Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004601

Physical Location & Seq

Genomic Coordinates Forward (+)

1757576 .. 1758129

Gene Structure 554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG025100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCTGGCCACAGAAGAGGTGTCGGTGGCAGCTGTGACTTGCAACCCGACAGAGCTGAGCTCTTGTGCAAATGCAATAAGCTCTAATACTCCACCATCAAGTATATGCTGCACCAAACTCAATCAGCAGAAGCCTTGTCTCTGCCAGTACCTCAACAACCCCAACCTGAAGCAATTCGTTAACAGCCCGGGCGCTCGGAATGTTGCTAGGACTTGTGGAGTGCCCTTTCCCAGCGTAGAAGTTTGGATATCTGGTATCTACATTGCCCAAGCTAGCTCTGATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

95

Amino Acids

10.06

Weight (kDa)

6.05

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	10 - 76	4.5e-08	Probable lipid transfer
Tryp_alpha_amyl	PF00234	17 - 78	1.6e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73780
malus_domestica	MD06G1219800.v1.1 MD13G1035400.v1.1 MD14G1229500.v1.1 MD15G1204900.v1.1 MD16G1037400.v1.1
prunus_persica	Prupe.1G316400_v2.0.a1 Prupe.5G224300_v2.0.a1
pyrus_communis	pycom06g19630 pycom13g03110 pycom14g19090 pycom16g03260
rosa_chinensis	RchiOBHm_Chr7g0179461 RchiOBHm_Chr7g0179471
rosa_laevigata	RLG00000005353 RLG00000005354
rosa_multiflora	Rmu_sc0000735.1_g000021 Rmu_sc0000735.1_g000023
rosa_roxburghii	Rroxscaffold_3G00273980 Rroxscaffold_3G00273990
rosa_rugosa	Rorug06G0424700
rosa_samantha	Rh7AG024000 Rh7AG024300 Rh7BG023600 Rh7BG023700 Rh7CG025000 Rh7CG025100 Rh7DG024500 Rh7DG024600
rosa_wichuraiana	Rw7G001950 Rw7G001960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	149
AluBI	AGCT	6 cut(s)	32, 55, 60, 81, 272, 276
AluI	AGCT	6 cut(s)	32, 55, 60, 81, 272, 276
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	187
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	29, 108
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	194
AsuC2I	CCSGG	2 cut(s)	188, 189
AsuNHI	GCTAGC	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	41, 95
BccI	CCATC	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	188, 189
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	207, 273
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	2 cut(s)	30, 109
BlpI	GCTNAGC	1 cut(s)	56
BlsI	GCNGC	2 cut(s)	31, 110
Bme1390I	CCNGG	2 cut(s)	188, 189
BmeT110I	CYCGRG	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	188, 189
BmtI	GCTAGC	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
Bpu1102I	GCTNAGC	1 cut(s)	56
BpuMI	CCSGG	2 cut(s)	188, 189
BsaJI	CCNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	187
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	41, 95
BseYI	CCCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	62, 225
Bsp143I	GATC	1 cut(s)	280
Bsp1720I	GCTNAGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	48
BspOI	GCTAGC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	6, 274
BstDEI	CTNAG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	186, 187
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	41, 95
BsuRI	GGCC	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	6, 274
CfoI	GCGC	1 cut(s)	194
Cfr9I	CCCGGG	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	148
CviJI	RGCY	9 cut(s)	8, 32, 55, 60, 81, 133, 186, 272, 276
CviKI_1	RGCY	9 cut(s)	8, 32, 55, 60, 81, 133, 186, 272, 276
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	62
Eco32I	GATATC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	60
EcoRV	GATATC	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	62
FaiI	YATR	2 cut(s)	104, 106
Fnu4HI	GCNGC	2 cut(s)	30, 109
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	30, 109
FspBI	CTAG	2 cut(s)	207, 273
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	2 cut(s)	30, 109
GsaI	CCCAGC	1 cut(s)	234
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	198, 280
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	42, 68, 74, 111
HpyF3I	CTNAG	1 cut(s)	56
HspAI	GCGC	1 cut(s)	192
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	158, 179, 201, 237, 244
Lsp1109I	GCAGC	2 cut(s)	41, 95
MaeI	CTAG	2 cut(s)	207, 273
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	62, 225
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	8
MnlI	CCTC	2 cut(s)	10, 161
Mox20I	TGGCCA	1 cut(s)	8
MroXI	GAANNNNTTC	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	188, 189
NciI	CCSGG	2 cut(s)	188, 189
NdeII	GATC	1 cut(s)	280
NheI	GCTAGC	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	31, 110
Psp124BI	GAGCTC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	30, 109
Sau3AI	GATC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	188, 189
SduI	GDGCHC	2 cut(s)	62, 225
SetI	ASST	9 cut(s)	21, 34, 57, 62, 83, 153, 168, 274, 278
SmaI	CCCGGG	1 cut(s)	189
SrfI	GCCCGGGC	1 cut(s)	189
Sse9I	AATT	1 cut(s)	173
SspMI	CTAG	2 cut(s)	207, 273
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	186, 187
TasI	AATT	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	29, 108
Tsp45I	GTSAC	1 cut(s)	34
TspMI	CCCGGG	1 cut(s)	187
XmaI	CCCGGG	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	2 cut(s)	207, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.