MD15G1396100.v1.1

Belongs to the glycosyl hydrolase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004524
Physical Location & Seq
Forward (+)
49573130 .. 49573279
150 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1396100.v1.1.491

Sequence Viewer

Length: 150 bp
ATGATCATTGACCGGCACTTGCAGATTACAAGAACATTTCGAGAGAAGGGTATTCCTTGTGACGTCATATGGATGGTTATTGATTACATGGATGGCTTTCGTTGTTTCACTTTTGACAAGGTATGCATTCCGTTAAATGTTCTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00500 ko01100 map00052 map00500 map01100
Pfam Domains
Protein Families
DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

50

Amino Acids

5.93

Weight (kDa)

6.51

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_31_2nd PF01055 7 - 41 2.1e-08 Glycosyl hydrolases family 31 TIM-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 63
BccI CCATC 2 cut(s) 67, 86
BclI TGATCA 1 cut(s) 3
BsaHI GRCGYC 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 12
BseGI GGATG 2 cut(s) 78, 97
BsiSI CCGG 1 cut(s) 13
BsmI GAATGC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 3
BsrFI RCCGGY 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 12
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 63
BstF5I GGATG 2 cut(s) 78, 97
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BtsCI GGATG 2 cut(s) 78, 97
Cfr10I RCCGGY 1 cut(s) 12
CviAII CATG 1 cut(s) 88
CviJI RGCY 1 cut(s) 96
CviKI_1 RGCY 1 cut(s) 96
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EcoT22I ATGCAT 1 cut(s) 128
FaeI CATG 1 cut(s) 91
FaiI YATR 4 cut(s) 68, 70, 89, 124
FatI CATG 1 cut(s) 87
FauNDI CATATG 1 cut(s) 68
FbaI TGATCA 1 cut(s) 3
FokI GGATG 2 cut(s) 85, 104
HapII CCGG 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 1 cut(s) 91
HpaII CCGG 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 22, 126
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 1 cut(s) 26
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
Mph1103I ATGCAT 1 cut(s) 128
MseI TTAA 1 cut(s) 134
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 1 cut(s) 13
Mva1269I GAATGC 1 cut(s) 126
NdeI CATATG 1 cut(s) 68
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 128
PctI GAATGC 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 134
Sau3AI GATC 1 cut(s) 3
SetI ASST 2 cut(s) 66, 123
SgeI CNNG 7 cut(s) 25, 31, 42, 53, 69, 100, 130
SmiMI CAYNNNNRTG 1 cut(s) 71
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 40
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseFI GTSAC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 120
ZraI GACGTC 1 cut(s) 64
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.