Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001870

Physical Location & Seq

Genomic Coordinates Forward (+)

18990915 .. 18994327

Gene Structure 3413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0214300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTTTATCTTGCTCCGATTAACTCCAGCAGCAGCAAGAACACCGGCTTTGAACGCCTCAGGATTGTCCCTTGCAACCATTGAACCTCTCAATGGTTGTAACTTTAAGAAGTGGAAGGAATCCATAGAGCTTTACCTTGGCCTTCAGGGAATTGATTGGTGTCTGACTGAACCCGAACCGCTAATAGATGACACTAGCTCTGACCTAGTGATTGTGAAACATAGAGAATGGGTTAGAGCCAACAGGATGACCAAGCTTATTCTTAAGCAAACCATGACTGCTGTGGTTAGGGGGAGTATTGCTGACAAAGACACAGCCACTGAGTTTATGGCTGCTATTGCTTTGAAGTTTCGAGAGAATGAGAAGGCAGAGATTTCTCTTCTGCTGGATATGTTGATGGGGATCAAGTATGATTCCTCTAAGAGTGTCCGTGAGCATATCATGAAGATCATAGACATCACCACTAGGCTTGGAGATCTTGAGATACCCCTGCCTGCTGAATTTATAGTGCATCAGTCCCTAAGAACCCTGCCTGCCTCTTTTGGTCAGTTGAAGACCACTTATTTTACACAGAAGGATAAGTGGGATTTGAATGAGCTAATAGCGATATGTGTGCAAGAGGAAGATAGGATCAAGAGGGATGGACCACTTGTTGTGAATCTGATCTCAAAGTCGAAATGGAAGGGAAAAGGCAAAGCTGTTGCCTCTAGTGCAGTTAATTCTGGAGAAGGTACCAGTGGGACCAAGCCTTACAAACTTGGCCCCAAGAAATCTGTAAACAGCAAGGGTAAGAAACCGGGAGTCTTCAAATGCTTCTTTTGTAAAAAGGAAGGTCATATGAAGAAAAATTGCCAGGGATTCAAGGATTGGATGGCAAAGAAGGGGCTTTCTAAGCAAGAGAGCTCCAAGGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019438 GO:0019752 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

305

Amino Acids

34.11

Weight (kDa)

9.5

Isoelectric Point (pI)

