 629
Bst6I	CTCTTC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	678
BstDEI	CTNAG	1 cut(s)	509
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	2 cut(s)	326, 355
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	5 cut(s)	22, 87, 420, 634, 694
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	5 cut(s)	19, 84, 417, 631, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 196, 677
BstNI	CCWGG	1 cut(s)	243
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	241, 605
BstV1I	GCAGC	2 cut(s)	169, 655
Bsu15I	ATCGAT	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	97
BsuTUI	ATCGAT	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	326, 355
BtsIMutI	CAGTG	3 cut(s)	315, 391, 634
Cac8I	GCNNGC	1 cut(s)	678
CaiI	CAGNNNCTG	1 cut(s)	317
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	1 cut(s)	446
ClaI	ATCGAT	1 cut(s)	420
CseI	GACGC	1 cut(s)	575
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	6 cut(s)	17, 268, 290, 295, 409, 490
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	1 cut(s)	509
DpnI	GATC	5 cut(s)	21, 86, 419, 633, 693
DpnII	GATC	5 cut(s)	19, 84, 417, 631, 691
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	6 cut(s)	20, 271, 293, 298, 412, 493
FaqI	GGGAC	2 cut(s)	121, 391
FatI	CATG	6 cut(s)	16, 267, 289, 294, 408, 489
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	158, 669
FokI	GGATG	2 cut(s)	333, 362
Fsp4HI	GCNGC	2 cut(s)	158, 669
FspBI	CTAG	4 cut(s)	27, 342, 438, 531
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	2 cut(s)	158, 669
GsaI	CCCAGC	2 cut(s)	108, 349
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	1 cut(s)	575
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	6 cut(s)	20, 271, 293, 298, 412, 493
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HinfI	GANTC	1 cut(s)	701
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	2 cut(s)	79, 412
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	66, 510
Hpy188III	TCNNGA	3 cut(s)	56, 226, 268
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	223, 391
HpyCH4III	ACNGT	4 cut(s)	112, 313, 382, 629
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	2 cut(s)	185, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 196, 677
HpyF3I	CTNAG	1 cut(s)	509
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	6 cut(s)	20, 271, 293, 298, 412, 493
HspAI	GCGC	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	5 cut(s)	19, 84, 417, 631, 691
LmnI	GCTCC	2 cut(s)	389, 412
Lsp1109I	GCAGC	2 cut(s)	169, 655
MabI	ACCWGGT	1 cut(s)	241
MaeI	CTAG	4 cut(s)	27, 342, 438, 531
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	3 cut(s)	313, 324, 433
MalI	GATC	5 cut(s)	21, 86, 419, 633, 693
MboI	GATC	5 cut(s)	19, 84, 417, 631, 691
MboII	GAAGA	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	5 cut(s)	60, 179, 471, 615, 718
MlyI	GAGTC	1 cut(s)	710
MnlI	CCTC	7 cut(s)	23, 108, 113, 130, 207, 642, 715
MseI	TTAA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	243, 607
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	154, 196, 677
NciI	CCSGG	1 cut(s)	607
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	5 cut(s)	19, 84, 417, 631, 691
NlaIII	CATG	6 cut(s)	20, 271, 293, 298, 412, 493
NmuCI	GTSAC	2 cut(s)	313, 433
PagI	TCATGA	1 cut(s)	267
PflFI	GACNNNGTC	1 cut(s)	444
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	159, 670
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PshAI	GACNNNNGTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	241
PspFI	CCCAGC	2 cut(s)	104, 345
PspGI	CCWGG	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	317
PsyI	GACNNNGTC	1 cut(s)	444
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	2 cut(s)	158, 669
Sau3AI	GATC	5 cut(s)	19, 84, 417, 631, 691
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	2 cut(s)	243, 607
SduI	GDGCHC	1 cut(s)	394
SexAI	ACCWGGT	1 cut(s)	241
SinI	GGWCC	1 cut(s)	446
Sse9I	AATT	5 cut(s)	60, 179, 471, 615, 718
SspMI	CTAG	4 cut(s)	27, 342, 438, 531
StyD4I	CCNGG	2 cut(s)	241, 605
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	112, 313, 382, 629
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	1 cut(s)	420
TasI	AATT	5 cut(s)	60, 179, 471, 615, 718
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	3 cut(s)	322, 391, 634
TseFI	GTSAC	2 cut(s)	313, 433
TseI	GCWGC	2 cut(s)	157, 668
Tsp45I	GTSAC	2 cut(s)	313, 433
TspDTI	ATGAA	3 cut(s)	186, 284, 546
TspRI	CASTG	3 cut(s)	322, 391, 634
Tth111I	GACNNNGTC	1 cut(s)	444
Van91I	CCANNNNNTGG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	2 cut(s)	60, 471
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	4 cut(s)	27, 342, 438, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.