Rh7BG023700

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004601
Physical Location & Seq
Forward (+)
1657713 .. 1658561
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG023700.1

Sequence Viewer

Length: 429 bp
ATGAAGGCATCATATGTCGCAATTGCATTATGCACTGTGCTTGTGGTGATGCTGGCCACAGAAGAGGTGTCGGTGGAAGCTGTGACTTGCAACCCGGTAGAGCTGAGCTCCTGTGCAAATGCAATAAGCTCTAATACTCCACCATCAAATCTATGCTGCACCAAACTCAATCAGCAGAAGCCTTGTCTCTGCCAGTACCTCAACAACCCCAACCTCAAGAAATTTGTTAACAGCCCGAACGCTCGGAATGTTGCTAGGACTTGTGGAGTGCCCTTTCCCAGAGTGCCAATATGGTCTCCAACACAAACAAGACTCAAGACTGACCAAGAGATGAGTACCGTCGAACTTGCCAAAATTTTCAGAGAACATCATGTTGTACTTGCACTCCCAATAACTATTGTAGAACTTGACAAAACAAGAAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

142

Amino Acids

15.7

Weight (kDa)

8.67

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 34 - 94 5.6e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 221, 354
AfaI GTAC 3 cut(s) 197, 337, 378
AluBI AGCT 4 cut(s) 80, 103, 108, 129
AluI AGCT 4 cut(s) 80, 103, 108, 129
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 191, 300
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 2 cut(s) 221, 354
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 273
BalI TGGCCA 1 cut(s) 56
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 191, 300
BfaI CTAG 1 cut(s) 255
BisI GCNGC 1 cut(s) 157
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 2 cut(s) 17, 39
BplI GAGNNNNNCTC 2 cut(s) 92, 124
Bpu1102I GCTNAGC 1 cut(s) 104
BpuEI CTTGAG 2 cut(s) 200, 299
BpuMI CCSGG 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bse1I ACTGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 193
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 142
BshFI GGCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 191, 300
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 110, 273
Bsp1720I GCTNAGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 96
BspTNI GGTCTC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 37, 340
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 104
BstMAI GTCTC 2 cut(s) 191, 300
BstSCI CCNGG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 54
Csp6I GTAC 3 cut(s) 196, 336, 377
CviAII CATG 1 cut(s) 371
CviJI RGCY 7 cut(s) 56, 80, 103, 108, 129, 181, 234
CviKI_1 RGCY 7 cut(s) 56, 80, 103, 108, 129, 181, 234
CviQI GTAC 3 cut(s) 196, 336, 377
DdeI CTNAG 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 110
FaeI CATG 1 cut(s) 374
FaiI YATR 6 cut(s) 13, 15, 31, 154, 292, 372
FatI CATG 1 cut(s) 370
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 255
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 95
Hin1II CATG 1 cut(s) 374
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 1 cut(s) 312
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 246, 362
Hpy188III TCNNGA 2 cut(s) 217, 316
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 344
HpyCH4III ACNGT 2 cut(s) 37, 340
HpyCH4V TGCA 7 cut(s) 26, 33, 90, 116, 122, 159, 383
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 1 cut(s) 374
KspAI GTTAAC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 5 cut(s) 38, 108, 124, 206, 292
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 2 cut(s) 17, 39
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 1 cut(s) 74
MfeI CAATTG 1 cut(s) 21
MhlI GDGCHC 2 cut(s) 110, 273
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 4 cut(s) 21, 221, 354, 421
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 3 cut(s) 58, 209, 224
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 2 cut(s) 228, 427
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 95
MunI CAATTG 1 cut(s) 21
NciI CCSGG 1 cut(s) 95
NdeI CATATG 1 cut(s) 13
NlaIII CATG 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 158
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 110
RsaI GTAC 3 cut(s) 197, 337, 378
RsaNI GTAC 3 cut(s) 196, 336, 377
SacI GAGCTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 228, 427
SatI GCNGC 1 cut(s) 157
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 110, 273
SetI ASST 7 cut(s) 69, 82, 105, 110, 131, 201, 216
SfaNI GCATC 2 cut(s) 17, 39
SmlI CTYRAG 2 cut(s) 215, 314
SmoI CTYRAG 2 cut(s) 215, 314
Sse9I AATT 4 cut(s) 21, 221, 354, 421
SspMI CTAG 1 cut(s) 255
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 37, 340
TaqI TCGA 1 cut(s) 342
TasI AATT 4 cut(s) 21, 221, 354, 421
TatI WGTACW 1 cut(s) 376
Tru1I TTAA 2 cut(s) 228, 427
Tru9I TTAA 2 cut(s) 228, 427
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 40
XapI RAATTY 2 cut(s) 221, 354
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.