Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004601

Physical Location & Seq

Genomic Coordinates Forward (+)

2489404 .. 2489703

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1035400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGATGAGATCAATGTCCTACTACAACGTTGGAATATTGTGCGTTGTAGTTTTTGTTGTTGTGGTCGGGGGAACCCAGGTGGGTGAGGCAGCGGTGACTTGTAACCCAATGGAGCTAGCCCCGTGCTCCGCTGCAATCATGTCCTCGAACTCTCCCACCCCCGTGTGTTGCAAAAAACTCAAGGAGCAGAGCCCTTGCCTCTGCCAGTATGTGAAGAACCCCAACCTCCAGAGGCTTGTCAACTCCCCAAACGCCAAGAAGGTCGCCGACACTTGCGGTTCTCCATTCCCCACATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

100

Amino Acids

10.52

Weight (kDa)

8.62

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73780
malus_domestica	MD06G1219800.v1.1 MD13G1035400.v1.1 MD14G1229500.v1.1 MD15G1204900.v1.1 MD16G1037400.v1.1
prunus_persica	Prupe.1G316400_v2.0.a1 Prupe.5G224300_v2.0.a1
pyrus_communis	pycom06g19630 pycom13g03110 pycom14g19090 pycom16g03260
rosa_chinensis	RchiOBHm_Chr7g0179461 RchiOBHm_Chr7g0179471
rosa_laevigata	RLG00000005353 RLG00000005354
rosa_multiflora	Rmu_sc0000735.1_g000021 Rmu_sc0000735.1_g000023
rosa_roxburghii	Rroxscaffold_3G00273980 Rroxscaffold_3G00273990
rosa_rugosa	Rorug06G0424700
rosa_samantha	Rh7AG024000 Rh7AG024300 Rh7BG023600 Rh7BG023700 Rh7CG025000 Rh7CG025100 Rh7DG024500 Rh7DG024600
rosa_wichuraiana	Rw7G001950 Rw7G001960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	92, 129, 276
AclI	AACGTT	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	75
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw21I	GWGCWC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	89, 131
AsuHPI	GGTGA	2 cut(s)	95, 106
AsuNHI	GCTAGC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	101, 118
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	2 cut(s)	90, 132
BlsI	GCNGC	2 cut(s)	91, 133
Bme1390I	CCNGG	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	77
BmtI	GCTAGC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	101, 118
BsiHKAI	GWGCWC	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	128, 194
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	3 cut(s)	92, 129, 276
BspLI	GGNNCC	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	101, 118
Cac8I	GCNNGC	1 cut(s)	117
CviAII	CATG	2 cut(s)	139, 294
CviJI	RGCY	4 cut(s)	115, 119, 192, 235
CviKI_1	RGCY	4 cut(s)	115, 119, 192, 235
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	2 cut(s)	142, 297
FaiI	YATR	3 cut(s)	140, 210, 295
FatI	CATG	2 cut(s)	138, 293
Fnu4HI	GCNGC	2 cut(s)	90, 132
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	90, 132
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	2 cut(s)	90, 132
GsuI	CTGGAG	1 cut(s)	212
Hin1II	CATG	2 cut(s)	142, 297
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HphI	GGTGA	2 cut(s)	95, 106
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	134, 171
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	142, 297
Kzo9I	GATC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	112, 131, 184
LpnPI	CCDG	4 cut(s)	62, 89, 218, 242
Lsp1109I	GCAGC	2 cut(s)	101, 118
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	94, 101
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	1 cut(s)	226
MhlI	GDGCHC	2 cut(s)	128, 194
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	5 cut(s)	79, 154, 209, 225, 236
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	2 cut(s)	92, 131
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	8
NheI	GCTAGC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	142, 297
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	297
OliI	CACNNNNGTG	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	91, 133
Psp1406I	AACGTT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	161
SatI	GCNGC	2 cut(s)	90, 132
Sau3AI	GATC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	128, 194
SetI	ASST	5 cut(s)	30, 81, 117, 228, 264
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SsiI	CCGC	3 cut(s)	92, 129, 276
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	2 cut(s)	89, 131
Tsp45I	GTSAC	1 cut(s)	94
XceI	RCATGY	1 cut(s)	297
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.