Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001870

Physical Location & Seq

Genomic Coordinates Reverse (-)

9729205 .. 9730189

Gene Structure 985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0059400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGTTACTGTCAAAGATGCTGTGGGGTCTTTTGTTGCTTGGCCGAGGGATCTTATAGTTCAATCCCCTCCCGATGTTAAGAAGAAACAACCTATGAAGGCTGGTAAGGGTTTGAAGAAGAGGAAAAGGGTAGTAGCCGTTGATGAAGAGGAGTTATTTATCGACTTCAAGAAGCTGCCGAAAGATTACCCTACAGCGTGCAAGTGCTTGTGGTTGTGGGCGAAAGACAATTTGGCAAATGGGAAGACAATCTCCTTTCAGATGGAAGACAAAGTTTTTGGCATCAACAAAAAGCAATATGTGTTTAAGGCAGATATTCATGCCTTGTGTACCATGGGTGAATTGTCGGGTGGAGTGATCTGCATCTACTTGCATGAAGTCTTGAAGAGAGCAAAGATGTCAGAGATGGTTGGCTTTGTGGACCCTTCACAGCTTGGCGCACTTGGATGTGGAAATCCAACAGAAAGATCACGCCATCTAGCAAATAGGTTCCAAAATGCAAAGAAAGGGCAGATTTTTATGTTGCCATATAATGCAGGCAAGCACTGGATGTTGACTGTTGTCAATCCGGATGAAGAAACAATCTACTTCATGGATCCTTTGAGGCGTCGACTAATAGGTGACGAATGGGAGACGGCTGTGGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019438 GO:0019752 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

216

Amino Acids

24.59

Weight (kDa)

