Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004524

Physical Location & Seq

Genomic Coordinates Forward (+)

15433856 .. 15437417

Gene Structure 3562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAAAACAAATGAGGATCAAAGTGAGGTGGAGGAGAGACCGAATGAAATACAAGAGGCTGCCGGAAATTCCAATGCGGACAAGTATGAGGAGAAAAGTGTGGCGCGTGAACCGTTGAGTCCTTCTCCTTCACTTCGTAGGATGCCGATCACTCGGTTTTGGAATTCAATGTTTTCAATAGATAACAGGAATAGATGCAACGAGTGTACTACAGCCCCGAAATCTTTAGACAAGCCGGTATCGAGGATAAATCAAATCTACTTGCTGCAATCATGCGTTCGTGGGCGTCGCCAAGATCGCTTTCATATTGGTGGCTTGATATTGATCACATGGATGGAAGGAGATGAAGAAGATGATGGTGAGAAAAGTCTGGGTCTTAAGCTTAGGCCGCGGGTTTACATGATGGGAATGGGATCAGAGGTTGCTCCCGCAGCTGCAATCAAAGTCAAAGGTAAGCTTCTTTCCTCTTTTTATACAAAATCAGAGAGATGGGTTAGAAAAAATGTGGGCAATGAATCAACCTATAGGTTAGAAACTTTTGATTCATTGGATCTTTTCGGAATCAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

190

Amino Acids

21.77

Weight (kDa)

8.4

Isoelectric Point (pI)