27.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	53 - 213	1e-13	gag-polypeptide of LTR copia-type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29690 AT2G29690
fragaria_vesca	FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350
malus_domestica	MD00G1120400.v1.1 MD03G1072500.v1.1 MD11G1077400.v1.1 MD11G1078000.v1.1 MD11G1078700.v1.1
prunus_persica	Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1
pyrus_communis	pycom03g05870 pycom11g06530 pycom11g06550 pycom11g06580
rosa_chinensis	RchiOBHm_Chr2g0157091 RchiOBHm_Chr4g0399261 RchiOBHm_Chr5g0068931
rosa_laevigata	RLG00000036024
rosa_multiflora	Rmu_sc0003000.1_g000002 Rmu_sc0006282.1_g000030 Rmu_sc0042660.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011770
rosa_rugosa	Rorug01G0059300 Rorug01G0059400 Rorug07G0214300
rosa_samantha	Rh2BG537500 Rh2DG546300 Rh5AG451600 Rh5BG470700 Rh5CG493100 Rh5DG483500 Rh7BG347700 Rh7BG347800 Rh7DG336200 Rh7DG336300
rosa_wichuraiana	Rw2G031030 Rw2G043250 Rw5G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	731
AccB1I	GGYRCC	1 cut(s)	731
AciI	CCGC	1 cut(s)	179
AclWI	GGATC	2 cut(s)	410, 638
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	733
AfiI	CCNNNNNNNGG	1 cut(s)	92
AflII	CTTAAG	1 cut(s)	263
AgsI	TTSAA	7 cut(s)	52, 83, 346, 553, 592, 808, 862
AjnI	CCWGG	1 cut(s)	852
AluBI	AGCT	6 cut(s)	130, 198, 256, 598, 698, 903
AluI	AGCT	6 cut(s)	130, 198, 256, 598, 698, 903
Alw21I	GWGCWC	1 cut(s)	905
AlwI	GGATC	2 cut(s)	410, 638
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	139, 760
ApeKI	GCWGC	3 cut(s)	29, 32, 332
ApoI	RAATTY	1 cut(s)	500
Asp718I	GGTACC	1 cut(s)	731
AspS9I	GGNCC	3 cut(s)	644, 741, 761
AsuC2I	CCSGG	1 cut(s)	798
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	2 cut(s)	644, 741
AxyI	CCTNAGG	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	731
BanII	GRGCYC	1 cut(s)	905
BbsI	GAAGAC	2 cut(s)	560, 796
Bbv12I	GWGCWC	1 cut(s)	905
BbvI	GCAGC	3 cut(s)	41, 44, 319
BccI	CCATC	3 cut(s)	391, 635, 865
BcgI	CGANNNNNNTGC	2 cut(s)	595, 629
BciT130I	CCWGG	1 cut(s)	854
BcnI	CCSGG	1 cut(s)	798
BfaI	CTAG	4 cut(s)	195, 206, 465, 708
BfrI	CTTAAG	1 cut(s)	263
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	3 cut(s)	30, 33, 333
BlsI	GCNGC	3 cut(s)	31, 34, 334
Bme1390I	CCNGG	2 cut(s)	798, 854
Bme18I	GGWCC	2 cut(s)	644, 741
BmgT120I	GGNCC	3 cut(s)	644, 741, 761
BmiI	GGNNCC	3 cut(s)	733, 742, 763
BmrFI	CCNGG	2 cut(s)	798, 854
BmsI	GCATC	1 cut(s)	520
BpiI	GAAGAC	2 cut(s)	560, 796
BpmI	CTGGAG	2 cut(s)	9, 744
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	136, 853, 906
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	735
Bse21I	CCTNAGG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	854
BseDI	CCNNGG	3 cut(s)	136, 853, 906
BseGI	GGATG	3 cut(s)	252, 646, 876
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	2 cut(s)	72, 312
BseNI	ACTGG	1 cut(s)	735
BseXI	GCAGC	3 cut(s)	41, 44, 319
BsgI	GTGCAG	1 cut(s)	732
BshFI	GGCC	2 cut(s)	141, 762
BshNI	GGYRCC	1 cut(s)	731
BsiHKAI	GWGCWC	1 cut(s)	905
BsiSI	CCGG	2 cut(s)	44, 797
BslFI	GGGAC	3 cut(s)	52, 502, 754
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmFI	GGGAC	3 cut(s)	52, 502, 754
BsnI	GGCC	2 cut(s)	141, 762
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp143I	GATC	5 cut(s)	402, 447, 475, 630, 663
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	2 cut(s)	141, 762
BspCNI	CTCAG	2 cut(s)	71, 313
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	3 cut(s)	733, 742, 763
BspPI	GGATC	2 cut(s)	410, 638
BspT107I	GGYRCC	1 cut(s)	731
BspTI	CTTAAG	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	735
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	136, 853, 906
BssMI	GATC	5 cut(s)	402, 447, 475, 630, 663
BssT1I	CCWWGG	2 cut(s)	136, 906
Bst2UI	CCWGG	1 cut(s)	854
Bst6I	CTCTTC	1 cut(s)	384
BstAFI	CTTAAG	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	495, 534
BstDEI	CTNAG	5 cut(s)	58, 321, 420, 521, 891
BstF5I	GGATG	3 cut(s)	252, 646, 876
BstKTI	GATC	5 cut(s)	405, 450, 478, 633, 666
BstMBI	GATC	5 cut(s)	402, 447, 475, 630, 663
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 338, 710, 892
BstNI	CCWGG	1 cut(s)	854
BstSCI	CCNGG	2 cut(s)	796, 852
BstV1I	GCAGC	3 cut(s)	41, 44, 319
BstV2I	GAAGAC	2 cut(s)	560, 796
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
Bsu36I	CCTNAGG	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	141, 762
BtsCI	GGATG	3 cut(s)	252, 646, 876
