Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000735.1

Orthogroup ID

OG0004601

Physical Location & Seq

Genomic Coordinates Reverse (-)

101057 .. 102439

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000735.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgaaggcatcatatgtcgcaattgcattttgcactgtgcttgtggtgatgctggccacagaagaggtgtcggtggtagctgtgacttgcaacccggcagagctgagctcttgtgcaaatgcaataagctctaatactgcaccatcaaatctatgctgcaccaaactcaatcagcagaagccttgtctctgccagtacctcaacaaccccaacctgaagcaattcgttaacagcccgggcgctcggaatgttgctagggcttgtggagtgccctttcccagagggagaagtcatcctccaccttgccggacttcggtgaccagtgggctgccgccgactccggaatccggaatccggaatcctgctaccgaactggtgaccggattccggagtctgaatttattgcctcctaataatacccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

141

Amino Acids

14.91

Weight (kDa)

8.99

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73780
malus_domestica	MD06G1219800.v1.1 MD13G1035400.v1.1 MD14G1229500.v1.1 MD15G1204900.v1.1 MD16G1037400.v1.1
prunus_persica	Prupe.1G316400_v2.0.a1 Prupe.5G224300_v2.0.a1
pyrus_communis	pycom06g19630 pycom13g03110 pycom14g19090 pycom16g03260
rosa_chinensis	RchiOBHm_Chr7g0179461 RchiOBHm_Chr7g0179471
rosa_laevigata	RLG00000005353 RLG00000005354
rosa_multiflora	Rmu_sc0000735.1_g000021 Rmu_sc0000735.1_g000023
rosa_roxburghii	Rroxscaffold_3G00273980 Rroxscaffold_3G00273990
rosa_rugosa	Rorug06G0424700
rosa_samantha	Rh7AG024000 Rh7AG024300 Rh7BG023600 Rh7BG023700 Rh7CG025000 Rh7CG025100 Rh7DG024500 Rh7DG024600
rosa_wichuraiana	Rw7G001950 Rw7G001960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	4 cut(s)	340, 347, 354, 387
AciI	CCGC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	4 cut(s)	313, 347, 354, 387
AluBI	AGCT	4 cut(s)	80, 103, 108, 129
AluI	AGCT	4 cut(s)	80, 103, 108, 129
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	235
Aor13HI	TCCGGA	4 cut(s)	340, 347, 354, 387
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	156, 328
ApoI	RAATTY	1 cut(s)	397
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	242
AsuC2I	CCSGG	3 cut(s)	95, 236, 237
AsuHPI	GGTGA	3 cut(s)	58, 328, 388
AvaI	CYCGRG	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	143, 315
BccI	CCATC	1 cut(s)	151
BcnI	CCSGG	3 cut(s)	95, 236, 237
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	243
BisI	GCNGC	3 cut(s)	157, 329, 332
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	3 cut(s)	158, 330, 333
Bme1390I	CCNGG	3 cut(s)	95, 236, 237
BmeT110I	CYCGRG	1 cut(s)	235
BmrFI	CCNGG	3 cut(s)	95, 236, 237
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	2 cut(s)	17, 39
BmuI	ACTGGG	1 cut(s)	415
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
Bpu1102I	GCTNAGC	1 cut(s)	104
BpuMI	CCSGG	3 cut(s)	95, 236, 237
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	5 cut(s)	340, 347, 354, 380, 387
Bsc4I	CCNNNNNNNGG	4 cut(s)	313, 347, 354, 387
Bse1I	ACTGG	4 cut(s)	193, 321, 378, 421
BseAI	TCCGGA	4 cut(s)	340, 347, 354, 387
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	4 cut(s)	313, 347, 354, 387
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	4 cut(s)	193, 321, 378, 421
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	143, 315
BsgI	GTGCAG	2 cut(s)	123, 142
BshFI	GGCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	110
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	8 cut(s)	95, 236, 307, 341, 348, 355, 381, 388
BslI	CCNNNNNNNGG	4 cut(s)	313, 347, 354, 387
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	110, 273
Bsp13I	TCCGGA	4 cut(s)	340, 347, 354, 387
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	96
BspEI	TCCGGA	4 cut(s)	340, 347, 354, 387
BsrI	ACTGG	4 cut(s)	193, 321, 378, 421
