Rroxscaffold_3G00273980

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004601
Physical Location & Seq
Reverse (-)
65738574 .. 65738861
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273980.1

Sequence Viewer

Length: 288 bp
ATGAAGGCATCATATGTCGCCATTGCATTATGCACTGTGCTTGTGGTGATGCTGGCCACAGAAGAGGTGTCGGTGGAAGCTGTGACTTGCAACCCGGTAGAGCTGAGCTCCTGTGCAAATGCAATAAGCTCTAATACTCCACCATCAAATCTATGCTGCACCAAACTCAATCAGCAGAAGCCTTGTCTCTGCCAGTACCTCAACAACCCCAACCTCAAGAAATTCGTTAACAGCCCGAACGCTCGGAATGTTGCTAGGACTTGTGGAGTGCCCTTTCCCAGGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

95

Amino Acids

10.21

Weight (kDa)

8.64

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 34 - 95 3.7e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 279
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 4 cut(s) 80, 103, 108, 129
AluI AGCT 4 cut(s) 80, 103, 108, 129
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 191
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 221
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 273
BalI TGGCCA 1 cut(s) 56
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 280
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 2 cut(s) 255, 286
BisI GCNGC 1 cut(s) 157
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 95, 280
BmrFI CCNGG 2 cut(s) 95, 280
BmsI GCATC 2 cut(s) 17, 39
BplI GAGNNNNNCTC 2 cut(s) 92, 124
Bpu1102I GCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 193
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 142
BshFI GGCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 110, 273
Bsp1720I GCTNAGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 104
BstENI CCTNNNNNAGG 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 93, 278
BstSLI GKGCMC 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 196
CviJI RGCY 7 cut(s) 56, 80, 103, 108, 129, 181, 234
CviKI_1 RGCY 7 cut(s) 56, 80, 103, 108, 129, 181, 234
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 110
FaiI YATR 4 cut(s) 13, 15, 31, 154
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 2 cut(s) 255, 286
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 95
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 6 cut(s) 26, 33, 90, 116, 122, 159
HpyF3I CTNAG 1 cut(s) 104
KspAI GTTAAC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 5 cut(s) 38, 108, 124, 206, 265
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 2 cut(s) 17, 39
MaeI CTAG 2 cut(s) 255, 286
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 110, 273
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 56
MnlI CCTC 3 cut(s) 58, 209, 224
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 95, 280
MvaI CCWGG 1 cut(s) 280
NciI CCSGG 1 cut(s) 95
NdeI CATATG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SacI GAGCTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 95, 280
SduI GDGCHC 2 cut(s) 110, 273
SetI ASST 8 cut(s) 69, 82, 105, 110, 131, 201, 216, 284
SfaNI GCATC 2 cut(s) 17, 39
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 221
SspMI CTAG 2 cut(s) 255, 286
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 93, 278
TaaI ACNGT 1 cut(s) 37
TasI AATT 1 cut(s) 221
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 40
XagI CCTNNNNNAGG 1 cut(s) 277
XapI RAATTY 1 cut(s) 221
XspI CTAG 2 cut(s) 255, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.