65.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25560 FvH4_1g25560 FvH4_1g25560
malus_domestica	MD15G1396100.v1.1 MD17G1250300.v1.1
prunus_persica	Prupe.3G148600_v2.0.a1
pyrus_communis	pycom17g25420
rosa_chinensis	RchiOBHm_Chr1g0336261 RchiOBHm_Chr2g0123721 RchiOBHm_Chr2g0123751
rosa_laevigata	RLG00000018773
rosa_multiflora	Rmu_co8452975.1_g000001 Rmu_sc0002870.1_g000009 Rmu_sc0021381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085250 Rroxscaffold_2G00115060 Rroxscaffold_2G00120380 Rroxscaffold_3G00230560 Rroxscaffold_3G00245330 Rroxscaffold_4G00324630 Rroxscaffold_7G00170480 Rroxscaffold_7G00193250 Rroxscaffold_7G00202250 Rroxscaffold_7G00202260
rosa_rugosa	Rorug02G0247500
rosa_samantha	Rh2AG306600 Rh2BG315000 Rh2BG315100 Rh2CG293000 Rh2DG330300 Rh4DG109900
rosa_wichuraiana	Rw2G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	106, 391
AciI	CCGC	4 cut(s)	77, 389, 391, 429
AclWI	GGATC	3 cut(s)	24, 421, 558
AcsI	RAATTY	2 cut(s)	67, 163
AcyI	GRCGYC	1 cut(s)	286
AfaI	GTAC	1 cut(s)	208
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	168, 177
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	3 cut(s)	382, 434, 457
AluI	AGCT	3 cut(s)	382, 434, 457
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	3 cut(s)	24, 421, 558
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	4 cut(s)	59, 265, 431, 434
ApoI	RAATTY	2 cut(s)	67, 163
AspLEI	GCGC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	371
BbvI	GCAGC	4 cut(s)	46, 252, 421, 443
BccI	CCATC	4 cut(s)	328, 350, 397, 483
BclI	TGATCA	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	31
BfmI	CTRYAG	2 cut(s)	210, 523
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	5 cut(s)	60, 266, 389, 432, 435
BlsI	GCNGC	5 cut(s)	61, 267, 390, 433, 436
BmsI	GCATC	2 cut(s)	132, 185
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
Bpu10I	CCTNAGC	1 cut(s)	383
BsaBI	GATNNNNATC	2 cut(s)	146, 323
BsaHI	GRCGYC	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	389
Bse118I	RCCGGY	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	517
Bse8I	GATNNNNATC	2 cut(s)	146, 323
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	2 cut(s)	147, 339
BseJI	GATNNNNATC	2 cut(s)	146, 323
BseMI	GCAATG	1 cut(s)	517
BseRI	GAGGAG	2 cut(s)	47, 104
BseXI	GCAGC	4 cut(s)	46, 252, 421, 443
Bsh1236I	CGCG	2 cut(s)	106, 391
BshFI	GGCC	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	63, 236
BsmAI	GTCTC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	388
Bso31I	GGTCTC	1 cut(s)	31
Bsp143I	GATC	6 cut(s)	16, 147, 295, 324, 413, 550
BspACI	CCGC	4 cut(s)	77, 389, 391, 429
BspANI	GGCC	1 cut(s)	388
BspFNI	CGCG	2 cut(s)	106, 391
BspPI	GGATC	3 cut(s)	24, 421, 558
BspTI	CTTAAG	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	6 cut(s)	16, 147, 295, 324, 413, 550
BssNI	GRCGYC	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	286
BstAFI	CTTAAG	1 cut(s)	377
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	147, 339
BstFNI	CGCG	2 cut(s)	106, 391
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	6 cut(s)	19, 150, 298, 327, 416, 553
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	6 cut(s)	16, 147, 295, 324, 413, 550
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 388, 431
BstSFI	CTRYAG	2 cut(s)	210, 523
BstUI	CGCG	2 cut(s)	106, 391
BstV1I	GCAGC	4 cut(s)	46, 252, 421, 443
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	389
BtsCI	GGATG	2 cut(s)	147, 339
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	235
Cfr42I	CCGCGG	1 cut(s)	392
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	3 cut(s)	273, 330, 400
CviJI	RGCY	8 cut(s)	59, 215, 235, 315, 382, 388, 434, 457
CviKI_1	RGCY	8 cut(s)	59, 215, 235, 315, 382, 388, 434, 457
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	6 cut(s)	18, 149, 297, 326, 415, 552
DpnII	GATC	6 cut(s)	16, 147, 295, 324, 413, 550
Eco31I	GGTCTC	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	163
FaeI	CATG	3 cut(s)	276, 333, 403
FaiI	YATR	7 cut(s)	87, 274, 306, 331, 401, 474, 525
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FatI	CATG	3 cut(s)	272, 329, 399
FauI	CCCGC	2 cut(s)	384, 436
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	5 cut(s)	60, 266, 389, 432, 435
FokI	GGATG	2 cut(s)	154, 346
Fsp4HI	GCNGC	5 cut(s)	60, 266, 389, 432, 435
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	5 cut(s)	60, 266, 389, 432, 435
HaeIII	GGCC	1 cut(s)	388
HapII	CCGG	2 cut(s)	63, 236
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	276, 333, 403
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HindIII	AAGCTT	2 cut(s)	380, 455
HinfI	GANTC	4 cut(s)	118, 515, 542, 561
HpaII	CCGG	2 cut(s)	63, 236
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	3 cut(s)	110, 207, 397
Hpy188I	TCNGA	3 cut(s)	418, 484, 560
Hpy8I	GTNNAC	3 cut(s)	110, 207, 397
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	3 cut(s)	132, 138, 332
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	198, 268, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 388, 431
HpyF3I	CTNAG	1 cut(s)	383
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	3 cut(s)	276, 333, 403
HspAI	GCGC	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	324
KspI	CCGCGG	1 cut(s)	392
Kzo9I	GATC	6 cut(s)	16, 147, 295, 324, 413, 550
LmnI	GCTCC	1 cut(s)	430
LpnPI	CCDG	4 cut(s)	76, 172, 249, 356
Lsp1109I	GCAGC	4 cut(s)	46, 252, 421, 443
LweI	GCATC	2 cut(s)	132, 185
MalI	GATC	6 cut(s)	18, 149, 297, 326, 415, 552
MboI	GATC	6 cut(s)	16, 147, 295, 324, 413, 550
MboII	GAAGA	2 cut(s)	359, 362
MflI	RGATCY	1 cut(s)	550
MluCI	AATT	2 cut(s)	67, 163
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	8 cut(s)	7, 19, 25, 49, 82, 237, 412, 475
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	2 cut(s)	309, 332
MspA1I	CMGCKG	2 cut(s)	391, 434
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	2 cut(s)	63, 236
MvnI	CGCG	2 cut(s)	106, 391
MwoI	GCNNNNNNNGC	3 cut(s)	297, 388, 431
NdeII	GATC	6 cut(s)	16, 147, 295, 324, 413, 550
NlaIII	CATG	3 cut(s)	276, 333, 403
PfeI	GAWTC	3 cut(s)	515, 542, 561
PkrI	GCNGC	5 cut(s)	61, 267, 390, 433, 436
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
RseI	CAYNNNNRTG	2 cut(s)	309, 332
SacII	CCGCGG	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	5 cut(s)	60, 266, 389, 432, 435
Sau3AI	GATC	6 cut(s)	16, 147, 295, 324, 413, 550
SchI	GAGTC	1 cut(s)	127
SetI	ASST	8 cut(s)	30, 384, 423, 436, 454, 459, 524, 530
SfaNI	GCATC	2 cut(s)	132, 185
SfcI	CTRYAG	2 cut(s)	210, 523
Sfr303I	CCGCGG	1 cut(s)	392
SgrBI	CCGCGG	1 cut(s)	392
SmiMI	CAYNNNNRTG	2 cut(s)	309, 332
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	2 cut(s)	67, 163
SsiI	CCGC	4 cut(s)	77, 389, 391, 429
TaaI	ACNGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	242
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	67, 163
TatI	WGTACW	1 cut(s)	206
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	3 cut(s)	515, 542, 561
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseI	GCWGC	4 cut(s)	59, 265, 431, 434
TspDTI	ATGAA	6 cut(s)	17, 60, 293, 360, 528, 534
Vha464I	CTTAAG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	67, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.