pycom13g03110

Non-specific lipid-transfer protein 2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
2103743 .. 2104027
285 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03110.1

Sequence Viewer

Length: 285 bp
ATGATGAGATCAATGTCCTACTACAACCTTGGAATATTGTGTGTTGTAGTCGGGGGAACCCAGGTGGGTGAGGCAGCGGTGACTTGTAACCCAATGGAGCTAGCCCCGTGCGCCGCTGCAATCATGTCCTCGAACTCTCCCACCGCCGTGTGTTGCAAAAAACTCAAGGAGCAGAGCCCTTGCCTCTGCCAGTTTGTGAAGAACTCCAACCTCCAGAGGCTTGTCAACTCCCCAAACGCCAAGAAGGTCGCCGACGCTTGTGGTTCTCCATTCTCCACATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

95

Amino Acids

9.88

Weight (kDa)

8.63

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 77, 114, 144
AjnI CCWGG 1 cut(s) 60
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
ApeKI GCWGC 2 cut(s) 74, 116
AspLEI GCGC 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 80, 91
AsuNHI GCTAGC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 86, 103
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 62
BfaI CTAG 1 cut(s) 101
BisI GCNGC 3 cut(s) 75, 114, 117
BlsI GCNGC 3 cut(s) 76, 115, 118
Bme1390I CCNGG 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 62
BmtI GCTAGC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 28, 60
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 2 cut(s) 28, 60
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 2 cut(s) 86, 103
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 3 cut(s) 77, 114, 144
BspLI GGNNCC 1 cut(s) 58
BspOI GCTAGC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 28, 60
BssMI GATC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 102
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 86, 103
Cac8I GCNNGC 1 cut(s) 102
CfoI GCGC 1 cut(s) 113
CseI GACGC 1 cut(s) 263
CviAII CATG 2 cut(s) 124, 279
CviJI RGCY 4 cut(s) 100, 104, 177, 220
CviKI_1 RGCY 4 cut(s) 100, 104, 177, 220
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 2 cut(s) 127, 282
FaiI YATR 2 cut(s) 125, 280
FatI CATG 2 cut(s) 123, 278
Fnu4HI GCNGC 3 cut(s) 75, 114, 117
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 75, 114, 117
FspBI CTAG 1 cut(s) 101
GlaI GCGC 1 cut(s) 112
GluI GCNGC 3 cut(s) 75, 114, 117
GsuI CTGGAG 1 cut(s) 197
HgaI GACGC 1 cut(s) 263
HhaI GCGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 127, 282
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HphI GGTGA 2 cut(s) 80, 91
Hpy166II GTNNAC 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 119, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
Hsp92II CATG 2 cut(s) 127, 282
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 1 cut(s) 8
LmnI GCTCC 2 cut(s) 97, 169
LpnPI CCDG 4 cut(s) 47, 74, 203, 227
Lsp1109I GCAGC 2 cut(s) 86, 103
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 79, 86
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 5 cut(s) 64, 139, 194, 210, 221
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 2 cut(s) 77, 116
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 8
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 2 cut(s) 127, 282
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 282
OliI CACNNNNGTG 1 cut(s) 146
PkrI GCNGC 3 cut(s) 76, 115, 118
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 146
SatI GCNGC 3 cut(s) 75, 114, 117
Sau3AI GATC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 179
SetI ASST 5 cut(s) 30, 66, 102, 213, 249
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SsiI CCGC 3 cut(s) 77, 114, 144
SspI AATATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 28
TaqI TCGA 1 cut(s) 131
TauI GCSGC 1 cut(s) 116
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 2 cut(s) 74, 116
Tsp45I GTSAC 1 cut(s) 79
XceI RCATGY 1 cut(s) 282
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.