BtsIMutI	CAGTG	2 cut(s)	318, 742
Cac8I	GCNNGC	2 cut(s)	495, 534
CaiI	CAGNNNCTG	1 cut(s)	320
CciI	TCATGA	1 cut(s)	441
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	644, 741, 761
Csp6I	GTAC	1 cut(s)	732
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	2 cut(s)	274, 442
CviQI	GTAC	1 cut(s)	732
DdeI	CTNAG	5 cut(s)	58, 321, 420, 521, 891
DpnI	GATC	5 cut(s)	404, 449, 477, 632, 665
DpnII	GATC	5 cut(s)	402, 447, 475, 630, 663
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Ecl136II	GAGCTC	1 cut(s)	903
Eco130I	CCWWGG	2 cut(s)	136, 906
Eco24I	GRGCYC	1 cut(s)	905
Eco47I	GGWCC	2 cut(s)	644, 741
Eco53kI	GAGCTC	1 cut(s)	903
Eco57I	CTGAAG	1 cut(s)	128
Eco81I	CCTNAGG	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	903
EcoRII	CCWGG	1 cut(s)	852
EcoT14I	CCWWGG	2 cut(s)	136, 906
EcoT38I	GRGCYC	1 cut(s)	905
ErhI	CCWWGG	2 cut(s)	136, 906
FaeI	CATG	2 cut(s)	277, 445
FaqI	GGGAC	3 cut(s)	52, 502, 754
FatI	CATG	2 cut(s)	273, 441
FauNDI	CATATG	1 cut(s)	837
Fnu4HI	GCNGC	3 cut(s)	30, 33, 333
FokI	GGATG	3 cut(s)	259, 653, 883
FriOI	GRGCYC	1 cut(s)	905
Fsp4HI	GCNGC	3 cut(s)	30, 33, 333
FspBI	CTAG	4 cut(s)	195, 206, 465, 708
GluI	GCNGC	3 cut(s)	30, 33, 333
GsuI	CTGGAG	2 cut(s)	9, 744
HaeIII	GGCC	2 cut(s)	141, 762
HapII	CCGG	2 cut(s)	44, 797
Hin1II	CATG	2 cut(s)	277, 445
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	5 cut(s)	119, 413, 658, 801, 858
HpaII	CCGG	2 cut(s)	44, 797
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	4 cut(s)	17, 165, 202, 663
Hpy188III	TCNNGA	6 cut(s)	60, 353, 442, 479, 634, 723
Hpy8I	GTNNAC	1 cut(s)	778
HpyAV	CCTTC	8 cut(s)	109, 152, 358, 568, 676, 722, 824, 874
HpyCH4V	TGCA	4 cut(s)	74, 511, 616, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 338, 710, 892
HpyF3I	CTNAG	5 cut(s)	58, 321, 420, 521, 891
Hsp92II	CATG	2 cut(s)	277, 445
KpnI	GGTACC	1 cut(s)	735
Kzo9I	GATC	5 cut(s)	402, 447, 475, 630, 663
LmnI	GCTCC	2 cut(s)	18, 908
Lsp1109I	GCAGC	3 cut(s)	41, 44, 319
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	4 cut(s)	195, 206, 465, 708
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	5 cut(s)	404, 449, 477, 632, 665
MboI	GATC	5 cut(s)	402, 447, 475, 630, 663
MboII	GAAGA	6 cut(s)	371, 457, 565, 635, 796, 853
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	905
MluCI	AATT	4 cut(s)	150, 500, 718, 847
MlyI	GAGTC	1 cut(s)	810
MnlI	CCTC	7 cut(s)	67, 96, 427, 547, 613, 630, 715
MseI	TTAA	4 cut(s)	20, 105, 264, 717
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	2 cut(s)	44, 797
MspR9I	CCNGG	2 cut(s)	798, 854
MvaI	CCWGG	1 cut(s)	854
MwoI	GCNNNNNNNGC	4 cut(s)	53, 338, 710, 892
NciI	CCSGG	1 cut(s)	798
NdeI	CATATG	1 cut(s)	837
NdeII	GATC	5 cut(s)	402, 447, 475, 630, 663
NlaIII	CATG	2 cut(s)	277, 445
NlaIV	GGNNCC	3 cut(s)	733, 742, 763
PagI	TCATGA	1 cut(s)	441
PfeI	GAWTC	4 cut(s)	119, 413, 658, 858
PkrI	GCNGC	3 cut(s)	31, 34, 334
PleI	GAGTC	1 cut(s)	809
PpsI	GAGTC	1 cut(s)	809
Psp124BI	GAGCTC	1 cut(s)	905
Psp6I	CCWGG	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	852
PspN4I	GGNNCC	3 cut(s)	733, 742, 763
PspPI	GGNCC	3 cut(s)	644, 741, 761
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	1 cut(s)	733
RsaNI	GTAC	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	905
SaqAI	TTAA	4 cut(s)	20, 105, 264, 717
SatI	GCNGC	3 cut(s)	30, 33, 333
Sau3AI	GATC	5 cut(s)	402, 447, 475, 630, 663
Sau96I	GGNCC	3 cut(s)	644, 741, 761
SchI	GAGTC	1 cut(s)	810
ScrFI	CCNGG	2 cut(s)	798, 854
SduI	GDGCHC	1 cut(s)	905
SfaNI	GCATC	1 cut(s)	520
SinI	GGWCC	2 cut(s)	644, 741
SmlI	CTYRAG	2 cut(s)	263, 479
SmoI	CTYRAG	2 cut(s)	263, 479
Sse9I	AATT	4 cut(s)	150, 500, 718, 847
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	4 cut(s)	195, 206, 465, 708
SstI	GAGCTC	1 cut(s)	905
StyD4I	CCNGG	2 cut(s)	796, 852
StyI	CCWWGG	2 cut(s)	136, 906
TaqI	TCGA	2 cut(s)	352, 674
TasI	AATT	4 cut(s)	150, 500, 718, 847
TfiI	GAWTC	4 cut(s)	119, 413, 658, 858
Tru1I	TTAA	4 cut(s)	20, 105, 264, 717
Tru9I	TTAA	4 cut(s)	20, 105, 264, 717
TscAI	CASTG	2 cut(s)	325, 742
TseI	GCWGC	3 cut(s)	29, 32, 332
TspDTI	ATGAA	2 cut(s)	458, 854
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	2 cut(s)	325, 742
Vha464I	CTTAAG	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	644, 741
XapI	RAATTY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	2 cut(s)	280, 325
XspI	CTAG	4 cut(s)	195, 206, 465, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.