BssECI	CCNNGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	104
BstEII	GGTNACC	2 cut(s)	316, 376
BstF5I	GGATG	1 cut(s)	292
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstMAI	GTCTC	1 cut(s)	191
BstPI	GGTNACC	2 cut(s)	316, 376
BstSCI	CCNGG	3 cut(s)	93, 234, 235
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	143, 315
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	33, 328
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	242
Cfr9I	CCCGGG	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	196
CviJI	RGCY	9 cut(s)	56, 80, 103, 108, 129, 181, 234, 260, 328
CviKI_1	RGCY	9 cut(s)	56, 80, 103, 108, 129, 181, 234, 260, 328
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	235
Eco91I	GGTNACC	2 cut(s)	316, 376
EcoICRI	GAGCTC	1 cut(s)	108
EcoO65I	GGTNACC	2 cut(s)	316, 376
EcoT38I	GRGCYC	1 cut(s)	110
FaiI	YATR	3 cut(s)	13, 15, 154
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	3 cut(s)	157, 329, 332
FokI	GGATG	1 cut(s)	279
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	157, 329, 332
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	3 cut(s)	157, 329, 332
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	8 cut(s)	95, 236, 307, 341, 348, 355, 381, 388
HhaI	GCGC	1 cut(s)	242
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	6 cut(s)	337, 344, 351, 358, 384, 391
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	8 cut(s)	95, 236, 307, 341, 348, 355, 381, 388
HphI	GGTGA	3 cut(s)	58, 328, 388
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	246, 396
Hpy188III	TCNNGA	4 cut(s)	341, 348, 355, 388
Hpy8I	GTNNAC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	7 cut(s)	26, 33, 90, 116, 122, 140, 159
HpyF3I	CTNAG	1 cut(s)	104
HspAI	GCGC	1 cut(s)	240
Kpn2I	TCCGGA	4 cut(s)	340, 347, 354, 387
KspAI	GTTAAC	1 cut(s)	229
Lsp1109I	GCAGC	2 cut(s)	143, 315
LweI	GCATC	2 cut(s)	17, 39
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	82, 316, 376
MboII	GAAGA	1 cut(s)	74
MfeI	CAATTG	1 cut(s)	21
MhlI	GDGCHC	2 cut(s)	110, 273
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	3 cut(s)	21, 221, 397
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	331, 400
MnlI	CCTC	5 cut(s)	58, 209, 275, 306, 417
Mox20I	TGGCCA	1 cut(s)	56
MroI	TCCGGA	4 cut(s)	340, 347, 354, 387
MroXI	GAANNNNTTC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	8 cut(s)	95, 236, 307, 341, 348, 355, 381, 388
MspR9I	CCNGG	3 cut(s)	95, 236, 237
MunI	CAATTG	1 cut(s)	21
NciI	CCSGG	3 cut(s)	95, 236, 237
NdeI	CATATG	1 cut(s)	13
NmuCI	GTSAC	3 cut(s)	82, 316, 376
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	4 cut(s)	344, 351, 358, 384
PkrI	GCNGC	3 cut(s)	158, 330, 333
PleI	GAGTC	2 cut(s)	331, 399
PpsI	GAGTC	2 cut(s)	331, 399
Psp124BI	GAGCTC	1 cut(s)	110
PspEI	GGTNACC	2 cut(s)	316, 376
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	157, 329, 332
SchI	GAGTC	2 cut(s)	331, 400
ScrFI	CCNGG	3 cut(s)	95, 236, 237
SduI	GDGCHC	2 cut(s)	110, 273
SetI	ASST	8 cut(s)	69, 82, 105, 110, 131, 201, 216, 304
SfaNI	GCATC	2 cut(s)	17, 39
SmaI	CCCGGG	1 cut(s)	237
SrfI	GCCCGGGC	1 cut(s)	237
Sse9I	AATT	3 cut(s)	21, 221, 397
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	3 cut(s)	93, 234, 235
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	3 cut(s)	21, 221, 397
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	4 cut(s)	344, 351, 358, 384
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	40, 328
TseFI	GTSAC	3 cut(s)	82, 316, 376
TseI	GCWGC	2 cut(s)	156, 328
Tsp45I	GTSAC	3 cut(s)	82, 316, 376
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	235
TspRI	CASTG	2 cut(s)	40, 328
XapI	RAATTY	1 cut(s)	397
XmaI	CCCGGG	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.