Rorug06G0424700

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004601
Physical Location & Seq
Reverse (-)
56257496 .. 56258816
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0424700.1

Sequence Viewer

Length: 411 bp
ATGGCTCGTACGAAGCAGACTGCTCGCAAATCCACCGGCGGCAAAGCTCCGAGGAAGCAACTCGCCACCAAGGCTGCTCGGAAGTCAGCTCCGACCACCGGTGGAGTCAAGAAGCCCCATCGCTACCGCCCCGGAACCGTCGCCCTCCGTGAAATCCGAAAGTACCAGAAGAGCACTGAGCTTTTGATCCGCAAGCTACCTTTCCAGCGCCTCGTTCGTGAAATCGCCCAGGATTTCAAGACGGACCTCAGGTTTCAGAGCCATGCTGTTCTTGCTCTTCAGGAAGCTGCTGAGGCTTACTTGGTGGGTCTGTTTGAGGACACCAACCTGTGCGCTATTCATGCCAAGAGGGTCACCATTATGCCCAAGGACATTCAACTAGCTCGGAGGATTCGCGGCGAACGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

136

Amino Acids

15.41

Weight (kDa)

11.15

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 1e-38 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 396
AciI CCGC 4 cut(s) 39, 127, 190, 396
AclWI GGATC 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 2 cut(s) 10, 164
AfiI CCNNNNNNNGG 1 cut(s) 98
AgeI ACCGGT 1 cut(s) 98
AgsI TTSAA 2 cut(s) 238, 377
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 6 cut(s) 47, 89, 181, 196, 287, 383
AluI AGCT 6 cut(s) 47, 89, 181, 196, 287, 383
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 1 cut(s) 181
ApeKI GCWGC 2 cut(s) 74, 287
AsiGI ACCGGT 1 cut(s) 98
AspLEI GCGC 2 cut(s) 210, 335
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 346
AvaII GGWCC 1 cut(s) 244
AxyI CCTNAGG 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 176
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 61, 274
BccI CCATC 1 cut(s) 126
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 1 cut(s) 230
BcnI CCSGG 1 cut(s) 132
BfaI CTAG 1 cut(s) 380
BfoI RGCGCY 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 4 cut(s) 40, 75, 288, 397
BlsI GCNGC 4 cut(s) 41, 76, 289, 398
Bme1390I CCNGG 2 cut(s) 132, 230
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 132, 230
Bpu10I CCTNAGC 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 132
BsaJI CCNNGG 5 cut(s) 50, 69, 130, 228, 366
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse118I RCCGGY 2 cut(s) 35, 98
Bse21I CCTNAGG 1 cut(s) 248
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 5 cut(s) 50, 69, 130, 228, 366
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 3 cut(s) 168, 262, 282
BseXI GCAGC 2 cut(s) 61, 274
Bsh1236I CGCG 1 cut(s) 396
BshTI ACCGGT 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 3 cut(s) 36, 99, 132
BsiWI CGTACG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 4 cut(s) 39, 127, 190, 396
BspCNI CTCAG 3 cut(s) 169, 261, 283
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 2 cut(s) 164, 282
BsrFI RCCGGY 2 cut(s) 35, 98
BssAI RCCGGY 2 cut(s) 35, 98
BssECI CCNNGG 5 cut(s) 50, 69, 130, 228, 366
BssMI GATC 1 cut(s) 186
BssT1I CCWWGG 2 cut(s) 69, 366
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 164, 282
BstC8I GCNNGC 2 cut(s) 25, 194
BstDEI CTNAG 3 cut(s) 177, 248, 291
BstEII GGTNACC 1 cut(s) 352
BstFNI CGCG 1 cut(s) 396
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 2 cut(s) 210, 335
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
BstNI CCWGG 1 cut(s) 230
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 130, 228
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 2 cut(s) 61, 274
Bsu36I CCTNAGG 1 cut(s) 248
BtgZI GCGATG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 25, 194
CfoI GCGC 2 cut(s) 210, 335
Cfr10I RCCGGY 2 cut(s) 35, 98
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 2 cut(s) 9, 163
CspAI ACCGGT 1 cut(s) 98
CviAII CATG 2 cut(s) 263, 341
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 3 cut(s) 177, 248, 291
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 164, 282
EarI CTCTTC 2 cut(s) 164, 282
Eco130I CCWWGG 2 cut(s) 69, 366
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 248
Eco91I GGTNACC 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 2 cut(s) 69, 366
ErhI CCWWGG 2 cut(s) 69, 366
FaeI CATG 2 cut(s) 266, 344
FaiI YATR 3 cut(s) 264, 342, 362
FatI CATG 2 cut(s) 262, 340
Fnu4HI GCNGC 4 cut(s) 40, 75, 288, 397
Fsp4HI GCNGC 4 cut(s) 40, 75, 288, 397
FspBI CTAG 1 cut(s) 380
GlaI GCGC 2 cut(s) 209, 334
GluI GCNGC 4 cut(s) 40, 75, 288, 397
HaeII RGCGCY 1 cut(s) 211
HapII CCGG 3 cut(s) 36, 99, 132
HhaI GCGC 2 cut(s) 210, 335
Hin1II CATG 2 cut(s) 266, 344
Hin6I GCGC 2 cut(s) 208, 333
HinP1I GCGC 2 cut(s) 208, 333
HinfI GANTC 2 cut(s) 105, 391
HpaII CCGG 3 cut(s) 36, 99, 132
HphI GGTGA 1 cut(s) 346
Hpy188I TCNGA 6 cut(s) 51, 81, 93, 158, 258, 387
Hpy188III TCNNGA 4 cut(s) 109, 218, 238, 281
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 403
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
HpyF3I CTNAG 3 cut(s) 177, 248, 291
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 2 cut(s) 266, 344
HspAI GCGC 2 cut(s) 208, 333
Kzo9I GATC 1 cut(s) 186
LguI GCTCTTC 2 cut(s) 164, 282
LmnI GCTCC 2 cut(s) 52, 94
Lsp1109I GCAGC 2 cut(s) 61, 274
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 2 cut(s) 181, 269
MhlI GDGCHC 1 cut(s) 176
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 8 cut(s) 45, 155, 221, 257, 286, 310, 342, 381
MseI TTAA 1 cut(s) 409
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 3 cut(s) 36, 99, 132
MspR9I CCNGG 2 cut(s) 132, 230
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
NciI CCSGG 1 cut(s) 132
NdeII GATC 1 cut(s) 186
NlaIII CATG 2 cut(s) 266, 344
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 352
PciSI GCTCTTC 2 cut(s) 164, 282
PcsI WCGNNNNNNNCGW 1 cut(s) 400
PfeI GAWTC 1 cut(s) 391
Pfl23II CGTACG 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 98
PkrI GCNGC 4 cut(s) 41, 76, 289, 398
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 228
PspEI GGTNACC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 228
PspLI CGTACG 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 244
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
RseI CAYNNNNRTG 1 cut(s) 359
SapI GCTCTTC 2 cut(s) 164, 282
SaqAI TTAA 1 cut(s) 409
SatI GCNGC 4 cut(s) 40, 75, 288, 397
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 132, 230
SduI GDGCHC 1 cut(s) 176
SgrAI CRCCGGYG 2 cut(s) 35, 98
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 359
SsiI CCGC 4 cut(s) 39, 127, 190, 396
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 130, 228
StyI CCWWGG 2 cut(s) 69, 366
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 406
TauI GCSGC 2 cut(s) 42, 399
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 74, 287
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 2 cut(s) 137, 257
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 244
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.