Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004601

Physical Location & Seq

Genomic Coordinates Forward (+)

1921023 .. 1921310

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG024600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAAGGCATCATATGTCGCAATTGCATTATGCACTGTGCTTGTGGTGATGCTGGCCACAGAAGAGGTGTCGGTGGCAGCTGTGACTTGCAACCCGGTAGAGCTGAGCTCTTGTGCAAATGCAATAAGCTCTAATACTGCACCATCAAATCAATGCTGCACCAAACTCAATCAGCAGAAGCCTTGTCTCTGCCAGTACCTCAACAACCCCAACCTGAAGCAATTCGTTAACAGCCCGGGCGCTCGGAATGTTGCTAGGGCTTGTGGAGTGCCCTTTCCCAGGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

95

Amino Acids

10.05

Weight (kDa)

8.65

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	14 - 91	7.9e-08	Probable lipid transfer
Tryp_alpha_amyl	PF00234	34 - 95	2.6e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73780
malus_domestica	MD06G1219800.v1.1 MD13G1035400.v1.1 MD14G1229500.v1.1 MD15G1204900.v1.1 MD16G1037400.v1.1
prunus_persica	Prupe.1G316400_v2.0.a1 Prupe.5G224300_v2.0.a1
pyrus_communis	pycom06g19630 pycom13g03110 pycom14g19090 pycom16g03260
rosa_chinensis	RchiOBHm_Chr7g0179461 RchiOBHm_Chr7g0179471
rosa_laevigata	RLG00000005353 RLG00000005354
rosa_multiflora	Rmu_sc0000735.1_g000021 Rmu_sc0000735.1_g000023
rosa_roxburghii	Rroxscaffold_3G00273980 Rroxscaffold_3G00273990
rosa_rugosa	Rorug06G0424700
rosa_samantha	Rh7AG024000 Rh7AG024300 Rh7BG023600 Rh7BG023700 Rh7CG025000 Rh7CG025100 Rh7DG024500 Rh7DG024600
rosa_wichuraiana	Rw7G001950 Rw7G001960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	4 cut(s)	80, 103, 108, 129
AluI	AGCT	4 cut(s)	80, 103, 108, 129
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	77, 156
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	242
AsuC2I	CCSGG	3 cut(s)	95, 236, 237
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	89, 143
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	280
BcnI	CCSGG	3 cut(s)	95, 236, 237
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	255, 286
BfoI	RGCGCY	1 cut(s)	243
BisI	GCNGC	2 cut(s)	78, 157
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	2 cut(s)	79, 158
Bme1390I	CCNGG	4 cut(s)	95, 236, 237, 280
BmeT110I	CYCGRG	1 cut(s)	235
BmrFI	CCNGG	4 cut(s)	95, 236, 237, 280
BmsI	GCATC	2 cut(s)	17, 39
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
Bpu1102I	GCTNAGC	1 cut(s)	104
BpuMI	CCSGG	3 cut(s)	95, 236, 237
BsaJI	CCNNGG	2 cut(s)	235, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	235, 278
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	193
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	89, 143
BsgI	GTGCAG	2 cut(s)	123, 142
BshFI	GGCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	110
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	95, 236
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	110, 273
Bsp1720I	GCTNAGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	235, 278
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	104
BstENI	CCTNNNNNAGG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstMAI	GTCTC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	4 cut(s)	93, 234, 235, 278
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	89, 143
BsuRI	GGCC	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	242
Cfr9I	CCCGGG	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	196
CviJI	RGCY	8 cut(s)	56, 80, 103, 108, 129, 181, 234, 260
CviKI_1	RGCY	8 cut(s)	56, 80, 103, 108, 129, 181, 234, 260
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	110
FaiI	YATR	3 cut(s)	13, 15, 31
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	78, 157
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	78, 157
FspBI	CTAG	2 cut(s)	255, 286
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	2 cut(s)	78, 157
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	2 cut(s)	95, 236
HhaI	GCGC	1 cut(s)	242
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	2 cut(s)	95, 236
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	246
Hpy8I	GTNNAC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	7 cut(s)	26, 33, 90, 116, 122, 140, 159
HpyF3I	CTNAG	1 cut(s)	104
HspAI	GCGC	1 cut(s)	240
KspAI	GTTAAC	1 cut(s)	229
LpnPI	CCDG	6 cut(s)	38, 108, 206, 227, 249, 265
Lsp1109I	GCAGC	2 cut(s)	89, 143
LweI	GCATC	2 cut(s)	17, 39
MaeI	CTAG	2 cut(s)	255, 286
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	74
MfeI	CAATTG	1 cut(s)	21
MhlI	GDGCHC	2 cut(s)	110, 273
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	2 cut(s)	21, 221
MluNI	TGGCCA	1 cut(s)	56
MnlI	CCTC	2 cut(s)	58, 209
Mox20I	TGGCCA	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	2 cut(s)	95, 236
MspR9I	CCNGG	4 cut(s)	95, 236, 237, 280
MunI	CAATTG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	280
NciI	CCSGG	3 cut(s)	95, 236, 237
NdeI	CATATG	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	79, 158
Psp124BI	GAGCTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	78, 157
ScrFI	CCNGG	4 cut(s)	95, 236, 237, 280
SduI	GDGCHC	2 cut(s)	110, 273
SetI	ASST	8 cut(s)	69, 82, 105, 110, 131, 201, 216, 284
SfaNI	GCATC	2 cut(s)	17, 39
SmaI	CCCGGG	1 cut(s)	237
SrfI	GCCCGGGC	1 cut(s)	237
Sse9I	AATT	2 cut(s)	21, 221
SspMI	CTAG	2 cut(s)	255, 286
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	4 cut(s)	93, 234, 235, 278
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	2 cut(s)	21, 221
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	77, 156
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	235
TspRI	CASTG	1 cut(s)	40
XagI	CCTNNNNNAGG	1 cut(s)	277
XmaI	CCCGGG	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	2 cut(s)	255, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.