Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000735.1

Orthogroup ID

OG0004601

Physical Location & Seq

Genomic Coordinates Reverse (-)

109282 .. 109572

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000735.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgaaggcatcatatgtcgcaattgcattgtgcactgtggttgtggtgatgctggccacagcagaggtgtccatggcagctgtgacttgcagcccagtagagctgagctcctgtgcaagtgcaataagctctaatactccaccatcaaatctatgctgcaccaaaatcaaggagcagaagccttgtctctgccagtacctcaacaaccccaacctcaagaaattcgttaacaccccgaatgctcggagagttgctaggacttgtggcactcccttccccaggtgcagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

96

Amino Acids

10.21

Weight (kDa)

9.11

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73780
malus_domestica	MD06G1219800.v1.1 MD13G1035400.v1.1 MD14G1229500.v1.1 MD15G1204900.v1.1 MD16G1037400.v1.1
prunus_persica	Prupe.1G316400_v2.0.a1 Prupe.5G224300_v2.0.a1
pyrus_communis	pycom06g19630 pycom13g03110 pycom14g19090 pycom16g03260
rosa_chinensis	RchiOBHm_Chr7g0179461 RchiOBHm_Chr7g0179471
rosa_laevigata	RLG00000005353 RLG00000005354
rosa_multiflora	Rmu_sc0000735.1_g000021 Rmu_sc0000735.1_g000023
rosa_roxburghii	Rroxscaffold_3G00273980 Rroxscaffold_3G00273990
rosa_rugosa	Rorug06G0424700
rosa_samantha	Rh7AG024000 Rh7AG024300 Rh7BG023600 Rh7BG023700 Rh7CG025000 Rh7CG025100 Rh7DG024500 Rh7DG024600
rosa_wichuraiana	Rw7G001950 Rw7G001960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	221
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	5 cut(s)	80, 103, 108, 129, 288
AluI	AGCT	5 cut(s)	80, 103, 108, 129, 288
Alw21I	GWGCWC	2 cut(s)	35, 110
Alw26I	GTCTC	1 cut(s)	191
Alw44I	GTGCAC	1 cut(s)	31
AoxI	GGCC	1 cut(s)	54
ApaLI	GTGCAC	1 cut(s)	31
ApeKI	GCWGC	4 cut(s)	77, 90, 156, 285
ApoI	RAATTY	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	35, 110
BbvI	GCAGC	3 cut(s)	89, 102, 143
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	255, 289
BisI	GCNGC	4 cut(s)	78, 91, 157, 286
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	4 cut(s)	79, 92, 158, 287
Bme1390I	CCNGG	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	280
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	17, 39
BmuI	ACTGGG	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
Bpu1102I	GCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	72, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	95, 193
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	72, 278
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	95, 193
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	3 cut(s)	89, 102, 143
BsgI	GTGCAG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	35, 110
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	35, 110
Bsp1720I	GCTNAGC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	72
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	95, 193
BssECI	CCNNGG	2 cut(s)	72, 278
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	72
BstENI	CCTNNNNNAGG	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	89, 102, 143
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	8 cut(s)	56, 80, 93, 103, 108, 129, 181, 288
CviKI_1	RGCY	8 cut(s)	56, 80, 93, 103, 108, 129, 181, 288
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	76
FaiI	YATR	4 cut(s)	13, 15, 74, 154
FatI	CATG	1 cut(s)	72
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	4 cut(s)	78, 91, 157, 286
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	4 cut(s)	78, 91, 157, 286
FspBI	CTAG	2 cut(s)	255, 289
GluI	GCNGC	4 cut(s)	78, 91, 157, 286
HaeIII	GGCC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HpaI	GTTAAC	1 cut(s)	229
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	33, 229
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	2 cut(s)	33, 229
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	7 cut(s)	26, 33, 90, 116, 122, 159, 285
HpyF3I	CTNAG	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	76
KspAI	GTTAAC	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	113, 172
LpnPI	CCDG	5 cut(s)	38, 108, 124, 206, 265
Lsp1109I	GCAGC	3 cut(s)	89, 102, 143
LweI	GCATC	2 cut(s)	17, 39
MaeI	CTAG	2 cut(s)	255, 289
MaeIII	GTNAC	1 cut(s)	82
MfeI	CAATTG	1 cut(s)	21
MhlI	GDGCHC	2 cut(s)	35, 110
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	2 cut(s)	21, 221
MluNI	TGGCCA	1 cut(s)	56
MnlI	CCTC	3 cut(s)	58, 209, 224
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	280
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	72
NdeI	CATATG	1 cut(s)	13
NlaIII	CATG	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	79, 92, 158, 287
Psp124BI	GAGCTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	4 cut(s)	78, 91, 157, 286
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	2 cut(s)	35, 110
SetI	ASST	9 cut(s)	69, 82, 105, 110, 131, 201, 216, 284, 290
SfaNI	GCATC	2 cut(s)	17, 39
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	21, 221
SspMI	CTAG	2 cut(s)	255, 289
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	2 cut(s)	21, 221
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	4 cut(s)	77, 90, 156, 285
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	31
XagI	CCTNNNNNAGG	1 cut(s)	277
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	2 cut(s)	255, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.