9.27

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29690 AT2G29690
fragaria_vesca	FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350 FvH4_3g38350
malus_domestica	MD00G1120400.v1.1 MD03G1072500.v1.1 MD11G1077400.v1.1 MD11G1078000.v1.1 MD11G1078700.v1.1
prunus_persica	Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1 Prupe.6G059400_v2.0.a1
pyrus_communis	pycom03g05870 pycom11g06530 pycom11g06550 pycom11g06580
rosa_chinensis	RchiOBHm_Chr2g0157091 RchiOBHm_Chr4g0399261 RchiOBHm_Chr5g0068931
rosa_laevigata	RLG00000036024
rosa_multiflora	Rmu_sc0003000.1_g000002 Rmu_sc0006282.1_g000030 Rmu_sc0042660.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011770
rosa_rugosa	Rorug01G0059300 Rorug01G0059400 Rorug07G0214300
rosa_samantha	Rh2BG537500 Rh2DG546300 Rh5AG451600 Rh5BG470700 Rh5CG493100 Rh5DG483500 Rh7BG347700 Rh7BG347800 Rh7DG336200 Rh7DG336300
rosa_wichuraiana	Rw2G031030 Rw2G043250 Rw5G042200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	610
AccIII	TCCGGA	1 cut(s)	568
AclWI	GGATC	3 cut(s)	57, 590, 603
AcoI	YGGCCR	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	607
AfaI	GTAC	1 cut(s)	331
AgsI	TTSAA	4 cut(s)	62, 115, 169, 385
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	2 cut(s)	175, 433
AluI	AGCT	2 cut(s)	175, 433
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	3 cut(s)	57, 590, 603
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	175
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	350, 632
AvaII	GGWCC	1 cut(s)	421
BamHI	GGATCC	1 cut(s)	595
BbsI	GAAGAC	2 cut(s)	251, 273
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	3 cut(s)	256, 400, 483
BceAI	ACGGC	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	3 cut(s)	423, 491, 597
BmsI	GCATC	3 cut(s)	7, 291, 372
BoxI	GACNNNNGTC	1 cut(s)	560
BpiI	GAAGAC	2 cut(s)	251, 273
BsaBI	GATNNNNATC	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	607
BsaJI	CCNNGG	2 cut(s)	44, 333
BsaWI	WCCGGW	1 cut(s)	568
Bse1I	ACTGG	1 cut(s)	551
Bse8I	GATNNNNATC	1 cut(s)	362
BseAI	TCCGGA	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	44, 333
BseGI	GGATG	3 cut(s)	452, 555, 577
BseJI	GATNNNNATC	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	551
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	162
BshFI	GGCC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	569
BsmAI	GTCTC	1 cut(s)	626
BsmBI	CGTCTC	1 cut(s)	626
BsnI	GGCC	1 cut(s)	43
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	4 cut(s)	49, 357, 467, 595
Bsp19I	CCATGG	1 cut(s)	333
BspANI	GGCC	1 cut(s)	43
BspEI	TCCGGA	1 cut(s)	568
BspLI	GGNNCC	3 cut(s)	423, 491, 597
BspPI	GGATC	3 cut(s)	57, 590, 603
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	2 cut(s)	44, 333
BssMI	GATC	4 cut(s)	49, 357, 467, 595
BssNI	GRCGYC	1 cut(s)	607
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	10, 559
Bst6I	CTCTTC	3 cut(s)	113, 141, 380
BstACI	GRCGYC	1 cut(s)	607
BstC8I	GCNNGC	3 cut(s)	199, 538, 542
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	3 cut(s)	452, 555, 577
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	4 cut(s)	52, 360, 470, 598
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	4 cut(s)	49, 357, 467, 595
BstPAI	GACNNNNGTC	1 cut(s)	560
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	2 cut(s)	251, 273
BstX2I	RGATCY	2 cut(s)	49, 595
BstYI	RGATCY	2 cut(s)	49, 595
BsuRI	GGCC	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	452, 555, 577
BtsIMutI	CAGTG	1 cut(s)	544
Cac8I	GCNNGC	3 cut(s)	199, 538, 542
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	421
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	4 cut(s)	320, 334, 374, 592
CviJI	RGCY	7 cut(s)	43, 101, 137, 175, 414, 433, 638
CviKI_1	RGCY	7 cut(s)	43, 101, 137, 175, 414, 433, 638
CviQI	GTAC	1 cut(s)	330
DpnI	GATC	4 cut(s)	51, 359, 469, 597
DpnII	GATC	4 cut(s)	49, 357, 467, 595
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	3 cut(s)	113, 141, 380
EarI	CTCTTC	3 cut(s)	113, 141, 380
Eco130I	CCWWGG	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	626
FaeI	CATG	4 cut(s)	323, 337, 377, 595
FatI	CATG	4 cut(s)	319, 333, 373, 591
FblI	GTMKAC	1 cut(s)	610
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	3 cut(s)	459, 562, 584
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	569
HgaI	GACGC	1 cut(s)	596
HhaI	GCGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	607
Hin1II	CATG	4 cut(s)	323, 337, 377, 595
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HincII	GTYRAC	2 cut(s)	555, 611
HindII	GTYRAC	2 cut(s)	555, 611
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	2 cut(s)	350, 632
Hpy166II	GTNNAC	4 cut(s)	330, 421, 555, 611
Hpy188I	TCNGA	2 cut(s)	261, 403
Hpy188III	TCNNGA	4 cut(s)	71, 169, 382, 569
Hpy8I	GTNNAC	4 cut(s)	330, 421, 555, 611
Hpy99I	CGWCG	1 cut(s)	612
HpyAV	CCTTC	2 cut(s)	91, 435
HpyCH4III	ACNGT	2 cut(s)	10, 559
HpyCH4V	TGCA	5 cut(s)	201, 363, 373, 500, 536
Hsp92I	GRCGYC	1 cut(s)	607
Hsp92II	CATG	4 cut(s)	323, 337, 377, 595
HspAI	GCGC	1 cut(s)	438
Kpn2I	TCCGGA	1 cut(s)	568
Kzo9I	GATC	4 cut(s)	49, 357, 467, 595
LpnPI	CCDG	4 cut(s)	87, 522, 532, 582
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	3 cut(s)	7, 291, 372
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	2 cut(s)	4, 620
MalI	GATC	4 cut(s)	51, 359, 469, 597
MboI	GATC	4 cut(s)	49, 357, 467, 595
MboII	GAAGA	8 cut(s)	94, 127, 130, 158, 256, 278, 397, 587
MflI	RGATCY	2 cut(s)	49, 595
MluCI	AATT	2 cut(s)	229, 341
MmeI	TCCRAC	1 cut(s)	482
MnlI	CCTC	5 cut(s)	39, 78, 114, 142, 597
MroI	TCCGGA	1 cut(s)	568
MseI	TTAA	2 cut(s)	78, 306
MslI	CAYNNNNRTG	1 cut(s)	445
MspI	CCGG	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	4 cut(s)	49, 357, 467, 595
NlaIII	CATG	4 cut(s)	323, 337, 377, 595
NlaIV	GGNNCC	3 cut(s)	423, 491, 597
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	620
PkrI	GCNGC	1 cut(s)	177
PshAI	GACNNNNGTC	1 cut(s)	560
PspN4I	GGNNCC	3 cut(s)	423, 491, 597
PspPI	GGNCC	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	49, 595
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	445
SalI	GTCGAC	1 cut(s)	609
SaqAI	TTAA	2 cut(s)	78, 306
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	4 cut(s)	49, 357, 467, 595
Sau96I	GGNCC	1 cut(s)	421
SetI	ASST	5 cut(s)	94, 177, 435, 491, 622
SfaNI	GCATC	3 cut(s)	7, 291, 372
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	445
Sse9I	AATT	2 cut(s)	229, 341
SspMI	CTAG	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	10, 559
TaqI	TCGA	2 cut(s)	162, 610
TasI	AATT	2 cut(s)	229, 341
Tru1I	TTAA	2 cut(s)	78, 306
Tru9I	TTAA	2 cut(s)	78, 306
TscAI	CASTG	1 cut(s)	551
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	6 cut(s)	110, 159, 308, 390, 580, 588
TspRI	CASTG	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	610
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.